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Oryza sativa
cluster # 6776 cluster # 6776       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6776#0 length = 1239 sequences # 4  

consensusID : consensus_6776#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1239
fasta sequence
                              [GGAGCTAGAAATGGCTCCCAGGCTCTGCTGCTCTTCTCAATTCTTGCTCGCCGTCTCCTTCCTGGCCGCCTTCGCGGCCGTCTCCAACGCCGGCAAGGTGGCCGTCTACTGGGGGCAGGGGGCGGGCAACGGCGACGGCACCCTCGCCGAGACATGCGCCACCGGCCTGTACGACTTCGTCAACATCGCCTTCCTCAACGTCTACGGCAGCGGCCTTACCCCGGTGCTCAACCTCGCCGCCCACTGCAATCCGGACGCGGGGACCTGCAAGTCGCTCAGCTCCGAGATCAGCTCCTGCCAGCAGAGCGGCGTGAAGGTGCTCCTCTCCCTCGGCGGCGAGAGAGGTCAGTACTCCCTCTCCTCCGCCGACGACGCGCGTGGCGTCGCCGACTACCTCTGGAACACCTTCCTCGGCGGCAGCTCGGACTCGCGCCCCCTCGGCGACGCGGTGCTCGACGGCATCGACTTCGACATAGAGAAGGACGGTGACCACTACGACGAGCTGGCGATGGCCCTCTCGTCGAAATGCAACGGCGCGTGCGTGCTCACGGCGGCGCCGCAGTGCCCGTACCCGGACGCCCACCTCGACGCGGCGATCAAGACCGGGGTGTTCAGCCACGTTTGGGTGCAGTTCTACAACAACCGGCAGTGCCAGTACGCCAGCGGCGACGCGAGCGCGCTGCAGGCCGCGTGGGCGCAGTGGACGAGCGGCGTGCCGGCGCCCGCGGACGTCTTCCTGGGCCTGCCGACGGCGCCGGCCGCTGCACCGAGCGGAGGCTACA-TCGACGCGGACACGCTGCTGTCGCAGGTGCTACCGGCGGTGGAGGGCGCGGCGGCGAACTACG-GCGGAGTCATGCT-G-TGGAATCG-CTGGAGAGACGTGACCGCTGG-TTATGGCGCCAAGTTGAAGGGGAAAG-TTTGAAACA-AATTAAGCTACGCCTACGAACCATTCATATTCACAGGCGTTTGAAATAAGCATAGCCTTTTTAAATAGTTTTATGGATGTTTTCCGTGCTCCGGCCTCCCTCCGGTAGGGATAGAATGTACACCGACCGGACCTTGTTGATTTAATTTTG-CAAGTTGCATTTAAACTATGTGTCTATGTCTGTAATGAACTATG-TCCA-AATTGCATCTAAACTGTCTGTAATGAACCATGTCCATCAGTCCATGTTACATCTAAACTATGTTTGTACTGAATTGTTCAATCAATTCAATGTCAGTGTGTGCAAGTTTATGTAAAAA]

[+] EMBL AK106178             [GGAGCTAGAAATGGCTCCCAGGCTCTGCTGCTCTTCTCAATTCTTGCTCGCCGTCTCCTTCCTGGCCGCCTTCGCGGCCGTCTCCAACGCCGGCAAGGTGGCCGTCTACTGGGGGCAGGGGGCGGGCAACGGCGACGGCACCCTCGCCGAGACATGCGCCACCGGCCTGTACGACTTCGTCAACATCGCCTTCCTCAACGTCTACGGCAGCGGCCTTACCCCGGTGCTCAACCTCGCCGCCCACTGCAATCCGGACGCGGGGACCTGCAAGTCGCTCAGCTCCGAGATCAGCTCCTGCCAGCAGAGCGGCGTGAAGGTGCTCCTCTCCCTCGGCGGCGAGAGAGGTCAGTACTCCCTCTCCTCCGCCGACGACGCGCGTGGCGTCGCCGACTACCTCTGGAACACCTTCCTCGGCGGCAGCTCGGACTCGCGCCCCCTCGGCGACGCGGTGCTCGACGGCATCGACTTCGACATAGAGAAGGACGGTGACCACTACGACGAGCTGGCGATGGCCCTCTCGTCGAAATGCAACGGCGCGTGCGTGCTCACGGCGGCGCCGCAGTGCCCGTACCCGGACGCCCACCTCGACGCGGCGATCAAGACCGGGGTGTTCAGCCACGTTTGGGTGCAGTTCTACAACAACCGGCAGTGCCAGTACGCCAGCGGCGACGCGAGCGCGCTGCAGGCCGCGTGGGCGCAGTGGACGAGCGGCGTGCCGGCGCCCGCGGACGTCTTCCTGGGCCTGCCGACGGCGCCGGCCGCTGCACCGAGCGGAGGCTACA TCGACGCGGACACGCTGCTGTCGCAGGTGCTACCGGCGGTGGAGGGCGCGGCGGCGAACTACG GCGGAGTCATGCT G TGGAATCG CTGGAGAGACGTGACCGCTGG TTATGGCGCCAAGTTGAAGGGGAAAG TTTGAAACA AATTAAGCTACGCCTACGAACCATTCATATTCACAGGCGTTTGAAATAAGCATAGCCTTTTTAAATAGTTTTATGGATGTTTTCCGTGCTCCGGCCTCCCTCCGGTAGGGATAGAATGTACACCGACCGGACCTTGTTGATTTAATTTTG CAAGTTGCATTTAAACTATGTGTCTATGTCTGTAATGAACTATG TCCA AATTGCATCTAAACTGTCTGTAATGAACCATGTCCATCAGTCCATGT                                                                       ]
[+] EMBL BP185094             [                                                  acgaggCCTTCCTGGCCGCCTTCGCGGCCGTCTCCAACGCCGGCAAGGTGGCCGTCTACTGGGGGCAGGGGGCGGGCAACGGCGACGGCACCCTCGCCGAGACATGCGCCACCGGCCTGTACGACTTCGTCAACATCGCCTTCCTCAACGTCTACGGCAGCGGCCTTACCCCGGTGCTCAACCTCGCCGCCCACTGCAATCCGGACGCGGGGACCTGCAAGTCGCTCAGCTCCGAGATCAGCTCCTGCCAGCAGAGCGGCGTGAAGGTGCTCCTCTCCCTCGGCGGCGAGAGAGGTCAGTACTCCCTCTCCTCCGCCGACGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AB110201             [                                                                 CCGCCTTCGCGGCCGTCTCCAACGCCGGCAAGGTGGCCGTCTACTGGGGGCAGGGGGCGGGCAACGGCGACGGCACCCTCGCCGAGACATGCGCCACCGGCCTGTACGACTTCGTCAACATCGCCTTCCTCAACGTCTACGGCAGCGGCCTTACCCCGGTGCTCAACCTCGCCGCCCACTGCAATCCGGACGCGGGGACCTGCAAGTCGCTCAGCTCCGAGATCAGCTCCTGCCAGCAGAGCGGCGTGAAGGTGCTCCTCTCCCTCGGCGGCGAGAGAGGTCAGTACTCCCTCTCCTCCGCCGACGACGCGCGTGGCGTCGCCGACTACCTCTGGAACACCTTCCTCGGCGGCAGCTCGGACTCGCGCCCCCTCGGCGACGCGGTGCTCGACGGCATCGACTTCGACATAGAGAAGGACGGTGACCACTACGACGAGCTGGCGATGGCCCTCTCGTCGAAATGCAACGGCGCGTGCGTGCTCACGGCGGCGCCGCAGTGCCCGTACCCGGACGCCCACCTCGACGCGGCGATCAAGACCGGGGTGTTCAGCCACGTTTGGGTGCAGTTCTACAACAACCGGCAGTGCCAGTACGCCAGCGGCGACGCGAGCGCGCTGCAGGCCGCGTGGGCGCAGTGGACGAGCGGCGTGCCGGCGCCCGCGGACGTCTTCCTGGGCCTGCCGACGGCGCCGGCCGCTGCACCGAGCGGAGGCTACA TCGACGCGGACACGCTGCTGTCGCAGGTGCTACCGGCGGTGGAGGGCGCGGCGGCGAACTACG GCGGAGTCATGCT G TGGAATCG CTGGAGAGACGTGACCGCTGG TTATGGCGCCAAGTTGAAGGGGAAAG TTTGAAACA AATTAAGCTACGCCTACGAACCATTCATATTCACAGGCGTTTGAAATAAGCATAGCCTTTTTAAATAGTTTTATGGATGTTTTCCGTGCTCCGGCCTCCCTCCGGTAGGGATAGAATGTACACCGACCGGACCTTGTTGATTTAATTTTG CAAGTTGCATTTAAACTATGTGTCTATGTCTGTAATGAACTATG TCCA AATTGCATCTAAACTGTCTGTAATGAACCATGTCCATCAGTCCA                                                                          ]
[+] EMBL BI812925             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gtccagcaTGCACCGAGCGGAGGCTACATTCGACGCGGACACGCTGCTGTCCCAGGTGCTACC GCGGTGGAGGGC CGGCGGCGAACTACGCCCGGAGTCATGCTCGCTGGAATCGCCTGGAGAGACGTGACCGCTGGCTTATGGCGCCAAGTTGAAGGGGAAAGCTTTGAAACACAATTAAGCTACGCCTACGAACCATTCATATTCACAGGCGTTTGAAATAAGCATAGCCTTTTTAAATAGTTTTATGGATGTTTTCCGTGCTCCGGCCTCCCTCCGGTAGGGATAGAATGTACACCGACCGGACTTTGTTGATTTAATTTTGACAAGTTGCATTTAAACTATGTGTCTATGTCTGTAATGAACTATGCTCCACAATTGCATCTAAACTGTCTGTAATGAACCATGTCCATCAGTCCATGTTACATCTAAACTATGTTTGTACTGAATTGTTCAATCAATTCAATGTCAGTGTGTGCAAGTTTATGTAAAAA]


>consensus_6776#0 GGAGCTAGAAATGGCTCCCAGGCTCTGCTGCTCTTCTCAATTCTTGCTCGCCGTCTCCTT CCTGGCCGCCTTCGCGGCCGTCTCCAACGCCGGCAAGGTGGCCGTCTACTGGGGGCAGGG GGCGGGCAACGGCGACGGCACCCTCGCCGAGACATGCGCCACCGGCCTGTACGACTTCGT CAACATCGCCTTCCTCAACGTCTACGGCAGCGGCCTTACCCCGGTGCTCAACCTCGCCGC CCACTGCAATCCGGACGCGGGGACCTGCAAGTCGCTCAGCTCCGAGATCAGCTCCTGCCA GCAGAGCGGCGTGAAGGTGCTCCTCTCCCTCGGCGGCGAGAGAGGTCAGTACTCCCTCTC CTCCGCCGACGACGCGCGTGGCGTCGCCGACTACCTCTGGAACACCTTCCTCGGCGGCAG CTCGGACTCGCGCCCCCTCGGCGACGCGGTGCTCGACGGCATCGACTTCGACATAGAGAA GGACGGTGACCACTACGACGAGCTGGCGATGGCCCTCTCGTCGAAATGCAACGGCGCGTG CGTGCTCACGGCGGCGCCGCAGTGCCCGTACCCGGACGCCCACCTCGACGCGGCGATCAA GACCGGGGTGTTCAGCCACGTTTGGGTGCAGTTCTACAACAACCGGCAGTGCCAGTACGC CAGCGGCGACGCGAGCGCGCTGCAGGCCGCGTGGGCGCAGTGGACGAGCGGCGTGCCGGC GCCCGCGGACGTCTTCCTGGGCCTGCCGACGGCGCCGGCCGCTGCACCGAGCGGAGGCTA CATCGACGCGGACACGCTGCTGTCGCAGGTGCTACCGGCGGTGGAGGGCGCGGCGGCGAA CTACGGCGGAGTCATGCTGTGGAATCGCTGGAGAGACGTGACCGCTGGTTATGGCGCCAA GTTGAAGGGGAAAGTTTGAAACAAATTAAGCTACGCCTACGAACCATTCATATTCACAGG CGTTTGAAATAAGCATAGCCTTTTTAAATAGTTTTATGGATGTTTTCCGTGCTCCGGCCT CCCTCCGGTAGGGATAGAATGTACACCGACCGGACCTTGTTGATTTAATTTTGCAAGTTG CATTTAAACTATGTGTCTATGTCTGTAATGAACTATGTCCAAATTGCATCTAAACTGTCT GTAATGAACCATGTCCATCAGTCCATGTTACATCTAAACTATGTTTGTACTGAATTGTTC AATCAATTCAATGTCAGTGTGTGCAAGTTTATGTAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)