cluster # 6784

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Oryza sativa
cluster # 6784 cluster # 6784 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6784#0 length = 576 sequences # 3

consensus_6784#1 length = 423 sequences # 1

consensusID : consensus_6784#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 576
fasta sequence

                              [AATACACTCGTGTATGAGTACATCTATTACTCCAGAATTGTTCTAACGTAAGGAAGCATGCGGTACCATTTTTGCAGAGCCATCAACCAAGACATGGCGACCAAGTACATCGTCGGATCAGTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGGCGTTTACTTCGCCGACAAAAAGGTTTTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAATGGGGGAAAGTGACCGAGGAGAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCTCCATGAACCCAGTCACCCGCCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAAAGAAGGCATCCGAGCCCTGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGCTAAAACATTCTGTGGCAGTTACAAATAAATTACATCGAATGGGTGTAATAGATTAAGAATGTTGTTTGAAGTGTGTTACTGCTTAAGCTTTGATTTTTCATACCTGACATGTTTGTAGAGCATCAGCTGAGTGGTGACTTCAAGCAGCAGGACATCATATCATCGAATTTTCGTCAAAAAA]

[+] EMBL C97991               [AATACACTCGTGTATGAGTACATCTATTACTCCAGAATTGTTCTAACGTAAGGAAGCATGCGGTACCATTTTTGCAGAGCCATCAACCAAGACATGGCGACCAAGTACATCGTCGGATCAGTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGGCGTTTACTTCGCCGACAAAAAGGTTTTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAATGGGGGAAAGTGACCGAGGAGAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCTCCATGAACCCAGTCACCCGNCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAAAGAAGGCATCCGAGCCCTGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGCTAAAACATTCTGTGGCAGTTACAAATAAATTACATCGAATGGGTGTAATAGATTAAGAATGTTGTTTGAAGTGTGTTACTGCTTAAGCTTTGATTTTTCATACCTGACATGTTTGTAGAGCATCAGCTGAGTGGTGACTTCAAGCAGCAGGACATCATATCATCGAATTTTCGTCAAAAAA]
[+] EMBL C97990               [       TCGTGTATGAGTACATCTATTACTCCAGAATTGTTCTAACGTAAGGAAGCATGCGGTACCATTTTTGCAGAGCCATCAACCAAGACATGGCGACCAAGTACATCGTCGGATCAGTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGGCGTTTACTTCGCCGACAAAAAGGTTTTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAATGGGGGAAAGTGACCGAGGAGAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCTCCATGAACCCAGTCACCCGCCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAAAGAAGGCATCCGAGCCCTGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGCTAAAACATTCTGTGGCAGT                                                                                                                                                                  ]
[+] EMBL AF257779             [            TATGAGTACATCTATTACTCCAGAATTGTTCTAACGTAAGGAAGCATGCGGTACCATTTTTGCAGAGCCATCAACCAAGACATGGCGACCAAGTACATCGTCGGATCAGTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGGCGTTTACTTCGCCGACAAAAAGGTTTTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAATGGGGGAAAGTGACCGAGGAGAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCTCCATGAACCCAGTCACCCGCCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAAAGAAGGCATCCGAGCCCTGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGCTAAAACATTCTGTGGCAGTTACAAATAAATTACATCGAATGGGTGTAATAGATTAAGAATGTTGTTTGAAGTGTGTTACTGCTTAAGCTTTGATTTTTCATACCTGACATGTTTGTAGAGCATCAGCTGAGTGGTGACTTCAAGCAGCAGGACATCATATCATCGAATTTTCGTCAAAAAA]




>consensus_6784#0
AATACACTCGTGTATGAGTACATCTATTACTCCAGAATTGTTCTAACGTAAGGAAGCATG
CGGTACCATTTTTGCAGAGCCATCAACCAAGACATGGCGACCAAGTACATCGTCGGATCA
GTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGGCGTTTACTTCGCCGACAAAAAGGTT
TTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAATGGGGGAAAGTGACCGAGGAG
AAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCTCCATGAACCCAGTCACCCGC
CAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAAAGAAGGCATCCGAGCCC
TGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGCTAAAACATTCTGTGGCAGTTACAAA
TAAATTACATCGAATGGGTGTAATAGATTAAGAATGTTGTTTGAAGTGTGTTACTGCTTA
AGCTTTGATTTTTCATACCTGACATGTTTGTAGAGCATCAGCTGAGTGGTGACTTCAAGC
AGCAGGACATCATATCATCGAATTTTCGTCAAAAAA

consensusID : consensus_6784#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 423
fasta sequence

                              [GGCGACCAAGTACATCGTCGGATCAGTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGGCGTTTACTTCGCCGACACAAAAGGTTTTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAATGGGGGAAAGTGACCGAGGAGAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCGCCATGAACCCAGTCACCCGCCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAAGAAGGCATCCGAGCCCTGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGCTAAAACACTTCTGTGGCAGTTACAAATAAATTACATCGAATGGGTGTAATAGATTAAGAATGTTGTTTGAAGTGTGTTACTGCTTAAGCTTTGATTTTTCATAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI796489             [GGCGACCAAGTACATCGTCGGATCAGTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGGCGTTTACTTCGCCGACACAAAAGGTTTTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAATGGGGGAAAGTGACCGAGGAGAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCGCCATGAACCCAGTCACCCGCCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAAGAAGGCATCCGAGCCCTGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGCTAAAACACTTCTGTGGCAGTTACAAATAAATTACATCGAATGGGTGTAATAGATTAAGAATGTTGTTTGAAGTGTGTTACTGCTTAAGCTTTGATTTTTCATAAAAAAAAAAAAAAAAAAAAA]




>consensus_6784#1
GGCGACCAAGTACATCGTCGGATCAGTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGG
CGTTTACTTCGCCGACACAAAAGGTTTTAGGAGGCACAACTCCTCGCACGGTGGCAGACA
AGGAATGGGGGAAAGTGACCGAGGAGAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGC
CGGTCGCCATGAACCCAGTCACCCGCCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTT
CAGGGTCAAGAAGGCATCCGAGCCCTGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGC
TAAAACACTTCTGTGGCAGTTACAAATAAATTACATCGAATGGGTGTAATAGATTAAGAA
TGTTGTTTGAAGTGTGTTACTGCTTAAGCTTTGATTTTTCATAAAAAAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6784#0      AATACACTCGTGTATGAGTACATCTATTACTCCAGAATTGTTCTAACGTAAGGAAGCATG 60
consensus_6784#1      ------------------------------------------------------------
                                                                                  

consensus_6784#0      CGGTACCATTTTTGCAGAGCCATCAACCAAGACATGGCGACCAAGTACATCGTCGGATCA 120
consensus_6784#1      -----------------------------------GGCGACCAAGTACATCGTCGGATCA 25
                                                         *************************

consensus_6784#0      GTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGGCGTTTACTTCGCCGACA-AAAAGGT 179
consensus_6784#1      GTGACGGCATCCTTTGCCTTTGCTTATGTTTGCGGCGTTTACTTCGCCGACACAAAAGGT 85
                      **************************************************** *******

consensus_6784#0      TTTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAATGGGGGAAAGTGACCGAGGA 239
consensus_6784#1      TTTAGGAGGCACAACTCCTCGCACGGTGGCAGACAAGGAATGGGGGAAAGTGACCGAGGA 145
                      ************************************************************

consensus_6784#0      GAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCTCCATGAACCCAGTCACCCG 299
consensus_6784#1      GAAGCTCGACGCATGGCCTCGCGTTGCAGGGAAGCCGGTCGCCATGAACCCAGTCACCCG 205
                      **************************************** *******************

consensus_6784#0      CCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAAAGAAGGCATCCGAGCC 359
consensus_6784#1      CCAGAACTACGTTCTGGTGAAGAAGAAGAAGGCTTCAGGGTCAA-GAAGGCATCCGAGCC 264
                      ******************************************** ***************

consensus_6784#0      CTGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGCTAAAACA-TTCTGTGGCAGTTACA 418
consensus_6784#1      CTGAAAACTGCAAGGAGAGAGTTTGCTGTGAGGTGCTAAAACACTTCTGTGGCAGTTACA 324
                      ******************************************* ****************

consensus_6784#0      AATAAATTACATCGAATGGGTGTAATAGATTAAGAATGTTGTTTGAAGTGTGTTACTGCT 478
consensus_6784#1      AATAAATTACATCGAATGGGTGTAATAGATTAAGAATGTTGTTTGAAGTGTGTTACTGCT 384
                      ************************************************************

consensus_6784#0      TAAGCTTTGATTTTTCATACCTGACATGTTTGTAGAGCATCAGCTGAGTGGTGACTTCAA 538
consensus_6784#1      TAAGCTTTGATTTTTCATAAAAAAAAAAAAAAAAAAAAA--------------------- 423
                      *******************    * *       * *  *                     

consensus_6784#0      GCAGCAGGACATCATATCATCGAATTTTCGTCAAAAAA 576
consensus_6784#1      --------------------------------------