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Oryza sativa
cluster # 6785 cluster # 6785       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6785#0 length = 1159 sequences # 4  

consensusID : consensus_6785#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1159
fasta sequence
                              [GAGGCGAGGGTGGGCTTAGTGCATGGCTATTCCCTCTCTGCCTTAGCTAGATCAAGCTAGCTCCTTTTCATTCTTGGAGAAGGATCGATTAGGAAGATAAGTTCTTCGCAAATATAGATAGCTTCTTTTCTTAATTTTCTCCTTCTCAGTTCTCGTTTTTTTCTTCTTGATCGAAACCGATCGATCATATATATAGTTAGCTAGCATCCTTGTTGTTTTTAATCCCAAGGATCTAGTTAATTAATTACTTCTTGCAAATTTCATGCAAAAACTGATACACAGACACAAGTTCGATATAATTTAATTTCGAGCTTTGATCATATCGTCCCCTTGATCTTTTCCTTCTCTCTTTGGAAATCCCATCAAGGCTCCATATTTCCTTTTGTGGAAAAACGCCTTAGATCGACGATCTGAGCGAGAAATTCGAATTACTTTTCGTCTCCTCCTAGAGATCATCATGGACAACGTTCTTCTGGATCGCCGGTCTTCCGGGAGCTTCGAGTTCCCGAGGAGAGGCGGCGGATTCCGGCCGGGGCACCTCGGCGGCGGCGCGACGCCGGCGATGGCGCCACGCCAGCAATACAAAGGTGGCGCGTGGAGCCATGCATCACTACCCGCGCTCCCGTACGCGAGGCCTCCGCTGTACTCGTCGCCGTCTCTGCCTCTCCTGCCGTCCAACCAGCCACCTCTCCTGCCGCTCCCACCCGCCGCCACCAAGTACGCCACTTTCCCGTACCCGCCTCCGCCGCAGCAGCCGCCGCGCAGCGGCAGAGCTAGTACTCCGTCGACGCGCCAGAGGGACAGGAGGAGGAAGCCGTCGAGGCCGCCGCCGTCGACGGAGACGACGAAGGGAGGAACACAGAAGAAGAAGCCGCTGGAGCGGGCAACGCCGCTGCCGCCGGCGCCGGCGGTGGCGGAGGCCCTGGACGACCTGGAGCAGGAGGTGGCCCGCAACTTCGTCCAGGACCTGCTGCACGTGCTCGCGCCGCCGCCGAGCAGCCTGCCGCTGCCCAGGTTCGTGATCACGTCGTCGTCGTCGTCCCCCGCCGCCGGCAACAAGGTGGTGCCGCCTCCGCCGCCCGCCCCGTCATGCAACGCCGAGGCGGCCGCCGCCGACAGCCTCCGCCGCGTCCTCCGCCTCTAGGATCGATCGATCTAT]

[+] EMBL AK065146             [GAGGCGAGGGTGGGCTTAGTGCATGGCTATTCCCTCTCTGCCTTAGCTAGATCAAGCTAGCTCCTTTTCATTCTTGGAGAAGGATCGATTAGGAAGATAAGTTCTTCGCAAATATAGATAGCTTCTTTTCTTAATTTTCTCCTTCTCAGTTCTCGTTTTTTTCTTCTTGATCGAAACCGATCGATCATATATATAGTTAGCTAGCATCCTTGTTGTTTTTAATCCCAAGGATCTAGTTAATTAATTACTTCTTGCAAATTTCATGCAAAAACTGATACACAGACACAAGTTCGATATAATTTAATTTCGAGCTTTGATCATATCGTCCCCTTGATCTTTTCCTTCTCTCTTTGGAAATCCCATCAAGGCTCCATATTTCCTTTTGTGGAAAAACGCCTTAGATCGACGATCTGAGCGAGAAATTCGAATTACTTTTCGTCTCCTCCTAGAGATCATCATGGACAACGTTCTTCTGGATCGCCGGTCTTCCGGGAGCTTCGAGTTCCCGAGGAGAGGCGGCGGATTCCGGCCGGGGCACCTCGGCGGCGGCGCGACGCCGGCGATGGCGCCACGCCAGCAATACAAAGGTGGCGCGTGGAGCCATGCATCACTACCCGCGCTCCCGTACGCGAGGCCTCCGCTGTACTCGTCGCCGTCTCTGCCTCTCCTGCCGTCCAACCAGCCACCTCTCCTGCCGCTCCCACCCGCCGCCACCAAGTACGCCACTTTCCCGTACCCGCCTCCGCCGCAGCAGCCGCCGCGCAGCGGCAGAGCTAGTACTCCGTCGACGCGCCAGAGGGACAGGAGGAGGAAGCCGTCGAGGCCGCCGCCGTCGACGGAGACGACGAAGGGAGGAACACAGAAGAAGAAGCCGCTGGAGCGGGCAACGCCGCTGCCGCCGGCGCCGGCGGTGGCGGAGGCCCTGGACGACCTGGAGCAGGAGGTGGCCCGCAACTTCGTCCAGGACCTGCTGCACGTGCTCGCGCCGCCGCCGAGCAGCCTGCCGCTGCCCAGGTTCGTGATCACGTCGTCGTCGTCGTCCCCCGCCGCCGGCAAC                                                                                                      ]
[+] EMBL AU174193             [                            ATTCCCTCTCTGCCTTAGCTAGATCAAGCTAGCTCCTTTTCATTCTTGGAGAAGGATCGATTAGGAAGATAAGTTCTTCGCAAATATAGATAGCTTCTTTTCTTAATTTTCTCCTTCTCAGTTCTCGTTTTTTTCTTCTTGATCGAAACCGATCGATCATATATATAGTTAGCTAGCATCCTTGTTGTTTTTAATCCCAAGGATCTAGTTAATTAATTACTTCTTGCAAATTTCATGCAAAAACTGATACACAGACACAAGTTCGATATAATTTAATTTCGAGCTTTGATCATATCGTCCCCTTGATCTTTTCCTTCTCTCTTTGGAAATCCCATCAAGGCTCCATATTTCCTTTTGTGGAAAAACGCCTTAGATCGACGATCTGAGCGAGAAATTCGAATTACTTTTCGTCTCCTCCTAGAGATCATCATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AK069304             [                                                                                                                                                                               ACCGATCGATCATATATATAGTTAGCTAGCATCCTTGTTGTTTTTAATCCCAAGGATCTAGTTAATTAATTACTTCTTGCAAATTTCATGCAAAAACTGATACACAGACACAAGTTCGATATAATTTAATTTCGAGCTTTGATCATATCGTCCCCTTGATCTTTTCCTTCTCTCTTTGGAAATCCCATCAAGGCTCCATATTTCCTTTTGTGGAAAAACGCCTTAGATCGACGATCTGAGCGAGAAATTCGAATTACTTTTCGTCTCCTCCTAGAGATCATCATGGACAACGTTCTTCTGGATCGCCGGTCTTCCGGGAGCTTCGAGTTCCCGAGGAGAGGCGGCGGATTCCGGCCGGGGCACCTCGGCGGCGGCGCGACGCCGGCGATGGCGCCACGCCAGCAATACAAAGGTGGCGCGTGGAGCCATGCATCACTACCCGCGCTCCCGTACGCGAGGCCTCCGCTGTACTCGTCGCCGTCTCTGCCTCTCCTGCCGTCCAACCAGCCACCTCTCCTGCCGCTCCCACCCGCCGCCACCAAGTACGCCACTTTCCCGTACCCGCCTCCGCCGCAGCAGCCGCCGCGCAGCGGCAGAGCTAGTACTCCGTCGACGCGCCAGAGGGACAGGAGGAGGAAGCCGTCGAGGCCGCCGCCGTCGACGGAGACGACGAAGGGAGGAACACAGAAGAAGAAGCCGCTGGAGCGGGCAACGCCGCTGCCGCCGGCGCCGGCGGTGGCGGAGGCCCTGGACGACCTGGAGCAGGAGGTGGCCCGCAACTTCGTCCAGGACCTGCTGCACGTGCTCGCGCCGCCGCCGAGCAGCCTGCCGCTGCCCAGGTTCGTGATCACGTCGTCGTCGTCGTCCCCCGCCGCCGGCAACAAGGTGGTGCCGCCTCCGCCGCCCGCCCCGTCATGCAACGCCGAGGCGGCCGCCGCCGACAGCCTCCGCCGCGTCCTCCGCCTCTAGGATCGATCGATCTAT]
[+] EMBL AU184360             [                                                                                                                                                                                                                                                                                                                  TCGAGCTTTGATCATATCGTCCCCTTGATCTTTTCCTTCTCTCTTTGGAAATCCCATCAAGGCTCCATATTTCCTTTTGTGGAAAAACGCCTTAGATCGACGATCTGAGCGAGAAATTCGAATTACTTTTCGTCTCCTCCTAGAGATCATCATGGACAACGTTCTTCTGGATCGCCGGTCTTCCGGGAGCTTCGAGTTCCCGAGGAGAGGCGGCGGATTCCGGCCGGGGCACCTCGGCGGCGGCGCGACGCCGGCGATGGCGCCACGCCAGCAATACAAAGGTGGCGCGTGGAGCCATGCATCACTACCCGCGCTCCCGTACGCGAGGCCTCCGCTGTACTCGTCGCCGTCTCTGCCTCTCCTGCCGTCCAACCAGCCACCTCTCCTGCCGCTCCCACCCGCCGCCACCAAGTACGCCACTTTCCCGTACCCGCCTC                                                                                                                                                                                                                                                                                                                                                                                                                                ]


>consensus_6785#0 GAGGCGAGGGTGGGCTTAGTGCATGGCTATTCCCTCTCTGCCTTAGCTAGATCAAGCTAG CTCCTTTTCATTCTTGGAGAAGGATCGATTAGGAAGATAAGTTCTTCGCAAATATAGATA GCTTCTTTTCTTAATTTTCTCCTTCTCAGTTCTCGTTTTTTTCTTCTTGATCGAAACCGA TCGATCATATATATAGTTAGCTAGCATCCTTGTTGTTTTTAATCCCAAGGATCTAGTTAA TTAATTACTTCTTGCAAATTTCATGCAAAAACTGATACACAGACACAAGTTCGATATAAT TTAATTTCGAGCTTTGATCATATCGTCCCCTTGATCTTTTCCTTCTCTCTTTGGAAATCC CATCAAGGCTCCATATTTCCTTTTGTGGAAAAACGCCTTAGATCGACGATCTGAGCGAGA AATTCGAATTACTTTTCGTCTCCTCCTAGAGATCATCATGGACAACGTTCTTCTGGATCG CCGGTCTTCCGGGAGCTTCGAGTTCCCGAGGAGAGGCGGCGGATTCCGGCCGGGGCACCT CGGCGGCGGCGCGACGCCGGCGATGGCGCCACGCCAGCAATACAAAGGTGGCGCGTGGAG CCATGCATCACTACCCGCGCTCCCGTACGCGAGGCCTCCGCTGTACTCGTCGCCGTCTCT GCCTCTCCTGCCGTCCAACCAGCCACCTCTCCTGCCGCTCCCACCCGCCGCCACCAAGTA CGCCACTTTCCCGTACCCGCCTCCGCCGCAGCAGCCGCCGCGCAGCGGCAGAGCTAGTAC TCCGTCGACGCGCCAGAGGGACAGGAGGAGGAAGCCGTCGAGGCCGCCGCCGTCGACGGA GACGACGAAGGGAGGAACACAGAAGAAGAAGCCGCTGGAGCGGGCAACGCCGCTGCCGCC GGCGCCGGCGGTGGCGGAGGCCCTGGACGACCTGGAGCAGGAGGTGGCCCGCAACTTCGT CCAGGACCTGCTGCACGTGCTCGCGCCGCCGCCGAGCAGCCTGCCGCTGCCCAGGTTCGT GATCACGTCGTCGTCGTCGTCCCCCGCCGCCGGCAACAAGGTGGTGCCGCCTCCGCCGCC CGCCCCGTCATGCAACGCCGAGGCGGCCGCCGCCGACAGCCTCCGCCGCGTCCTCCGCCT CTAGGATCGATCGATCTAT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)