Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6775 cluster # 6775       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6775#0 length = 1561 sequences # 4  

consensusID : consensus_6775#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1561
fasta sequence
                              [AAAACCCTTGCTCCCACAGGAGTGAACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCCGCCGCGCAGCCGCCGCCGCCGGTCACCGCCGCGACGCTCGTCTACCTCGAGAGCCCCACCGACACCCCGGGGCAGAAGCTCGTCGGCGCGCTCCTCGACGCCGCCGTCTTCGTCGCCCTCGTCGCCGTCGTCACCTTCGTCCTCGTCGCGCTCTACTACTACCGCTGCACGGGCTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCGTCCTCTTCTCCATGGGCGGCGCCATCGCCGCCGCCGTCCTCCGCCGCCTCGGCGCCCCGCTCGACGCCGCCACCGCGCTCGTGCTCCTCTTCAACGCCTCCGCCGTCGGCGTCCTCTCCGTCTTCGCCTCCGCGGTCCCCATCGTCGTGCGCCAGGGCTACATGGTCGCCCTCGCCGTCATCGTCGCCGCCTGGCTCTCCAGGCTGCCCGAGTGGACCACCTGGGTCATGCTCATCGCGCTCGCCCTGTATGACCTCGTCGCCGTGCTCGCGCCGCGGGGTCCTCTCAGGATGCTTGTGGAGCTCGCCTCATCCAGGGACGATGAGCTCCCTGCGCTCGTCTACGAGTCGAGACCGACGGTTGGGCCGGCCTCCGGTTCTTCCTCCTACGCTTCAGCCATGGGATCAGTTGAGATGCAGCCGGTGGCCGATCCCGGTCGATCGGGTGGAAATCAGTATGACAGAGTAGAGCAGGAGGATGATTCGAGCCGCGCCGTGGTGGAAATGAGGGATGTTGGTGGTAGCCGATCAAGCATTCGTGAGAGGAACCTCGAAAGGGAGGCGCCGATGGCGGTATCGGTATCAGGGCATTCATCGAATCAGGGTGGGAGTTCACAGCATGCTGTGATTCAGATTGAGCAGCACGAGGAAGGAGAGACAGTGCCATTGGTATCAGCGGCATCTGCCAACAATGCAGCCCCTAATGAGGAGCACAGAGAAAACTCTTCTTCAGACTCTGGTATGGAGTTCGAGATGTTCGAGTCCACCAGGGGCATCAAGCTGGGACTTGGTGATTTTATCTTCTACAGCGTGCTTGTGGGGAGGGCTGCGATGTATGATCTGATGACGGTGTATGCGTGCTACCTTGCCATCATTGCTGGGCTTGGCTGCACCCTTATCTTGCTGTCAATATGCAAGCATGCATTGCCTGCACTCCCGATCTCCATCTTGCTGGGTGTCACATTCTACTTCTTGACTCGGTTGCTGATGGAG-CCGTTCGTCGTTGGCTCTTCAACCAACTTGGTGATGTTCTGATTAATCTGCTATTGCCATTTTACATATGTGAAACAAGAAAGAGGAAATGATTGGCATTTTTTTTCAGTGACTGGTATTTTTGTTGGTCACTTCGTAGAGCAGTCATATGTATTTATCATTAGGAAATGTTGTTACAAGTTCAAGACCTTAGGCTCTTAAGGTAGTCTCAGGGATCGACTAGTTACATGCCTTGTTGTATGGTTCTATCAACATGACATGACATTTGAGAAGAAAAAAAAAAAAAAAAA]

[+] EMBL AK106403             [AAAACCCTTGCTCCCACAGGAGTGAACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGAAGGCGGCCGCCGCGCAGCCGCCGCCGCCGGTCACCGCCGCGACGCTCGTCTACCTCGAGAGCCCCACCGACACCCCGGGGCAGAAGCTCGTCGGCGCGCTCCTCGACGCCGCCGTCTTCGTCGCCCTCGTCGCCGTCGTCACCTTCGTCCTCGTCGCGCTCTACTACTACCGCTGCACGGGCTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCGTCCTCTTCTCCATGGGCGGCGCCATCGCCGCCGCCGTCCTCCGCCGCCTCGGCGCCCCGCTCGACGCCGCCACCGCGCTCGTGCTCCTCTTCAACGCCTCCGCCGTCGGCGTCCTCTCCGTCTTCGCCTCCGCGGTCCCCATCGTCGTGCGCCAGGGCTACATGGTCGCCCTCGCCGTCATCGTCGCCGCCTGGCTCTCCAGGCTGCCCGAGTGGACCACCTGGGTCATGCTCATCGCGCTCGCCCTGTATGACCTCGTCGCCGTGCTCGCGCCGCGGGGTCCTCTCAGGATGCTTGTGGAGCTCGCCTCATCCAGGGACGATGAGCTCCCTGCGCTCGTCTACGAGTCGAGACCGACGGTTGGGCCGGCCTCCGGTTCTTCCTCCTACGCTTCAGCCATGGGATCAGTTGAGATGCAGCCGGTGGCCGATCCCGGTCGATCGGGTGGAAATCAGTATGACAGAGTAGAGCAGGAGGATGATTCGAGCCGCGCCGTGGTGGAAATGAGGGATGTTGGTGGTAGCCGATCAAGCATTCGTGAGAGGAACCTCGAAAGGGAGGCGCCGATGGCGGTATCGGTATCAGGGCATTCATCGAATCAGGGTGGGAGTTCACAGCATGCTGTGATTCAGATTGAGCAGCACGAGGAAGGAGAGACAGTGCCATTGGTATCAGCGGCATCTGCCAACAATGCAGCCCCTAATGAGGAGCACAGAGAAAACTCTTCTTCAGACTCTGGTATGGAGTTCGAGATGTTCGAGTCCACCAGGGGCATCAAGCTGGGACTTGGTGATTTTATCTTCTACAGCGTGCTTGTGGGGAGGGCTGCGATGTATGATCTGATGACGGTGTATGCGTGCTACCTTGCCATCATTGCTGGGCTTGGCTGCACCCTTATCTTGCTGTCAATATGCAAGCATGCATTGCCTGCACTCCCGATCTCCATCTTGCTGGGTGTCACATTCTACTTCTTGACTCGGTTGCTGATGGAG CCGTTCGTCGTTGGCTCTTCAACCAACTTGGTGATGTTCTGATTAATCTGCTATTGCCATTTTACATATGTGAAACAAGAAAGAGGAAATGATTGGC                                                                                                                                                                                                 ]
[-] EMBL CB657087             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGCAGCCGGTGGCCGATCCCGGTCGATCGGGTGGAAATCAGTATGACAGAGTAGAGCAGGAGGATGATTCGAGCCGCGCCGTGGTGGAAATGAGGGATGTTGGTGGTAGCCGATCAAGCATTCGTGAGAGGAACCTCGAAAGGGAGGCGCCGATGGCGGTATCGGTATCAGGGCATTCATCGAATCAGGGTGGGAGTTCACAGCATGCTGTGATTCAGATTGAGCAGCACGAGGAAGGAGAGACAGTGCCATTGGTATCAGCGGCATCTGCCAACAATGCAGCCCCTAATGAGGAGCACAGAGAAAACTCTTCTTCAGACTCTGGTATGGAGTTCGAGATGTTCGAGTCCACCAGGGGCATCAAGCTGGGACTTGGTGATTTTATCTTCTACAGCGTGCTTGTGGGGAGGGCTGCGATGTATGATCTGATGACGGTGTATGCGTGCTACCTTGCCATCATTGCTGGGCTTGGCTGCACCCTTATCTTGCTGTCAATATGCAAGCATGCATTGCCTGCACTCCCGATCTCCATCTTGCTGGGTGTCACATTCTACTTCTTGACTCGGTTGCTGATGGAG CCGTTCGTCGTTGGCTCTTCAACCAACTTGGTGATGTTTTGATTAATCTGCTATTGCCATTTTACATATGTGAAACAAGAAAGAGGAAATGATTGGCATTTTTTTTCAGTGACTGGTATTTTTGTTGGTCACTTCGTAGAGCAGTCATATGTATTTATCATTAGGAAATGTTGTTACAAGTTCAAGACCTTAGGCTCTTAAGGTAGTCTCAGGGATCGACTAGTTACATGCCTTGTTGTATGGTTCTATCAACATGACATGACATTTGAGAAG                 ]
[+] EMBL CA766574             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGGCGGCCGNTCCCGGTCGATCGGGTGGAAATCAGTATGACAGAGTAGAGCAGGAGGATGATTCGAGCCGTGCCGCGGTGGAAACGAGGGATGTTGGTGGTAGCCGATCAAGCATTCGTGAGAGGAACCTCGAAAGGGAGGCGCCGATGGCGGTATCGGTATCAGGGCATTCATCGAATCAGGGTGGGAGTTCACAGCATGCTGTGATTCAGATTGAGCAGCACGAGGAAGGAGAGACAGNGCCATTGGTATCAGCGGCATCTGCCAACAATGCAGCCCCTAATGAGGAGCACAGAGAAAGCTCTTCTTCAGACTCTGGTATGGAGTTCGAGATGTTCGAGTCCACCAGGGGCATCAAGCTGGGACTTGGTGATTTTATCTTCTACAGCGTGCTTGTGGGGAGGGCTGCGATGTATGATCTGATGACGGTGTATGCGTGCTACCTTGCCATCATTGCTGGGCTTGGCTGCACCCTTATCTTGCTGTCAATATGCAAGCATGCATTGCCTGCACTCCCGATCTCCATCCTGCTGGGTGTCACATTCTACTTCTTGACTCGGTTGCTGATGGAGCCCGTTCGTCGTTGGCTCTTCAACCAACTTGGTGATGTTCTGATTAATCTGCTATTGCCATTTTACATATGTGAAACAAGAAAGAGGAAATGATTGGC                                                                                                                                                                                                 ]
[+] EMBL AU058092             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTTGGCTCTTCAACCAACTTGGTGATGTTCTGANTAANCTGCTATTGCCATTTTACATATGTGAAACNAGAAAGAGGAAATGANTGGCATTTTTTTTCAGTGACTGGTANTTTTGTTGGTCACTTCGTAGANCAGTCATATGTATTTANCATTAGGAAATGTTGTTACAAGTTCAANACCTTAGGCTCTTAAGGTANTCTCAGGGANCGACTAGTTACATGCCTTGTTGTATGGTTCTATCAACATGACATGACATTTGAGAAGAAAAAAAAAAAAAAAAA]


>consensus_6775#0 AAAACCCTTGCTCCCACAGGAGTGAACACGACGCGACCCGAGCCGGAGAAGGGGAAGGGA AGGCGGCCGCCGCGCAGCCGCCGCCGCCGGTCACCGCCGCGACGCTCGTCTACCTCGAGA GCCCCACCGACACCCCGGGGCAGAAGCTCGTCGGCGCGCTCCTCGACGCCGCCGTCTTCG TCGCCCTCGTCGCCGTCGTCACCTTCGTCCTCGTCGCGCTCTACTACTACCGCTGCACGG GCTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCGTCCTCTTCTCCATGGGCGGCG CCATCGCCGCCGCCGTCCTCCGCCGCCTCGGCGCCCCGCTCGACGCCGCCACCGCGCTCG TGCTCCTCTTCAACGCCTCCGCCGTCGGCGTCCTCTCCGTCTTCGCCTCCGCGGTCCCCA TCGTCGTGCGCCAGGGCTACATGGTCGCCCTCGCCGTCATCGTCGCCGCCTGGCTCTCCA GGCTGCCCGAGTGGACCACCTGGGTCATGCTCATCGCGCTCGCCCTGTATGACCTCGTCG CCGTGCTCGCGCCGCGGGGTCCTCTCAGGATGCTTGTGGAGCTCGCCTCATCCAGGGACG ATGAGCTCCCTGCGCTCGTCTACGAGTCGAGACCGACGGTTGGGCCGGCCTCCGGTTCTT CCTCCTACGCTTCAGCCATGGGATCAGTTGAGATGCAGCCGGTGGCCGATCCCGGTCGAT CGGGTGGAAATCAGTATGACAGAGTAGAGCAGGAGGATGATTCGAGCCGCGCCGTGGTGG AAATGAGGGATGTTGGTGGTAGCCGATCAAGCATTCGTGAGAGGAACCTCGAAAGGGAGG CGCCGATGGCGGTATCGGTATCAGGGCATTCATCGAATCAGGGTGGGAGTTCACAGCATG CTGTGATTCAGATTGAGCAGCACGAGGAAGGAGAGACAGTGCCATTGGTATCAGCGGCAT CTGCCAACAATGCAGCCCCTAATGAGGAGCACAGAGAAAACTCTTCTTCAGACTCTGGTA TGGAGTTCGAGATGTTCGAGTCCACCAGGGGCATCAAGCTGGGACTTGGTGATTTTATCT TCTACAGCGTGCTTGTGGGGAGGGCTGCGATGTATGATCTGATGACGGTGTATGCGTGCT ACCTTGCCATCATTGCTGGGCTTGGCTGCACCCTTATCTTGCTGTCAATATGCAAGCATG CATTGCCTGCACTCCCGATCTCCATCTTGCTGGGTGTCACATTCTACTTCTTGACTCGGT TGCTGATGGAGCCGTTCGTCGTTGGCTCTTCAACCAACTTGGTGATGTTCTGATTAATCT GCTATTGCCATTTTACATATGTGAAACAAGAAAGAGGAAATGATTGGCATTTTTTTTCAG TGACTGGTATTTTTGTTGGTCACTTCGTAGAGCAGTCATATGTATTTATCATTAGGAAAT GTTGTTACAAGTTCAAGACCTTAGGCTCTTAAGGTAGTCTCAGGGATCGACTAGTTACAT GCCTTGTTGTATGGTTCTATCAACATGACATGACATTTGAGAAGAAAAAAAAAAAAAAAA A



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)