cluster # 6771

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Oryza sativa
cluster # 6771 cluster # 6771 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6771#0 length = 607 sequences # 3

consensus_6771#1 length = 329 sequences # 1

consensusID : consensus_6771#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 607
fasta sequence

                              [GGCAAGGGGGTAGGGGGGNGGGGGTGGGAGGGGGTCTAGTTCCTTCCTTCACTAGTAAGCTTAGGTTTAGACTTCTCGGGTATCTCCCGTTGTTGGGTTAATCCCTTTTTGTACAGCTCGAAGGGGTCGTCGGCGTCCGGCTCCTTCGTCTTGGTTGCTTCTGCCATGGATGTCCTCGTCGGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCGAAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAGCTTTACAAGGT-GCGGCTGGATTATCAGCTCCTGTCGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGTCCTTCCTTGCATATTTCAGGGTTAAAATGTAATTTGGCCATCTGTCAGGGGTCTCCCTGTAAGACTTGCTGTACTCTCAACTTGCTTAATAAATTTCTAATCTGAGGCTGTAGCCTCAGTTTGTTCTAAAAAAAAA]

[+] EMBL AU077726             [GGCAAGGGGGTAGGGGGGNGGGGGTGGGAGGGGGTCTAGTTCCTTCCTTCACTAGTAAGCTTAGGTTTAGACTTCTCGGGTATCTCCCGTTGTTGGGTTAATCCCTTTTTGTACAGCTCGAAGGGGTCGTCGGCGTCCGGCTCCTTCGTCTTGGTTGCTTCTGCCATGGATGTCCTCGTCGGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCGAAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCT                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CB000904             [                                                                          CTCGGGTATCTCCCGTTGTTGGGTTAATCCCTTTTTGTACAGCTCGAAGGGGTCGTCGGCGTCCGGCTCCTTCGTCTTGGTTGCTTCTGCCATGGATGTCCTCGTCGGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCGAAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAGCTTTACAAGGT GCGGCT                                                                                                                                                                                                                                               ]
[+] EMBL AU077727             [                                                                                                                                                            GCTTCTGCCATGGATGTCCTCGTCGGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCGAAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAGCTTTACAAGCTAGC CATGGATTATCAGCTCCTGTCGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGTCCTTCCTTGCATATTTCAGGGTTAAAATGTAATTTGGCCATCTGTCAGGGGTCTCCCTGTAAGACTTGCTGTACTCTCAACTTGCTTAATAAATTTCTAATCTGAGGCTGTAGCCTCAGTTTGTTCTAAAAAAAAA]




>consensus_6771#0
GGCAAGGGGGTAGGGGGGNGGGGGTGGGAGGGGGTCTAGTTCCTTCCTTCACTAGTAAGC
TTAGGTTTAGACTTCTCGGGTATCTCCCGTTGTTGGGTTAATCCCTTTTTGTACAGCTCG
AAGGGGTCGTCGGCGTCCGGCTCCTTCGTCTTGGTTGCTTCTGCCATGGATGTCCTCGTC
GGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCG
AAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTC
CGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAGCTTTACAAG
GTGCGGCTGGATTATCAGCTCCTGTCGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTG
TGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGTCCTTCCTTG
CATATTTCAGGGTTAAAATGTAATTTGGCCATCTGTCAGGGGTCTCCCTGTAAGACTTGC
TGTACTCTCAACTTGCTTAATAAATTTCTAATCTGAGGCTGTAGCCTCAGTTTGTTCTAA
AAAAAAA

consensusID : consensus_6771#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [NGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTANTTTACAAGGTGCGGCTGATGTGTTTCTCCGTTTGCCTTAGATGCTTCAACCTCCATAGAGAGGCCCCTTTTGGGTTCACATCCAGGCATCATTATATGCAGCTAGCCATGGATTATCAGCTCCTGTCNGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGNCCATCCTTGCA]

[+] EMBL C74685               [NGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTANTTTACAAGGTGCGGCTGATGTGTTTCTCCGTTTGCCTTAGATGCTTCAACCTCCATAGAGAGGCCCCTTTTGGGTTCACATCCAGGCATCATTATATGCAGCTAGCCATGGATTATCAGCTCCTGTCNGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTAGGNCCATCCTTGCA]




>consensus_6771#1
NGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTCCGGCGA
GCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTANTTTACAAGGTGCGGC
TGATGTGTTTCTCCGTTTGCCTTAGATGCTTCAACCTCCATAGAGAGGCCCCTTTTGGGT
TCACATCCAGGCATCATTATATGCAGCTAGCCATGGATTATCAGCTCCTGTCNGTCGTTC
AATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGAAGGACCCGATTGCTTT
TTCTGTTTCTTTCTAGGNCCATCCTTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6771#0      GGCAAGGGGGTAGGGGGGNGGGGGTGGGAGGGGGTCTAGTTCCTTCCTTCACTAGTAAGC 60
consensus_6771#1      ------------------------------------------------------------
                                                                                  

consensus_6771#0      TTAGGTTTAGACTTCTCGGGTATCTCCCGTTGTTGGGTTAATCCCTTTTTGTACAGCTCG 120
consensus_6771#1      ------------------------------------------------------------
                                                                                  

consensus_6771#0      AAGGGGTCGTCGGCGTCCGGCTCCTTCGTCTTGGTTGCTTCTGCCATGGATGTCCTCGTC 180
consensus_6771#1      ------------------------------------------------------------
                                                                                  

consensus_6771#0      GGCTTTTTCTCCGGTGAAGATTCCCTATCAATCATTTTCCAGGTTCACCATTAACGCCCG 240
consensus_6771#1      ------------------------------------------------------------
                                                                                  

consensus_6771#0      AAGCTAAGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTC 300
consensus_6771#1      ------NGAGCACGATGGGTTTGCCCAAAAGAAGGTAGCGCTGGCCACTTGCTTCTTCTC 54
                             *****************************************************

consensus_6771#0      CGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAGCTTTACAAG 360
consensus_6771#1      CGGCGAGCTTTCTGCATCTATGTTGGTCTTCTTACTCGTCTTTGGCGTTAN-TTTACAAG 113
                      **************************************************  ********

consensus_6771#0      GTGCGGCTGGATTATCAGCTCCTGTCGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTG 420
consensus_6771#1      GTGCGGCTGATGTGTT--TCTCCGTTTGCCTTAGATGCTTCAA-----CCTCCATAGA-G 165
                      *********   * *      * **   * **  **** ** *     *** * * *  *

consensus_6771#0      TGGACATGGCAAAGAGAAGGACCCGATTGCTTTTTCTGTTTCTTTCTA-GGTCCTTCCTT 479
consensus_6771#1      AGGCCCCTTTTGGGTTCACATCCAGGCATCATTATATGCAGCTAGCCATGGATTATCAGC 225
                       ** *        *   *   ** *    * ** * **   **  * * **    **   

consensus_6771#0      GCATATTTCAGGGTTAAAATGT-AATTTGGCCATC--TGTCAGGGGTCTCCCTGTAAGAC 536
consensus_6771#1      TCCTGTCNGTCGTTCAATGCGTCGATCTGGCCTTCGTTGTTGTGGACATGGCAAAGAGA- 284
                       * * *     * * **   **  ** ***** **  ***   **   *  *    *** 

consensus_6771#0      TTGCTGTACTCTCAACTTGCTTAATAAATTTCTAATCTGAGGCTGTAGCCTCAGTTTGTT 596
consensus_6771#1      ----AGGACCC---GATTGCTTTTTCTGTTTCTT-TCTAGGNCCATCCTTGCA------- 329
                           * ** *     ******  *   *****  ***  * *  *     **       

consensus_6771#0      CTAAAAAAAAA 607
consensus_6771#1      -----------