These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 613 fasta sequence [GACGACGTGCGCCGCCTCTCCGCCTTCTACGACGAGGTGCTCGGCTTCGAGCGGGTCGCCTCCCCGAACTACCCGGCCTTCCAGGTCGCCTGGCTCCGCCTCCCGGGGACGCCCGGCGTCGCGCTCCACATCATCAAGCGCGACCCCGCGGCGGCGCCCGCGGGCGTCGCCCCGGGCGCCTCGGGCGCCCCGCCCGCGCAGCTGCCCAAACACCACCACCTCGCCTTCTCCGTCGCCGACTACGACTGGTTCCTCACCGGGCTGAAGGGCCGGGGCACGGACGTGTTCAACAAGACGCAGCCCGACGGGCGCACGCGCCAGGGCTTCTTC-TTCGACCCCGATGG-GAATGGCCTAGAAGTTACAAGCTCAGGCACAGGCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCGTGC-ATTGGGCGTGGGCTAGCAAACATGGAGACGCA-AACTGCATGTTGTTAGGAACATGTCCATGATATCCCCATGAATAAATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAATATAGCTCTATATGTTACTGGATTGCACTAAAATATATCTCCAAGTTAAAATGTTTTGCTTCTTAAAAAAAAA] [+] EMBL CB684606 [GACGACGTGCGCCGCCTCTCCGCCTTCTACGACGAGGTGCTCGGCTTCGAGCGGGTCGCCTCCCCGAACTACCCGGCCTTCCAGGTCGCCTGGCTCCGCCTCCCGGGGACGCCCGGCGTCGCGCTCCACATCATCAAGCGCGACCCCGCGGCGGCGCCCGCGGGCGTCGCCCCGGGCGCCTCGGGCGCCCCGCCCGCGCAGCTGCCCAAACACCACCACCTCGCCTTCTCCGTCGCCGACTACGACTGGTTCCTCACCGGGCTGAAGGGCCGGGGCACGGACGTGTTCAACAAGACGCAGCCCGACGGGCGCACGCGCCAGGGCTTCTTC TTCGACCCCGATGG GAATGGGCTACAAGTTACAACCTCAGGCACAGGCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCGTGC ATTGGGCGTGGGCTAACAAACATGGAGACGCA AACTGCATGTTGTTAGGAACATGTCCATGATATCCCCATGAATAAATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAATATAGCTCTATATGTTACT ] [+] EMBL CB684825 [ CCGACCGGCGCACGCGCCAGGTCTTCTTC TTCGACCCCGATGG CAATGGCCTAGAAGTTACAAGCTCAGGCACAGGCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCGTGC ATTGGGCGTGGGCTAGCAAACATGGAGACGCA AACTGCATGTTGTTAGGAACATGTCCATGATATCCCCATGAATAAATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAATATAGCTCTATATGTTACTGGATTGCACTAAAATATATCTCCAAGTTAAAATGT ] [+] EMBL BI812695 [ tctTTCGTTCGACCCCGATGGCAAATGGCCTAGAAGTTACAAGCTCAGTCACA GCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCGTGCAATTGGGCGTGGGCTAGCCAACATGGAGACGCAGAACTGCATGTTGTTAGGAACATGTCCATGATATCCCCATGAAT AATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAATATAGCTCTATATGTTACTGGATTGCACT AAATATATCTCCAAGTTAAAATGTTTTGCTTCTTAAAAAAAAA] consensusID : consensus_6798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence [GTGCCCCGCCCGCGCAGCTGCCCAGGGGCCACCACCTCGCTTTTTCGGTCGCCGAATACGACGGGTTCCTCACCGGGTTGAAGGCCCGGGGCACGGAGGTGTTCGAGAAGACTCAGCCCGACGGGCGCACGCGCCAGGTCTTTTTTTTCGACCCCGATGGCAATGGCCTAGAAGTTTCAAGGTCAGGCACAGGCGATATGTAATTGGGGAGCATGATTTACTTGCTGTAACATTCGTCCATTGGTCGTGGGCTAGCAAACACGGAGACCCAAACTGCATGTTTTTATGAACATGT] [-] EMBL CB684607 [GTGCCCCGCCCGCGCAGCTGCCCAGGGGCCACCACCTCGCTTTTTCGGTCGCCGAATACGACGGGTTCCTCACCGGGTTGAAGGCCCGGGGCACGGAGGTGTTCGAGAAGACTCAGCCCGACGGGCGCACGCGCCAGGTCTTTTTTTTCGACCCCGATGGCAATGGCCTAGAAGTTTCAAGGTCAGGCACAGGCGATATGTAATTGGGGAGCATGATTTACTTGCTGTAACATTCGTCCATTGGTCGTGGGCTAGCAAACACGGAGACCCAAACTGCATGTTTTTATGAACATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6798#0 GACGACGTGCGCCGCCTCTCCGCCTTCTACGACGAGGTGCTCGGCTTCGAGCGGGTCGCC 60 consensus_6798#1 ------------------------------------------------------------ consensus_6798#0 TCCCCGAACTACCCGGCCTTCCAGGTCGCCTGGCTCCGCCTCCCGGGGACGCCCGGCGTC 120 consensus_6798#1 ------------------------------------------------------------ consensus_6798#0 GCGCTCCACATCATCAAGCGCGACCCCGCGGCGGCGCCCGCGGGCGTCGCCCCGGGCGCC 180 consensus_6798#1 ------------------------------------------------------------ consensus_6798#0 TCGGGCGCCCCGCCCGCGCAGCTGCCCAAACACCACCACCTCGCCTTCTCCGTCGCCGAC 240 consensus_6798#1 ----GTGCCCCGCCCGCGCAGCTGCCCAGGGGCCACCACCTCGCTTTTTCGGTCGCCGAA 56 * ********************** ************ ** ** ******** consensus_6798#0 TACGACTGGTTCCTCACCGGGCTGAAGGGCCGGGGCACGGACGTGTTCAACAAGACGCAG 300 consensus_6798#1 TACGACGGGTTCCTCACCGGGTTGAAGGCCCGGGGCACGGAGGTGTTCGAGAAGACTCAG 116 ****** ************** ****** ************ ****** * ***** *** consensus_6798#0 CCCGACGGGCGCACGCGCCAGGGCTTCTTCTTCGACCCCGATGGGAATGGCCTAGAAGTT 360 consensus_6798#1 CCCGACGGGCGCACGCGCCAGGTCTTTTTTTTCGACCCCGATGGCAATGGCCTAGAAGTT 176 ********************** *** ** ************** *************** consensus_6798#0 ACAAGCTCAGGCACAGGCGATATGTAATTGCGGAGCATGATTTGCTTGCTGTAACAGTCG 420 consensus_6798#1 TCAAGGTCAGGCACAGGCGATATGTAATTGGGGAGCATGATTTACTTGCTGTAACATTCG 236 **** ************************ ************ ************ *** consensus_6798#0 TGCATTGGGCGTGGGCTAGCAAACATGGAGACGCAAACTGCATGTTGTTAGGAACATGTC 480 consensus_6798#1 TCCATTGGTCGTGGGCTAGCAAACACGGAGACCCAAACTGCATGTTTTTATGAACATGT- 295 * ****** **************** ****** ************* *** ******** consensus_6798#0 CATGATATCCCCATGAATAAATTCGGAGCTTTATACTGAATGAACTGCTCCATGCTGTAA 540 consensus_6798#1 ------------------------------------------------------------ consensus_6798#0 TATAGCTCTATATGTTACTGGATTGCACTAAAATATATCTCCAAGTTAAAATGTTTTGCT 600 consensus_6798#1 ------------------------------------------------------------ consensus_6798#0 TCTTAAAAAAAAA 613 consensus_6798#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||