cluster # 6783

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Oryza sativa
cluster # 6783 cluster # 6783 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6783#0 length = 757 sequences # 2

consensus_6783#1 length = 527 sequences # 1
consensus_6783#2 length = 485 sequences # 1

consensusID : consensus_6783#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 757
fasta sequence

                              [TTATATATGTGTTTCTAGCCCTTTAAAAGTCAATACTAAAAAGAAACTACTTTGAAAATATCTTAAAATCAACTGTAAAATTAAGTTTGAAAATTCTAATTTTTTATTTTTGCTTTGGCTTATTAGGGCAACCAATGAGGCTTTTAGAAATTACAAGTACTGGTTTTATCATCATGGAAAAAATCAGTGGTAATTCCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAAGAATAATATCC-AAATTGTCACTTGAAACCAGGAACAACAATGGTTTGCACTTTGCAGCTCCGCATTCACCTTCCTTCGTCAATGTGTCCAGCTATCCCTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGTAGATCCAGAGTAGTAGGAGCTGGTGGCATAGCTAGTGTCACCCCCTCCTCTGAGTTGCCATTCAGTGATGTAGCTCGGTTTCGTCACCACCTCAGTCACCTCAATATCTCCAGCTAGAATTGCCATGACCCTGGACATCGATGGTCGCTGGTACGGTGAACCTTGAGTGCAAAGGAGTGCGGCACAAATGACTCTCAAGGCTTCCTTCTCATTGAATTCCTTGAGTTTTGGGTCTACGATCCCGAGTGCTTGCCCCCTCTCATATAGTGTCCAGGCCCATTCAAAGAGATAAATCTTATCTTCTTCGCGTGAGTTGTCGGTGTTTGGTCGACCAACAACAGTCTCCAAGGCGACTACCCCAA]

[+] EMBL CB629695             [TTATATATGTGTTTCTAGCCCTTTAAAAGTCAATACTAAAAAGAAACTACTTTGAAAATATCTTAAAATCAACTGTAAAATTAAGTTTGAAAATTCTAATTTTTTATTTTTGCTTTGGCTTATTAGGGCAACCAATGAGGCTTTTAGAAATTACAAGTACTGGTTTTATCATCATGGAAAAAATCAGTGGTAATTCCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAAGAATAATATCC AAATTGTCACTTGAAACCAGGAACAACAATGGTTTGCACTTTGCAGCTCCGCATTCACCTTCCTTCGTCAATGTGTCCAGCTATCCCTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGTAGATCCAGAGTAGTAGGAGCTGGTGGCATAGCTAGTGTCACCCCCTCCTCTGAGTTGCCATTCAGTGATGTAGCTCGGTTTCGTCACCACCTCAGTCACCTCAATATCTCCAGCTAGAATTGCCATGACCCTGGACATCGATGGTCGCTGGTACGGTGAACCTTGAGTGCAAAGGAGTGCGGCACAAATGACTCTCAAGGCTTCCTTCTCATTGAATTCCTTGAGTTTTGGGTCTACGATCCCGAGTGCTTGCCCCCTCTCATATAGTGTCCAGGCCCATTCAAAGAGATAAATCTTATCTTCTTCGCGTGAGTTG                                              ]
[+] EMBL CB637501             [                                                                                                                                                                                 acAAAATAA   GTACTTTCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATTGTCACTTGAAACCAGGAACAACAATGGTTTGCACTTTGCAGCTCTGCATTCACCTTCCTTCGTCAATGCGTCCAACTATCCCTGGATACCAGTTGAGAGGGGCGGGCTCCCTTTTTTCCCTGAACTCACCAGTAGTAGATCCAAAGTAGTAGGAGCTGGTGGCATAACTAGTGTCACCTCCTCCTCTGAGCTGCCATTCAGTGATGTAGCTCGGCTTCGTCACCACCTCAGTCACCTCAATATCTCCGGCTAGGATAGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGACCCTTGAGTGCAAAGGAGTGCGGCACAAATGACTCTCAAGGCTTCCTTCTCATTGAATTCCTTGAGTTTTGGGTCTACGATCCCGAGTGCTTGCCCGCTCTCATATAGTGTCCAGGCCCATTCAAAGAGATAGATCTTATCTTCTTCACGAAAGTTGTCGGTGTTTGGTCGACCAACAACAGTCTCCAAGGCGACTACCCCAA]




>consensus_6783#0
TTATATATGTGTTTCTAGCCCTTTAAAAGTCAATACTAAAAAGAAACTACTTTGAAAATA
TCTTAAAATCAACTGTAAAATTAAGTTTGAAAATTCTAATTTTTTATTTTTGCTTTGGCT
TATTAGGGCAACCAATGAGGCTTTTAGAAATTACAAGTACTGGTTTTATCATCATGGAAA
AAATCAGTGGTAATTCCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGG
CAAGAATAATATCCAAATTGTCACTTGAAACCAGGAACAACAATGGTTTGCACTTTGCAG
CTCCGCATTCACCTTCCTTCGTCAATGTGTCCAGCTATCCCTGGATACGAGTTGAGAGGG
GCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGTAGATCCAGAGTAGTAGGAGCTGGTG
GCATAGCTAGTGTCACCCCCTCCTCTGAGTTGCCATTCAGTGATGTAGCTCGGTTTCGTC
ACCACCTCAGTCACCTCAATATCTCCAGCTAGAATTGCCATGACCCTGGACATCGATGGT
CGCTGGTACGGTGAACCTTGAGTGCAAAGGAGTGCGGCACAAATGACTCTCAAGGCTTCC
TTCTCATTGAATTCCTTGAGTTTTGGGTCTACGATCCCGAGTGCTTGCCCCCTCTCATAT
AGTGTCCAGGCCCATTCAAAGAGATAAATCTTATCTTCTTCGCGTGAGTTGTCGGTGTTT
GGTCGACCAACAACAGTCTCCAAGGCGACTACCCCAA

consensusID : consensus_6783#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence

                              [TTTTTTTTTGGTCATCAGGGAAAAAAAATCAGAATAAGTACTTTCGTATTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATGTCACTTGAAACCAGGAACAACAAGGTTTGCACTTGCAGCTCTGCATTCACCTTCCTTCGTCAAGCGTCCAGCTATCCCGTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGTAGATCCAGAGTAGTAGGAGCTGGTGGCATAGCTAGTGTCACCTCCTCCTCTGAGCTGCCATTCAGGATGTAGCTCGGCTTCGTCACCACCTCAGTCACCTCAATATCTCCGGCTAGGATAGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGACCCTTGAGTGCAAAGGAGTGCGGACAGATGACTCTCAAGGTTCCTTCTCATTGAATTCCTTGAGTTTGGGTCTACGATCCCGAGTGCTTGCCGCGTCTCATATAGGGTGCAGGCCATTCAAAGAGATAG]

[-] EMBL BI812942             [TTTTTTTTTGGTCATCAGGGAAAAAAAATCAGAATAAGTACTTTCGTATTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATGTCACTTGAAACCAGGAACAACAAGGTTTGCACTTGCAGCTCTGCATTCACCTTCCTTCGTCAAGCGTCCAGCTATCCCGTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGTAGATCCAGAGTAGTAGGAGCTGGTGGCATAGCTAGTGTCACCTCCTCCTCTGAGCTGCCATTCAGGATGTAGCTCGGCTTCGTCACCACCTCAGTCACCTCAATATCTCCGGCTAGGATAGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGACCCTTGAGTGCAAAGGAGTGCGGACAGATGACTCTCAAGGTTCCTTCTCATTGAATTCCTTGAGTTTGGGTCTACGATCCCGAGTGCTTGCCGCGTCTCATATAGGGTGCAGGCCATTCAAAGAGATAG]




>consensus_6783#1
TTTTTTTTTGGTCATCAGGGAAAAAAAATCAGAATAAGTACTTTCGTATTGTTTTCTGCA
ACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATGTCACTTGAAACCA
GGAACAACAAGGTTTGCACTTGCAGCTCTGCATTCACCTTCCTTCGTCAAGCGTCCAGCT
ATCCCGTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGT
AGATCCAGAGTAGTAGGAGCTGGTGGCATAGCTAGTGTCACCTCCTCCTCTGAGCTGCCA
TTCAGGATGTAGCTCGGCTTCGTCACCACCTCAGTCACCTCAATATCTCCGGCTAGGATA
GCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGACCCTTGAGTGCAAAGGAGTGCG
GACAGATGACTCTCAAGGTTCCTTCTCATTGAATTCCTTGAGTTTGGGTCTACGATCCCG
AGTGCTTGCCGCGTCTCATATAGGGTGCAGGCCATTCAAAGAGATAG

consensusID : consensus_6783#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [TTTTTTGAAAAAAAATCAGAATAAGTACTTTCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATTTGTCACTTGAAACCAGGAACAACAATGGTTTGGACTTTGGAGCTCTGCATTCACCTTCCTTCGTCAATGCGTCCAGCTATCCCTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGGTAAGAATCCAGAGGTAGGTAGGAGCTGGTGGGCATAAGCTAGGTGGTCACCTCCTCCCTCTGGAGGCTGGNCATTCACGGTGACATGGTAAGCTCGGGCTTCGGTACAACACCTCAGTCACCTCAATATCTCCGGGTAGGATAGGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGAACCTTGAGTGCAAAGGAGTGCGGNACAGATGACTCTCAAGGGTTCCTTCTCATTGAATTCCTTGAGTTGGG]

[-] EMBL BI812814             [TTTTTTGAAAAAAAATCAGAATAAGTACTTTCGTATTTGTTTTCTGCAACTTACATCAACATACAATTATATAGGCAGGAATAATATCCAAAATTTGTCACTTGAAACCAGGAACAACAATGGTTTGGACTTTGGAGCTCTGCATTCACCTTCCTTCGTCAATGCGTCCAGCTATCCCTGGATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGGTAAGAATCCAGAGGTAGGTAGGAGCTGGTGGGCATAAGCTAGGTGGTCACCTCCTCCCTCTGGAGGCTGGNCATTCACGGTGACATGGTAAGCTCGGGCTTCGGTACAACACCTCAGTCACCTCAATATCTCCGGGTAGGATAGGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGAACCTTGAGTGCAAAGGAGTGCGGNACAGATGACTCTCAAGGGTTCCTTCTCATTGAATTCCTTGAGTTGGG]




>consensus_6783#2
TTTTTTGAAAAAAAATCAGAATAAGTACTTTCGTATTTGTTTTCTGCAACTTACATCAAC
ATACAATTATATAGGCAGGAATAATATCCAAAATTTGTCACTTGAAACCAGGAACAACAA
TGGTTTGGACTTTGGAGCTCTGCATTCACCTTCCTTCGTCAATGCGTCCAGCTATCCCTG
GATACGAGTTGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGGTAAGAATC
CAGAGGTAGGTAGGAGCTGGTGGGCATAAGCTAGGTGGTCACCTCCTCCCTCTGGAGGCT
GGNCATTCACGGTGACATGGTAAGCTCGGGCTTCGGTACAACACCTCAGTCACCTCAATA
TCTCCGGGTAGGATAGGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGAACCTTG
AGTGCAAAGGAGTGCGGNACAGATGACTCTCAAGGGTTCCTTCTCATTGAATTCCTTGAG
TTGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6783#0      TTATATATGTGTTTCTAGCCCTTTAAAAGTCAATACTAAAAAGAAACTACTTTGAAAATA 60
consensus_6783#1      ------------------------------------------------------------
consensus_6783#2      ------------------------------------------------------------
                                                                                  

consensus_6783#0      TCTTAAAATCAACTGTAAAATTAAGTTTGAAAATTCTAATTTTTTATTTTTGCTTTGGCT 120
consensus_6783#1      ------------------------------------------------------------
consensus_6783#2      ------------------------------------------------------------
                                                                                  

consensus_6783#0      TATTAGGGCAACCAATGAGGCTTTTAGAAATTACAAGTACTGGTTTTATCATCATGGAAA 180
consensus_6783#1      -------------------------------------TTTTTTTTTGGTCATCAGGGAAA 23
consensus_6783#2      --------------------------------------------------TTTTTTGAAA 10
                                                                         *    ****

consensus_6783#0      AAA--TCAGTG---GTAATTCCGTATTTGTTTTCTGCAACTTACATCAACATACAATTAT 235
consensus_6783#1      AAAAATCAGAATAAGTACTTTCGTATT-GTTTTCTGCAACTTACATCAACATACAATTAT 82
consensus_6783#2      AAAAATCAGAATAAGTACTTTCGTATTTGTTTTCTGCAACTTACATCAACATACAATTAT 70
                      ***  ****     *** ** ****** ********************************

consensus_6783#0      ATAGGCAAGAATAATATCCAAA--TTGTCACTTGAAACCAGGAACAACAATGGTTTGCAC 293
consensus_6783#1      ATAGGCAGGAATAATATCCAAA--ATGTCACTTGAAACCAGGAACAACAA-GGTTTGCAC 139
consensus_6783#2      ATAGGCAGGAATAATATCCAAAATTTGTCACTTGAAACCAGGAACAACAATGGTTTGGAC 130
                      ******* **************   ************************* ****** **

consensus_6783#0      TTTGCAGCTCCGCATTCACCTTCCTTCGTCAATGTGTCCAGCTATCCC-TGGATACGAGT 352
consensus_6783#1      TT-GCAGCTCTGCATTCACCTTCCTTCGTCAA-GCGTCCAGCTATCCCGTGGATACGAGT 197
consensus_6783#2      TTTGGAGCTCTGCATTCACCTTCCTTCGTCAATGCGTCCAGCTATCCC-TGGATACGAGT 189
                      ** * ***** ********************* * ************* ***********

consensus_6783#0      TGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGT---AGATCCAGAGT--A 407
consensus_6783#1      TGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGT---AGATCCAGAGT--A 252
consensus_6783#2      TGAGAGGGGCGGTCTCCCTCTTCTCCCTGAACTCACCAGTAGGTAAGAATCCAGAGGTAG 249
                      ******************************************      ********    

consensus_6783#0      GTAGGAGCTGGTGG-CATA-GCTAGT--GTCACCCCCTCC-TCTGAG---TTGCCATTCA 459
consensus_6783#1      GTAGGAGCTGGTGG-CATA-GCTAGT--GTCACCTCCTCC-TCTGAG---CTGCCATTCA 304
consensus_6783#2      GTAGGAGCTGGTGGGCATAAGCTAGGTGGTCACCTCCTCCCTCTGGAGGCTGGNCATTCA 309
                      ************** **** *****   ****** ***** ****       * ******

consensus_6783#0      --GTGATGT----AGCTCGG-TTTCGTCAC--CACCTCAGTCACCTCAATATCTCCAGCT 510
consensus_6783#1      --G-GATGT----AGCTCGG-CTTCGTCAC--CACCTCAGTCACCTCAATATCTCCGGCT 354
consensus_6783#2      CGGTGACATGGTAAGCTCGGGCTTCGGTACAACACCTCAGTCACCTCAATATCTCCGGGT 369
                        * **  *    *******  ****  **  ************************ * *

consensus_6783#0      AGAATTG-CCATGACCCTGGACATCGATGGTCGCTGGTACGGTGAACCTTGAGTGCAAAG 569
consensus_6783#1      AGGATAG-CCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGACCCTTGAGTGCAAAG 413
consensus_6783#2      AGGATAGGCCATGACTCTGGACATTGATGGCCGCTGGTGTGGTGAACCTTGAGTGCAAAG 429
                      ** ** * ******* ******** ***** *******  ***** **************

consensus_6783#0      GAGTGCGGCACAAATGACTCTCAAGGCTTCCTTCTCATTGAATTCCTTGAGTTTTGGGTC 629
consensus_6783#1      GAGTGCGG-ACAGATGACTCTCAAGG-TTCCTTCTCATTGAATTCCTTGAGTTT-GGGTC 470
consensus_6783#2      GAGTGCGGNACAGATGACTCTCAAGGGTTCCTTCTCATTGAATTCCTTGAGTTGGG---- 485
                      ******** *** ************* **************************  *    

consensus_6783#0      TACGATCCCGAGTGCTTGCCCCCTCTCATATAGTGTCCAGGCCCATTCAAAGAGATAAAT 689
consensus_6783#1      TACGATCCCGAGTGCTTGCCGCGTCTCATATAGGGTGCAGGCC-ATTCAAAGAGATAG-- 527
consensus_6783#2      ------------------------------------------------------------
                                                                                  

consensus_6783#0      CTTATCTTCTTCGCGTGAGTTGTCGGTGTTTGGTCGACCAACAACAGTCTCCAAGGCGAC 749
consensus_6783#1      ------------------------------------------------------------
consensus_6783#2      ------------------------------------------------------------
                                                                                  

consensus_6783#0      TACCCCAA 757
consensus_6783#1      --------
consensus_6783#2      --------