|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6803#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1349 fasta sequence
[CACCTTTTGGGATTCTCAGAGGAAGCGACGGGTGATGGCTTCAAGCTGGCGGCGACATCTCATCCTGTACCCTAGATCCACACGAGAGGATGGACTGGCCTCTCGGCGGCTCGATCTGCGGGGCTCCCATGGCGATAGAGGGCCTCTGGGCCTGCATCCGCCGCTGCTTTTCTACCATTGGTTGCTGTCCATGCTAGAGCAGCAAGATGGGATGGATCTGATGGGGAGGAATGAGTTTGTTTCTTTCGATCTGTGTGTGTTCTTCACGGATGGATTATTCCATTCGTTCGCTTCCAATTTGTTATTTCTACTCACTAGGGGAAAAACAGGTTTGCATCTTCTTACATTTTGTTGGTTGCTCTTGTTGTAGATTGCGGGCATCCAAAGTCAGCCATGTGGAGAGCATCGTCGGCGACCATGATGTGAGGAGGCAGCAAGGGTACCGGTTTTAGGTGCCCGTAGTGGATACCGTCACCCCGCATCTGGTGGAGGAGGCGGCTGGAGGCAGGATCCGGTTTCTGGCAACTTGATCTAGTTTTGTGGTCATGTCGTTGTGTTGAGGGCGGCAGCTCGATCTGCCCTCCGGAGCGAGGACGGCGTTGCTGCGCAAAGGTGACGTCCTGTTCCCGGTGCCGGTGGCAGTGAGTTAGGGAGGGCAGGATGATGAGGCCACGAGGCGAAGGTGCAGCAAATGGAGGGCGTATCTAGGTTCTGGTCCGCAAGGTCAGTTCACAGTATCACCGGGCGGCGTTGGTCTCTGGGTAGGCGAGTGACGAGCTGCTCTGGAATTCCTAGCGAGAGGGGATGGTGCTCCTCTCCGCCATCAGTGTGGATCTCACATCGTCAACGAGCATGTCGTCATCACCCCAACATGACCACCTCCTCCAAGAGTCTACCATGGCTGCACGCAAGGAGGCCGCCCACGGCTTCACCGCCGCTGCCGCCTGGCCGGATGCCAGAATCGGCGGGCGTCACTATCGAAGGCAGGCTTCAACTCCCCCGGCGAGGCTTCTCCATCGTTGTGTGATTGTCGGCCTTGCTCTCCTATGTTCATGCTTTTTGCTTGTCGGGTTTTAAGCACTTCTTTTTTGTGCTCACCCTTTCAACACCATGTCAAGACCAGCGGCGACCTCGCCGAGAGAGCAGCGGGCCGCCGTTCCTCCTATGTCCAAAGAACGTTTTCCTGTATATATATTTTTTTGGGTTCATTTGATGCGTAAATTTTATATCCGTAGAGCGATTCCATTATCCTCTCTCCCAGTATGTATTTCCTGTCTACTTTCTTGCGTTCGTTTGATGTGTACAATACGATTGATTTGCATGATTAAATAAACTTGATTGTCTGTGAT]
[+] EMBL AK070822 [CACCTTTTGGGATTCTCAGAGGAAGCGACGGGTGATGGCTTCAAGCTGGCGGCGACATCTCATCCTGTACCCTAGATCCACACGAGAGGATGGACTGGCCTCTCGGCGGCTCGATCTGCGGGGCTCCCATGGCGATAGAGGGCCTCTGGGCCTGCATCCGCCGCTGCTTTTCTACCATTGGTTGCTGTCCATGCTAGAGCAGCAAGATGGGATGGATCTGATGGGGAGGAATGAGTTTGTTTCTTTCGATCTGTGTGTGTTCTTCACGGATGGATTATTCCATTCGTTCGCTTCCAATTTGTTATTTCTACTCACTAGGGGAAAAACAGGTTTGCATCTTCTTACATTTTGTTGGTTGCTCTTGTTGTAGATTGCGGGCATCCAAAGTCAGCCATGTGGAGAGCATCGTCGGCGACCATGATGTGAGGAGGCAGCAAGGGTACCGGTTTTAGGTGCCCGTAGTGGATACCGTCACCCCGCATCTGGTGGAGGAGGCGGCTGGAGGCAGGATCCGGTTTCTGGCAACTTGATCTAGTTTTGTGGTCATGTCGTTGTGTTGAGGGCGGCAGCTCGATCTGCCCTCCGGAGCGAGGACGGCGTTGCTGCGCAAAGGTGACGTCCTGTTCCCGGTGCCGGTGGCAGTGAGTTAGGGAGGGCAGGATGATGAGGCCACGAGGCGAAGGTGCAGCAAATGGAGGGCGTATCTAGGTTCTGGTCCGCAAGGTCAGTTCACAGTATCACCGGGCGGCGTTGGTCTCTGGGTAGGCGAGTGACGAGCTGCTCTGGAATTCCTAGCGAGAGGGGATGGTGCTCCTCTCCGCCATCAGTGTGGATCTCACATCGTCAACGAGCATGTCGTCATCACCCCAACATGACCACCTCCTCCAAGAGTCTACCATGGCTGCACGCAAGGAGGCCGCCCACGGCTTCACCGCCGCTGCCGCCTGGCCGGATGCCAGAATCGGCGGGCGTCACTATCGAAGGCAGGCTTCAACTCCCCCGGCGAGGCTTCTCCATCGTTGTGTGATTGTCGGCCTTGCTCTCCTATGTTCATGCTTTTTGCTTGTCGGGTTTTAAGCACTTCTTTTTTGTGCTCACCCTTTCAACACCATGTCAAGACCAGCGGCGACCTCGCCGAGAGAGCAGCGGGCCGCCGTTCCTCCTATGTCCAAAGAACGTTTTCCTGTATATATATTTTTTTGGGTTCATTTGATGCGTAAATTTTATATCCGTAGAGCGATTCCATTATCCTCTCTCCCAGTATGTATTTCCTGTCTACTTTCTTGCGTTCGTTTGATGTGTACAATACGATTGATTTGCATGATTAAATAAACTTGATTGTCTGTGAT]
consensusID : consensus_6803#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1224 fasta sequence
[CTCTCAGATCCATCGATGGCGGCGGACTCCGACTGGCCACGGCGCCTCGCTCCGATGGCCAAAGCGACGGGCTAGGAAGAGGTGGGCGGTAGATCATGTCGTCGTTGCGTCGTCATCGTTGTTCTTCGTCGACATCCTCGTCACCCTCATCGAGGTCCACTGCCGTCGCCGGGCCTCCTACCGCCCGGCTTCCTCCTCCGGCCTCGCTAGGGGATCTCGTCACTGGTGCCCTCCCCATCCTCAGGCTCGTCGTCATGGGACTGCGCCGCCGCGGTCCCCGTCGCGGCACCCCCGACTCCCTTCGGCTCCTAGGCCGCCGCCACCTCCACTGCTACCTCGGCTTCCTCCGACCAACACTCACCTACCAGCGGCTCGATCTGCGGGGCTCCCATGGCGATAGAGGGCCTTTGGGCCTGCATCCGCCGCTGTTTTTCCACCATTGGTTGCCCGCCATGCTGGAGCAGCAAGATGGGATGGATCTGACGGGGAGGAAGGATTTATTTCTTTGATCCGCATCCAAAGTCAGCCATGTGGAGAGCGTCGTCGGTGACCATGATGCGAGGCGGCGGCGTGGGTACCGGTTTCAGGTGCCCGTAGTGGAGTCCATCACCCCGCATCTGGCGGAGGATCTACCATGGTGGTGAAGCCATGGGCGCATGCCCCGTCATCACCCCAGCATGACCACTTCCTCCAAGAATCTACCATGGCTGCACGCAAGGAGGCTGCCCACGGCTTCACCTCCGCTGCCGCCTGGCCGGATGCCAGAATCGGCGGGCGTCGCTGTCGAAGGCAGGCTTCAATTCTCCCGGCGAGGCTTCTCCATCATTTTGTGATTGTCAGCCTTGCTCTCCTATGTTCCTGCTTTCTACTTGTCGGGCTTGTAAGCACTTCATTTTTGTGCTCGCCCTTTCAGCACCATCTCAAGACCGGCGGCGACCTCGCCGAGAGAGCAGTAGGCCGCTGTTCCTCCAATGTTCAAAGAATGTTTTCCTGCATATATATATTTTGGGTTCGTTTGATGTGTAAATTTTATATCCGTACAACGATTCATTATCCTCTCTCCCAGTTTGTATTTCTTGTCTACTTTCTTGCGTTCTTTTGATGTGTACAATATGATTGATTTGCATGATTGAATAATCTTGATTGTCTNNNATGTATGCNCCGTNAATNGATNTAAAAANANAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAAAAANNNN]
[+] EMBL AK069277 [CTCTCAGATCCATCGATGGCGGCGGACTCCGACTGGCCACGGCGCCTCGCTCCGATGGCCAAAGCGACGGGCTAGGAAGAGGTGGGCGGTAGATCATGTCGTCGTTGCGTCGTCATCGTTGTTCTTCGTCGACATCCTCGTCACCCTCATCGAGGTCCACTGCCGTCGCCGGGCCTCCTACCGCCCGGCTTCCTCCTCCGGCCTCGCTAGGGGATCTCGTCACTGGTGCCCTCCCCATCCTCAGGCTCGTCGTCATGGGACTGCGCCGCCGCGGTCCCCGTCGCGGCACCCCCGACTCCCTTCGGCTCCTAGGCCGCCGCCACCTCCACTGCTACCTCGGCTTCCTCCGACCAACACTCACCTACCAGCGGCTCGATCTGCGGGGCTCCCATGGCGATAGAGGGCCTTTGGGCCTGCATCCGCCGCTGTTTTTCCACCATTGGTTGCCCGCCATGCTGGAGCAGCAAGATGGGATGGATCTGACGGGGAGGAAGGATTTATTTCTTTGATCCGCATCCAAAGTCAGCCATGTGGAGAGCGTCGTCGGTGACCATGATGCGAGGCGGCGGCGTGGGTACCGGTTTCAGGTGCCCGTAGTGGAGTCCATCACCCCGCATCTGGCGGAGGATCTACCATGGTGGTGAAGCCATGGGCGCATGCCCCGTCATCACCCCAGCATGACCACTTCCTCCAAGAATCTACCATGGCTGCACGCAAGGAGGCTGCCCACGGCTTCACCTCCGCTGCCGCCTGGCCGGATGCCAGAATCGGCGGGCGTCGCTGTCGAAGGCAGGCTTCAATTCTCCCGGCGAGGCTTCTCCATCATTTTGTGATTGTCAGCCTTGCTCTCCTATGTTCCTGCTTTCTACTTGTCGGGCTTGTAAGCACTTCATTTTTGTGCTCGCCCTTTCAGCACCATCTCAAGACCGGCGGCGACCTCGCCGAGAGAGCAGTAGGCCGCTGTTCCTCCAATGTTCAAAGAATGTTTTCCTGCATATATATATTTTGGGTTCGTTTGATGTGTAAATTTTATATCCGTACAACGATTCATTATCCTCTCTCCCAGTTTGTATTTCTTGTCTACTTTCTTGCGTTCTTTTGATGTGTACAATATGATTGATT ]
[+] EMBL C91717 [ ATGGCGGCGGACTCCGACTGGCCACGGCGCCTCGCTCCGATGGCCAAAGCGACGGGCTAGGAAGAGGTGGGCGGTAGATCATGTCGTCGTTGCGTCGTCATCGTTGTTCTTCGTCGACATCCTCGTCACCCTCATCGAGGTCCACTGCCGTCGCCGGGCCTCCTACCGNCCGGCTTCCTCCTCCGGCCTCGCTAGGGGATCTCGTCACTGGTGCCCTCCCCATCCTCAGGCTCGTCGTCATGGGACTGCGNCGCCGGGGTCCCCGTCGCGGCAACCCCGACTTCCTTCGGCTNCTAGGCCGCCG CAACTTCACTTNTACCTCGGCTTTCTTCGACCAACANTAACt ]
[+] EMBL AU029730 [ TGTTCCNCCAATGTTCAAAGAATGTTTTCCTGCATATATATATTTTGGGTTCGTTTGATGTGTAAATTTTATANCCGTACAACGATTCATTATCCTCTCTCCCNGTTTGTATTTCTTGTCTACTTTCTTGNGTTCTTTTGATGTGTACAATATGATTGATTTGCATGATTGAATAATCTTGATTGTCTNNNATGTATGCNCCGTNAATNGATNTAAAAANANAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAAAAANNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6803#0 CACCTTTTGGGATTCTCAGAGGAAGCGACGGGTGATGGCTTCAAGCTGGCGGCGACATCT 60
consensus_6803#1 ------------------------------------------------------------
consensus_6803#0 CATCCTGTACCCTAGATCCACACGAGAGGATGGACTGGCCTCTCGGCGGCTCGATCTGCG 120
consensus_6803#1 ------------------------------------------------------------
consensus_6803#0 GGGCTCCCATGGCGATAGAGGGCCTCTGGGCCTGCATCCGCCGCTGCTTTTCTACCATTG 180
consensus_6803#1 ---CTCTCAGATCCATCGATGGCGGC-GGACTCCGACTGGCCACGGCGCCTC-------- 48
*** ** * ** ** *** * ** * * *** * ** **
consensus_6803#0 GTTGCTGTCCATGCTAGAGCAGCAAGATGGGATGGATCTGATGGGGAGGAATGAGTTTGT 240
consensus_6803#1 ---GCTCCGATGGCCAAAGCGACGGGCTAGGAAGAGGTGGGCGGTAGATCATGTCGTCGT 105
*** ** * *** * * * *** * * ** *** * **
consensus_6803#0 TTCTTTCGATCTGTGTGTGTTCTTCACGGATGGATTATTCCATTCGTTCGCTTCCAATTT 300
consensus_6803#1 TGCGTC--GTCATCGT-TGTTCTTCGTCGAC-----ATCCTCGTCACCCTCATCGAGGT- 156
* * * ** ** ******** ** ** * ** * * ** * *
consensus_6803#0 GTTATTTCTACTCACTAGGGGAAAAACAGGTTTGCATCTTCTTACA-TTTTGTTGGTTGC 359
consensus_6803#1 -CCACTGCCG-TCGCCGGGCCTCCTACCGCCCGGCTTCCTCCTCCGGCCTCGCTAGGGGA 214
* * * ** * ** ** * ** ** ** * * * * * * *
consensus_6803#0 TCTTGTTGTAGATTGCGGGCATCCAAAGTCAGCCATGTGGAGAGCATCGTCGGCGACCAT 419
consensus_6803#1 TCTCGTCACTGGTGCCC--TCCCCATCCTCAGGCTCGTCGTCATGGGACTGCGCCGCCGC 272
*** ** * * * *** **** * ** * * * ** **
consensus_6803#0 GATGTGAGGAGGCAGCAAGGGTACCGGTTTTAGGTGCCCGTAGTGGATACCGTCACCCCG 479
consensus_6803#1 GGTCCCCGTCG-CGGCACCCCCGACTCCCTTCGGCTCCTA----GGCCGCCGCCACCTC- 326
* * * * * *** * ** ** ** ** *** **** *
consensus_6803#0 CATCTGGTGGAGGAGGCGGCTGGAGGCAGGATCCGGTTTCTGGCAACTTGATCTAGTTTT 539
consensus_6803#1 CA-CTGCTACCTCGGCTTCCTCCGACCAACACTCACCTACCAGCGGCTCGATCT------ 379
** *** * * ** ** * * * * ** ** *****
consensus_6803#0 GTGGTCATGTCGTTGTGTTGAGGGCGGCAGCTCGATCTGCCCTCCGGAGCGAGGACGGCG 599
consensus_6803#1 GCGGGGCTCCCATGGCGATAGAGG--GCCTTTGGGCCTGCATCC---------GCCGCTG 428
* ** * * * * * * ** ** * * **** * * ** *
consensus_6803#0 TTGCTGCGCAAAGGTGACGTCCTGTTCCCGGTGCCGGTGGCAGTGAGTTAGGGAGGGCAG 659
consensus_6803#1 TTTTTCCACCATTGG------TTGCCCGCCATGCTGG-AGCAGCAAGATGGGATGGATCT 481
** * * * * * ** * * *** ** **** ** * ** **
consensus_6803#0 GATGATGAGGCCACGAGGCGAAGGTGCAGCAAATGGAGGGCGTATCTAGGTTCTGGTCCG 719
consensus_6803#1 GACGGGGAGG---------AAGGATTTATTTCTTTGATC-CGCATCCAAAGTCAGCCATG 531
** * **** * * * * * ** ** *** * ** * *
consensus_6803#0 CAAGGTCAGTTCACAGT-ATCACCGGGCGGCGTTGGTCTCTGGGTAGGCGAGTGACGAGC 778
consensus_6803#1 TGGAGAGCGTCGTCGGTGACCATGATGCGAGGCGGCGGCGTGGGTACCGGTTTCAGGTGC 591
* ** * ** * ** *** * * ****** * * * * **
consensus_6803#0 T-GCTCTGGAATTCCTAGCGAGAGGGGATGGTGCTCCTCTCCGCCATCAGTGTGGATCTC 837
consensus_6803#1 CCGTAGTGGAGTCCATCACCCC-GCATCTGGCGGAGGA-TCTACCATGGTGGTGAAGC-- 647
* **** * * * * * *** * ** **** *** * *
consensus_6803#0 ACATCGTCAACGAGCATGTCGTCATCACCCCAACATGACCACCTCCTCCAAGAGTCTACC 897
consensus_6803#1 ----CATGGGCGCATGCCCCGTCATCACCCCAGCATGACCACTTCCTCCAAGAATCTACC 703
* * ** ************* ********* ********** ******
consensus_6803#0 ATGGCTGCACGCAAGGAGGCCGCCCACGGCTTCACCGCCGCTGCCGCCTGGCCGGATGCC 957
consensus_6803#1 ATGGCTGCACGCAAGGAGGCTGCCCACGGCTTCACCTCCGCTGCCGCCTGGCCGGATGCC 763
******************** *************** ***********************
consensus_6803#0 AGAATCGGCGGGCGTCACTATCGAAGGCAGGCTTCAACTCCCCCGGCGAGGCTTCTCCAT 1017
consensus_6803#1 AGAATCGGCGGGCGTCGCTGTCGAAGGCAGGCTTCAATTCTCCCGGCGAGGCTTCTCCAT 823
**************** ** ***************** ** *******************
consensus_6803#0 CGTTGTGTGATTGTCGGCCTTGCTCTCCTATGTTCATGCTTTTTGCTTGTCGGGTTT-TA 1076
consensus_6803#1 CATTTTGTGATTGTCAGCCTTGCTCTCCTATGTTCCTGCTTTCTACTTGTCGGGCTTGTA 883
* ** ********** ******************* ****** * ********* ** **
consensus_6803#0 AGCACTTCTTTTTTGTGCTCACCCTTTCAACACCATGTCAAGACCAGCGGCGACCTCGCC 1136
consensus_6803#1 AGCACTTCATTTTTGTGCTCGCCCTTTCAGCACCATCTCAAGACCGGCGGCGACCTCGCC 943
******** *********** ******** ****** ******** **************
consensus_6803#0 GAGAGAGCAGCGGGCCGCCGTTCCTCCTATGTCCAAAGAACGTTTTCCTGTATATATATT 1196
consensus_6803#1 GAGAGAGCAGTAGGCCGCTGTTCCTCCAATGTTCAAAGAATGTTTTCCTGCATATATATA 1003
********** ****** ******** **** ******* ********* ********
consensus_6803#0 TTTTTGGGTTCATTTGATGCGTAAATTTTATATCCGTAGAGCGATTCCATTATCCTCTCT 1256
consensus_6803#1 TTTT-GGGTTCGTTTGATGTGTAAATTTTATATCCGTACAACGATTC-ATTATCCTCTCT 1061
**** ****** ******* ****************** * ****** ************
consensus_6803#0 CCCAGTATGTATTTCCTGTCTACTTTCTTGCGTTCGTTTGATGTGTACAATACGATTGAT 1316
consensus_6803#1 CCCAGTTTGTATTTCTTGTCTACTTTCTTGCGTTCTTTTGATGTGTACAATATGATTGAT 1121
****** ******** ******************* **************** *******
consensus_6803#0 TTGCATGATTAAATAAACTTGATTGTCTGTGAT--------------------------- 1349
consensus_6803#1 TTGCATGATTGAATAATCTTGATTGTCTNNNATGTATGCNCCGTNAATNGATNTAAAAAN 1181
********** ***** *********** **
consensus_6803#0 -------------------------------------------
consensus_6803#1 ANAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAAAAAANNNN 1224
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||