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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6781 cluster # 6781       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6781#0 length = 439 sequences # 2  
consensus_6781#1 length = 376 sequences # 2  

consensusID : consensus_6781#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 439
fasta sequence
                              [GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCGGGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAAAAAAACCCCCTGCCTGTGAAATTTGG]

[+] EMBL AU029456             [GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCGGGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAAAAAAA                     ]
[+] EMBL AK058993             [                                            ACGGGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACC AGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGACCCCCTGCCTGTGAAATTTGG]


>consensus_6781#0 GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCG GGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTC TTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCG ATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTT TTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTG AATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGC CATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAAAAAAACC CCCTGCCTGTGAAATTTGG



consensusID : consensus_6781#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 376
fasta sequence
                              [GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGAAAAAAA]

[+] EMBL AU173044             [GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGAAAAAAA]
[+] EMBL AK100797             [GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTG                                        ]


>consensus_6781#1 GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGC CTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGA GAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACAT CTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTG TGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTT AGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAA CTGAATGTGAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6781#0      GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCG 60
consensus_6781#1      -----------------------------------------------GGAGGGCTCATCG 13
                                                                     ********** **

consensus_6781#0      GGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTC 120
consensus_6781#1      GGGTCATGGGAGGGTTCATGTACGCCTACCA-GAACTCCGCCGGCCGCCTCATGGGCTTC 72
                      ******************************  ******** *******************

consensus_6781#0      TTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCG 180
consensus_6781#1      TTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCG 132
                      ************************************************************

consensus_6781#0      ATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTT 240
consensus_6781#1      ATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTT 192
                      ******************************** ********************** ****

consensus_6781#0      TTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTG 300
consensus_6781#1      TTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTG 252
                      ************************************************************

consensus_6781#0      AATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGC 360
consensus_6781#1      AATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGC 312
                      ************************************************************

consensus_6781#0      CATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAA----AAA 416
consensus_6781#1      CATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGAAA 372
                      *****************************************************    ***

consensus_6781#0      AACCCCCTGCCTGTGAAATTTGG 439
consensus_6781#1      AAAA------------------- 376
                      **                     




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)