cluster # 6802

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Oryza sativa
cluster # 6802 cluster # 6802 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6802#0 length = 559 sequences # 1

consensus_6802#1 length = 395 sequences # 3

consensusID : consensus_6802#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [CTGGTAGGCANCGATCGGCGATGGAGAGGTTCAGGACGAAGTNCATGACTTACGGCTACTGCTATGATCGTCTTCGGTATCCTACACNTCCATCAGAGTGCAATGTCGGCCCTGAGGCCGAGCTATTCCTCCCCACGGGCGAGGCCGAGGTCCATCGACCGCCATGGACGAGCTAGGCGCCACCGTCGTGGTCCAGCTGATTCAGCATTCTGATCTTAGCTACTTGTGTTGATGTGGCAGGCTAGCATTCTGATCATCACAATTGGCTCAGTGTGTGCTCACCTCCCTTAATTTTGTGTGGCTTATGTGATGATTTTGCTGAATTTATGTGGGTAGTGTTGTGCATGAATTGGTAGGCAACTTAGATTGATTTGCATTTTGGTGATGGTAGAATTGAATAGAGTTAGGTTATTAATTATATTGATTAAGATTAGCATTTCATTTAGGCTTGTTGATTGTAGTCTGCTGATTTTGTAGAACGTTTGTATGACAATAATGCATGGTGCCCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAA]

[+] EMBL AU029623             [CTGGTAGGCANCGATCGGCGATGGAGAGGTTCAGGACGAAGTNCATGACTTACGGCTACTGCTATGATCGTCTTCGGTATCCTACACNTCCATCAGAGTGCAATGTCGGCCCTGAGGCCGAGCTATTCCTCCCCACGGGCGAGGCCGAGGTCCATCGACCGCCATGGACGAGCTAGGCGCCACCGTCGTGGTCCAGCTGATTCAGCATTCTGATCTTAGCTACTTGTGTTGATGTGGCAGGCTAGCATTCTGATCATCACAATTGGCTCAGTGTGTGCTCACCTCCCTTAATTTTGTGTGGCTTATGTGATGATTTTGCTGAATTTATGTGGGTAGTGTTGTGCATGAATTGGTAGGCAACTTAGATTGATTTGCATTTTGGTGATGGTAGAATTGAATAGAGTTAGGTTATTAATTATATTGATTAAGATTAGCATTTCATTTAGGCTTGTTGATTGTAGTCTGCTGATTTTGTAGAACGTTTGTATGACAATAATGCATGGTGCCCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAA]




>consensus_6802#0
CTGGTAGGCANCGATCGGCGATGGAGAGGTTCAGGACGAAGTNCATGACTTACGGCTACT
GCTATGATCGTCTTCGGTATCCTACACNTCCATCAGAGTGCAATGTCGGCCCTGAGGCCG
AGCTATTCCTCCCCACGGGCGAGGCCGAGGTCCATCGACCGCCATGGACGAGCTAGGCGC
CACCGTCGTGGTCCAGCTGATTCAGCATTCTGATCTTAGCTACTTGTGTTGATGTGGCAG
GCTAGCATTCTGATCATCACAATTGGCTCAGTGTGTGCTCACCTCCCTTAATTTTGTGTG
GCTTATGTGATGATTTTGCTGAATTTATGTGGGTAGTGTTGTGCATGAATTGGTAGGCAA
CTTAGATTGATTTGCATTTTGGTGATGGTAGAATTGAATAGAGTTAGGTTATTAATTATA
TTGATTAAGATTAGCATTTCATTTAGGCTTGTTGATTGTAGTCTGCTGATTTTGTAGAAC
GTTTGTATGACAATAATGCATGGTGCCCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAGAAAAAAAAAAA

consensusID : consensus_6802#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 395
fasta sequence

                              [CTTATGTGATGATTTTGCTGAATTTATGTGGGTAGTGTTGTGCCATGAANTGGTNGGCAACTTAGATTGATTTGCATTTTGGTGATGGTAGANTTGAATAGAGTTAGGTTANTAATTATATTGATTAAGATTAGCATTTNATTTAGGCTTGTTGATTGTAGTCTGCTGATTTTGTAGAACGTTTGTATGACAATAATGCATGGTGCCCATGATATGAAATGCATATATATGTAGTAGNAGTAAAAAAAACCTTGGAACACTGATTGGATTATTCATTTCTAGCATCCACTAAACGCGTGCAGCTAGGCTATGCTGCAGNCCNAGCTAATATCATGATTTTTTTACTAAAGTTCATTCTCTACCAATATGAGTAACTTTTTATTTGATTAAAAAAA]

[+] EMBL AU078028             [CTTATGTGATGATTTTGCTGAATTTATGTGGGTAGTGTTGTGCCATGAANTGGTNGGCAACTTAGATTGATTTGCATTTTGGTGATGGTAGANTTGAATAGAGTTAGGTTANTAATTATATTGATTAAGATTAGCATTTNATTTAGGCTTGTTGATTGTAGTCTGCTGATTTTGTAGAACGTTTGTATGACAATNATGCATGGTGCCCATGATATGAAATGNATATATATGTAGTAGNAGTAAAAAAAA                                                                                                                                                  ]
[+] EMBL AU029726             [  TATGTGATGATTTTGCTGAATTTATGTGGGTAGTGTTGTG CATGAATTGGTAGGCAACTTAGATTGATTTGCATTTTGGTGATGGTNGAATTGAATAGAGTTAGGTTATNAATTATATTGATTAAGATTAGCATNTCATTTAGGCTTGTTGATTGTAGTCTGCTGATTTTGTAGAACGTTTGTATGACAATAATGCATGGTGCCCATGATATGAAATGCATATATATGTAGTAGCAGTAACTGTGTCCTTGGAACACTGATTGGATTATTCATTTCTAGCATCCACTAAACGCGTGCAGCTAGGCTATGCTGCAGNCCNAGCTAATATCATGATTTTTTTACTAAAGTTCATTCTCTACCAATATGAGTAACTTTTTATTTGATTAAAAAAA]
[+] EMBL AU031071             [                                                                                                                                                                               AGAACGTTTGTATGACAATAATGCATGGTGCCCATGATATGAAATGCATATATATGTAGTAaaaan                                                                                                                                                          ]




>consensus_6802#1
CTTATGTGATGATTTTGCTGAATTTATGTGGGTAGTGTTGTGCCATGAANTGGTNGGCAA
CTTAGATTGATTTGCATTTTGGTGATGGTAGANTTGAATAGAGTTAGGTTANTAATTATA
TTGATTAAGATTAGCATTTNATTTAGGCTTGTTGATTGTAGTCTGCTGATTTTGTAGAAC
GTTTGTATGACAATAATGCATGGTGCCCATGATATGAAATGCATATATATGTAGTAGNAG
TAAAAAAAACCTTGGAACACTGATTGGATTATTCATTTCTAGCATCCACTAAACGCGTGC
AGCTAGGCTATGCTGCAGNCCNAGCTAATATCATGATTTTTTTACTAAAGTTCATTCTCT
ACCAATATGAGTAACTTTTTATTTGATTAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6802#0      CTGGTAGGCANCGATCGGCGATGGAGAGGTTCAGGACGAAGTNCATGACTTACGGCTACT 60
consensus_6802#1      ------------------------------------------------------------
                                                                                  

consensus_6802#0      GCTATGATCGTCTTCGGTATCCTACACNTCCATCAGAGTGCAATGTCGGCCCTGAGGCCG 120
consensus_6802#1      ------------------------------------------------------------
                                                                                  

consensus_6802#0      AGCTATTCCTCCCCACGGGCGAGGCCGAGGTCCATCGACCGCCATGGACGAGCTAGGCGC 180
consensus_6802#1      ------------------------------------------------------------
                                                                                  

consensus_6802#0      CACCGTCGTGGTCCAGCTGATTCAGCATTCTGATCTTAGCTACTTGTGTTGATGTGGCAG 240
consensus_6802#1      ------------------------------------------------------------
                                                                                  

consensus_6802#0      GCTAGCATTCTGATCATCACAATTGGCTCAGTGTGTGCTCACCTCCCTTAATTTTGTGTG 300
consensus_6802#1      ------------------------------------------------------------
                                                                                  

consensus_6802#0      GCTTATGTGATGATTTTGCTGAATTTATGTGGGTAGTGTTGTGC-ATGAATTGGTAGGCA 359
consensus_6802#1      -CTTATGTGATGATTTTGCTGAATTTATGTGGGTAGTGTTGTGCCATGAANTGGTNGGCA 59
                       ******************************************* ***** **** ****

consensus_6802#0      ACTTAGATTGATTTGCATTTTGGTGATGGTAGAATTGAATAGAGTTAGGTTATTAATTAT 419
consensus_6802#1      ACTTAGATTGATTTGCATTTTGGTGATGGTAGANTTGAATAGAGTTAGGTTANTAATTAT 119
                      ********************************* ****************** *******

consensus_6802#0      ATTGATTAAGATTAGCATTTCATTTAGGCTTGTTGATTGTAGTCTGCTGATTTTGTAGAA 479
consensus_6802#1      ATTGATTAAGATTAGCATTTNATTTAGGCTTGTTGATTGTAGTCTGCTGATTTTGTAGAA 179
                      ******************** ***************************************

consensus_6802#0      CGTTTGTATGACAATAATGCATGGTGCCCATGAAAAAAAAAAAAAAAAAAAAAAAAAAAA 539
consensus_6802#1      CGTTTGTATGACAATAATGCATGGTGCCCATGATATGAAATGCATATATATGTAGTAGNA 239
                      ********************************* *  ***   * * * *   *  *  *

consensus_6802#0      AAAAAAAAGAAAAAAAAAAA---------------------------------------- 559
consensus_6802#1      GTAAAAAAAACCTTGGAACACTGATTGGATTATTCATTTCTAGCATCCACTAAACGCGTG 299
                        ****** *      ** *                                        

consensus_6802#0      ------------------------------------------------------------
consensus_6802#1      CAGCTAGGCTATGCTGCAGNCCNAGCTAATATCATGATTTTTTTACTAAAGTTCATTCTC 359
                                                                                  

consensus_6802#0      ------------------------------------
consensus_6802#1      TACCAATATGAGTAACTTTTTATTTGATTAAAAAAA 395