These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1409 fasta sequence [TTGCTACTGTTGTTTTGGAAGCGATAGCTTGGAGTTGTAAGGTGAGGTGAGGTGCAGGGTGGTCGATCAGTAGGTGGAAAGGAGGAATCGAGGAGATGGACGGCGAGATTGGGGAGGACATGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGGCCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCACCTCCGGTGTGCTGTACCAGGAAGGCCGGGGCGGCGGCGGCGGCGGCGGCGGCGAAGGGAGGAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCGTGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGTGCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACCCGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGCTGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCCCCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGCTCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGATCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCGCGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCCGCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGGCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTC-GTCGCCGGCGAGGCGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGATGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCAAGTGTCCAACTGTACAAAGAAGGTACAAGACAATC-AAAG-CCCCAAAGGGAAAAATATATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK069276 [TTGCTACTGTTGTTTTGGAAGCGATAGCTTGGAGTTGTAAGGTGAGGTGAGGTGCAGGGTGGTCGATCAGTAGGTGGAAAGGAGGAATCGAGGAGATGGACGGCGAGATTGGGGAGGACATGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGGCCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCACCTCCGGTGTGCTGTACCAGGAAGGCCGGGGCGGCGGCGGCGGCGGCGGCGGCGAAGGGAGGAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCGTGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGTGCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACCCGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGCTGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCCCCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGCTCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGATCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCGCGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCCGCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGGCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTC GTCGCCGGCGAGGCGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGATGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCGAGTGTCCAACTGTACAAAGAAGGTA ] [+] EMBL BI800629 [ CGCGTCCAGCGACGGCACGC CCTCAAGTTCTGGGAGCTCAAGAACGC GCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCTGTCGCCGGCGAGGCGAGCGGAGCTTGCCA GCCGTCACCTTCTTGTTCATGGCGTTCCATCCGGACAGGGAGATGGTGTACCTGT GACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGA GTC GGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTT GCTGTTTCCGTTCTCGCGCCATCTGGCC CCAGCTTGGCCTGATTGGTCTATGTGGCTGATA GCTGGCC GCGATGTTGAC ATGGCATGTGGGCCC ATGCTTGTCTGCAACATTGGGCAC AT CCGTTCCGTTCAAGTGTCCAACTGTAC AAGAAGGTACAAGACAATC AAAG CCCCAAAGGGAAAAATATATGCTAAAAA ] [+] EMBL CA756720 [ CGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCAAGTGTCCAACTGTACAAAGAAGGTACAAGACAATCAAAAGAAAAAAAAGGGAAAAATATATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1179 fasta sequence [TCGAGGAGATGGACGGCGAGATTGGGGAGGACATGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGGCCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCACCTCCGGTGTGCTGTACCAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCGTGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGTGCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACCCGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGCTGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCCCCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGCTCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGATCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCGCGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCCGCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGGCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCGTCGCCGGCGAGGCGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGATGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCGAGTGTCCAACTGTACAAAGAAGGTACAAGA] [+] EMBL AK061090 [TCGAGGAGATGGACGGCGAGATTGGGGAGGACATGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGGCCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCACCTCCGGTGTGCTGTACCAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCGTGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGTGCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACCCGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGCTGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCCCCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGCTCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGATCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCGCGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCCGCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGGCCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCGTCGCCGGCGAGGCGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGATGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCGAGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTTGGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTGATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGGGCACAATGCCGTTCCGTTCGAGTGTCCAACTGTACAAAGAAGGTACAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6788#0 TTGCTACTGTTGTTTTGGAAGCGATAGCTTGGAGTTGTAAGGTGAGGTGAGGTGCAGGGT 60 consensus_6788#1 ------------------------------------------------------------ consensus_6788#0 GGTCGATCAGTAGGTGGAAAGGAGGAATCGAGGAGATGGACGGCGAGATTGGGGAGGACA 120 consensus_6788#1 ---------------------------TCGAGGAGATGGACGGCGAGATTGGGGAGGACA 33 ********************************* consensus_6788#0 TGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGG 180 consensus_6788#1 TGCTCACGGAGATTCTGGTGAGGCTGCCGTACAAGTCGCTGGCGAGGTTCCAGTGCGTGG 93 ************************************************************ consensus_6788#0 CCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCA 240 consensus_6788#1 CCACGTCGTGGCGGCGCCTCATCTCCGGCGACTACCTCCGCCGGAGGCTGCCGCTCATCA 153 ************************************************************ consensus_6788#0 CCTCCGGTGTGCTGTACCAGGAAGGCCGGGGCGGCGGCGGCGGCGGCGGCGGCGAAGGGA 300 consensus_6788#1 CCTCCGGTGTGCTGTACCAGGA-------------------------------------- 175 ********************** consensus_6788#0 GGAGGAGGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCG 360 consensus_6788#1 ------GGCAGGCGTACACGTACGCGTGCGCGTCGGGGGGTGGTGACCACGGCGGCGGCG 229 ****************************************************** consensus_6788#0 TGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGT 420 consensus_6788#1 TGGCGGAGGCCGACATGGGATTCTTCCCCGGGCACGAGACGTCCACCATCATCGACGGGT 289 ************************************************************ consensus_6788#0 GCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACC 480 consensus_6788#1 GCAACGGCATGCTGCTGTACTACGCATCGCAACCGGCGGCGGCGTTCCACGTCGTGAACC 349 ************************************************************ consensus_6788#0 CGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGC 540 consensus_6788#1 CGACGACGCGGCGGTGGGCGAGGCTGCCGCCGCCGCGCGGGAAGACGCTGCTGTCCGTGC 409 ************************************************************ consensus_6788#0 TGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCC 600 consensus_6788#1 TGGCGTTCGACCCCTCCGCGTCCCCGCACTACAGGGTGGTGTGCTTCACCGGGTGGCTCC 469 ************************************************************ consensus_6788#0 CCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGC 660 consensus_6788#1 CCCGCGGCGCGTCCGTCGAGGTGTTCGACTCCGAGGGCGGCGCGTGGCGCGACCACGAGC 529 ************************************************************ consensus_6788#0 TCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGA 720 consensus_6788#1 TCGACTTCGGGCTCGACACCGACGCCATGTCGGCCACCATGCACTACTTCGACGGCGCGA 589 ************************************************************ consensus_6788#0 TCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCG 780 consensus_6788#1 TCCACGTGCTGGCCTACTCGGGCCACGTCGTCCGCATCGACCTCGGGACCATGGCGTGCG 649 ************************************************************ consensus_6788#0 CGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCC 840 consensus_6788#1 CGGTGACCGCGCTCCCGGCCCCGGTCAGCTGCCGGGCGCGCGCCGGGCACTGCCGTGGCC 709 ************************************************************ consensus_6788#0 GCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGG 900 consensus_6788#1 GCCTCCGGTACGCGTCCAGCGACGGCACGCGCCTCAAGTTCTGGGAGCTCAAGAACGCGG 769 ************************************************************ consensus_6788#0 CCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCGTCGCCGGCGAGG 960 consensus_6788#1 CCACATCGGAGTGGGCACTGAAGCACGAGCTGGGGGTCAATGACCTCGTCGCCGGCGAGG 829 ************************************************************ consensus_6788#0 CGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGA 1020 consensus_6788#1 CGAGCGGAGCTTGCCAGGCCGTCACCTTCTTGTTCATGGCGTTCCACCCGGACAGGGAGA 889 ************************************************************ consensus_6788#0 TGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCG 1080 consensus_6788#1 TGGTGTACCTGTGGACGCCATGGAAGCTCGTGGCGTTCGACATGGAGAAGAGGCGCGTCG 949 ************************************************************ consensus_6788#0 AGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTT 1140 consensus_6788#1 AGGAGGAGTGGGAGGTCGGGCCGGAGAAGGAGAAGGAAGGCGCGCATCTCATTCAGATTT 1009 ************************************************************ consensus_6788#0 GGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTG 1200 consensus_6788#1 GGCTGTTTCCGTTCTCGCGCCATCTGGCCAACAGCTTGGCCTGATTGGTCTATGTGGCTG 1069 ************************************************************ consensus_6788#0 ATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGG 1260 consensus_6788#1 ATAGGCTGGCCGGCGATGTTGACAATGGCATGTGGGCCCAATGCTTGTCTGCAACATTGG 1129 ************************************************************ consensus_6788#0 GCACAATGCCGTTCCGTTCAAGTGTCCAACTGTACAAAGAAGGTACAAGACAATCAAAGC 1320 consensus_6788#1 GCACAATGCCGTTCCGTTCGAGTGTCCAACTGTACAAAGAAGGTACAAGA---------- 1179 ******************* ****************************** consensus_6788#0 CCCAAAGGGAAAAATATATGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1380 consensus_6788#1 ------------------------------------------------------------ consensus_6788#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1409 consensus_6788#1 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||