These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6781#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 439 fasta sequence [GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCGGGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAAAAAAACCCCCTGCCTGTGAAATTTGG] [+] EMBL AU029456 [GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCGGGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAAAAAAA ] [+] EMBL AK058993 [ ACGGGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACC AGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGACCCCCTGCCTGTGAAATTTGG] consensusID : consensus_6781#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 376 fasta sequence [GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGAAAAAAA] [+] EMBL AU173044 [GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGAAAAAAA] [+] EMBL AK100797 [GGAGGGCTCATCGGGGTCATGGGAGGGTTCATGTACGCCTACCAGAACTCCGCCGGCCGCCTCATGGGCTTCTTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCGATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTTTTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTGAATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGCCATGGTTTAGTGGCAATTTGGTTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6781#0 GTACCTTTNCGGGATAAACCGGGGANCCCCGGGCCANCGATGTGACGGGAGGGCTCANCG 60 consensus_6781#1 -----------------------------------------------GGAGGGCTCATCG 13 ********** ** consensus_6781#0 GGGTCATGGGAGGGTTCATGTACGCCTACCNAGAACTCCGNCGGCCGCCTCATGGGCTTC 120 consensus_6781#1 GGGTCATGGGAGGGTTCATGTACGCCTACCA-GAACTCCGCCGGCCGCCTCATGGGCTTC 72 ****************************** ******** ******************* consensus_6781#0 TTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCG 180 consensus_6781#1 TTCCCCAACGACTCCGAGGTCGCCCGCTACAAGTACAAGCTGTAGTGAGAAACTTTATCG 132 ************************************************************ consensus_6781#0 ATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGNTGCAAGCGTTTACATCTTTTTTNTCTT 240 consensus_6781#1 ATTCGCTGCGTTCTCTCTCTCTCTCTCTGCTGCTGCAAGCGTTTACATCTTTTTTTTCTT 192 ******************************** ********************** **** consensus_6781#0 TTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTG 300 consensus_6781#1 TTTCCTGATGATCTCGTTTTAGCGTCACTTGTTGATGTGCGAGATGTGTGGCCTTGGCTG 252 ************************************************************ consensus_6781#0 AATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGC 360 consensus_6781#1 AATAAATGTTGTACGCTGCACGCTTGTGAGGAATTCGTGCTACAATTTAGCTCCCTTTGC 312 ************************************************************ consensus_6781#0 CATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAA----AAA 416 consensus_6781#1 CATGGTTTAGTGGCAATTTGGTTGCCGATCTGGTAAAAATTTATGGAACTGAATGTGAAA 372 ***************************************************** *** consensus_6781#0 AACCCCCTGCCTGTGAAATTTGG 439 consensus_6781#1 AAAA------------------- 376 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||