cluster # 6806

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Oryza sativa
cluster # 6806 cluster # 6806 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6806#0 length = 1866 sequences # 1
consensus_6806#1 length = 1589 sequences # 1

consensus_6806#2 length = 787 sequences # 1
consensus_6806#3 length = 513 sequences # 1

consensusID : consensus_6806#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1866
fasta sequence

                              [CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAATCAATTTTGGCCCTCTTGAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGTGTGCGCGGTTTTGTCGCGTCGTCGTACGTCGAGAATCCGTGAGCCAGACAGACAAGCCAGTGGTTTGGTGATTCTTGCGGCGGCGCGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGGCAGCTGATGCACCACGACGACATCTACTTGCCGCGCTCGGTGGGGTGCGGGCGGCCGTTCGAGCTGGACGACGCGTTCCTGGGCGCGTGCTTCGGCGCCCAGCTCCAGTGCGACGGTGGCGTCGGCGGCGGCGACGGCGGCGGGTGTCTGCAGGGTACCTCGGGATTTGGCGCCGTGGCTGGAGACCCGTTGGGGTTGCTGTGCTCGGGGGACGTGTTTGCGTCTGTCGCCGAGGGCGCCGGCGGCGCGCACGACGACGGCCTCCTCGACGCGGCGCTCGCCTTCTCCCGGAATCAGCTCGGGGGCGCCGCCTGCGACGGGAGCGACGGCGGGGCCGTGTCGAACGGCGCCATGCTGTCCAGCTACAGCGGCACCACCGGCGGCAACATCTCCTCCGGCGAGTCGAATAACTACAGCGGCGGCGGCGGTGGCTACGACGCCGATGTGGTGTCGCCGACGTCCACCATGTCCGCAGCCACACAGTCGCTCCACCCCAAGCGAAAGCTATACGACGACCACCACCACCCCGCCGGCATAGCAGCCGCAGCCGCAGCGCCACCGCTGGCGCCGTGCCCACGCCCCACCACCGGCGCCGTCGCCGCGAAGCGGAGGGCTTCCACGTCAGCAACAAGCATCACCTTCGGCCACCAGCCGCACCACCACCACGCGGGCGCCACCACCGCCGGGTACGAGCCTGACATGGAAGCCATGGCGCAGGTGAAGGAGATGATCTACCGGGCGGCGGCCATGCGCCCCGTCCACCTCGGCACGGAGGCCGCCGCCGACAAGCCCCGCCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGGCGCGTCTCCGGCGGGAGCGCGTCAGCGACCGCCTCCGCGTCCTGCAGAAGCTGGTCCCCGGCGGCAACAAGATGGACACGGCGTCCATGCTCGACGAGGCGGCCAGCTACCTCAAGTTCCTCAAGTCCCAGGTCCAAAAGCTGGAAACCCTAGGCACCACCACCACCACGTCCAAGTTACCGCAGCAGTATTACAGCGGCAACATCAACAGCAGCAATAATCACCATGGATTCCTCGGATTCGCAGCAAATAACAACACCATTTCAGCTGGCTACGCAAATTCTAATGCTGGAAATGCAACGAAACTGTTGTAGCACTGTGGCTAGCACAAGTACTTGATACGCACAACGTACGCGTGGTCTCGTCGTCTATATACATGTAGTAACATGCTGCTGTTTTCTACTGTTTCTAGGCTTGGTGGTGATCAGTGTACGTACACACGGCACATAATTGGAGTCTTAATTAGTGGTGGAGTGCATGCTGATTTAGTTCGTGGTCATGTTCTTGTGCAAGATTTAGATTTATAATCTTCCGCTGGCGGATCAGCTGCATGGAGTGAGAAGTTACATCAAATTAAAGGGGCCATCTGATGGTTCGTTCAAAAAAAAAAAACGGGTGCCATCTGATAGAGGAAAACATGTGGTTCAATAATGGAAAAGAGTGGCCTGGACGAGCAAT]

[+] EMBL AK100208             [CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAATCAATTTTGGCCCTCTTGAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGTGTGCGCGGTTTTGTCGCGTCGTCGTACGTCGAGAATCCGTGAGCCAGACAGACAAGCCAGTGGTTTGGTGATTCTTGCGGCGGCGCGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGGCAGCTGATGCACCACGACGACATCTACTTGCCGCGCTCGGTGGGGTGCGGGCGGCCGTTCGAGCTGGACGACGCGTTCCTGGGCGCGTGCTTCGGCGCCCAGCTCCAGTGCGACGGTGGCGTCGGCGGCGGCGACGGCGGCGGGTGTCTGCAGGGTACCTCGGGATTTGGCGCCGTGGCTGGAGACCCGTTGGGGTTGCTGTGCTCGGGGGACGTGTTTGCGTCTGTCGCCGAGGGCGCCGGCGGCGCGCACGACGACGGCCTCCTCGACGCGGCGCTCGCCTTCTCCCGGAATCAGCTCGGGGGCGCCGCCTGCGACGGGAGCGACGGCGGGGCCGTGTCGAACGGCGCCATGCTGTCCAGCTACAGCGGCACCACCGGCGGCAACATCTCCTCCGGCGAGTCGAATAACTACAGCGGCGGCGGCGGTGGCTACGACGCCGATGTGGTGTCGCCGACGTCCACCATGTCCGCAGCCACACAGTCGCTCCACCCCAAGCGAAAGCTATACGACGACCACCACCACCCCGCCGGCATAGCAGCCGCAGCCGCAGCGCCACCGCTGGCGCCGTGCCCACGCCCCACCACCGGCGCCGTCGCCGCGAAGCGGAGGGCTTCCACGTCAGCAACAAGCATCACCTTCGGCCACCAGCCGCACCACCACCACGCGGGCGCCACCACCGCCGGGTACGAGCCTGACATGGAAGCCATGGCGCAGGTGAAGGAGATGATCTACCGGGCGGCGGCCATGCGCCCCGTCCACCTCGGCACGGAGGCCGCCGCCGACAAGCCCCGCCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGGCGCGTCTCCGGCGGGAGCGCGTCAGCGACCGCCTCCGCGTCCTGCAGAAGCTGGTCCCCGGCGGCAACAAGATGGACACGGCGTCCATGCTCGACGAGGCGGCCAGCTACCTCAAGTTCCTCAAGTCCCAGGTCCAAAAGCTGGAAACCCTAGGCACCACCACCACCACGTCCAAGTTACCGCAGCAGTATTACAGCGGCAACATCAACAGCAGCAATAATCACCATGGATTCCTCGGATTCGCAGCAAATAACAACACCATTTCAGCTGGCTACGCAAATTCTAATGCTGGAAATGCAACGAAACTGTTGTAGCACTGTGGCTAGCACAAGTACTTGATACGCACAACGTACGCGTGGTCTCGTCGTCTATATACATGTAGTAACATGCTGCTGTTTTCTACTGTTTCTAGGCTTGGTGGTGATCAGTGTACGTACACACGGCACATAATTGGAGTCTTAATTAGTGGTGGAGTGCATGCTGATTTAGTTCGTGGTCATGTTCTTGTGCAAGATTTAGATTTATAATCTTCCGCTGGCGGATCAGCTGCATGGAGTGAGAAGTTACATCAAATTAAAGGGGCCATCTGATGGTTCGTTCAAAAAAAAAAAACGGGTGCCATCTGATAGAGGAAAACATGTGGTTCAATAATGGAAAAGAGTGGCCTGGACGAGCAAT]




>consensus_6806#0
CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAATCAATTTTGGCCCTCTTGAGGCTCCGG
CCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCT
TGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTTGTTT
CACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGTGTGCGCGGTT
TTGTCGCGTCGTCGTACGTCGAGAATCCGTGAGCCAGACAGACAAGCCAGTGGTTTGGTG
ATTCTTGCGGCGGCGCGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGGCAGCTGATGC
ACCACGACGACATCTACTTGCCGCGCTCGGTGGGGTGCGGGCGGCCGTTCGAGCTGGACG
ACGCGTTCCTGGGCGCGTGCTTCGGCGCCCAGCTCCAGTGCGACGGTGGCGTCGGCGGCG
GCGACGGCGGCGGGTGTCTGCAGGGTACCTCGGGATTTGGCGCCGTGGCTGGAGACCCGT
TGGGGTTGCTGTGCTCGGGGGACGTGTTTGCGTCTGTCGCCGAGGGCGCCGGCGGCGCGC
ACGACGACGGCCTCCTCGACGCGGCGCTCGCCTTCTCCCGGAATCAGCTCGGGGGCGCCG
CCTGCGACGGGAGCGACGGCGGGGCCGTGTCGAACGGCGCCATGCTGTCCAGCTACAGCG
GCACCACCGGCGGCAACATCTCCTCCGGCGAGTCGAATAACTACAGCGGCGGCGGCGGTG
GCTACGACGCCGATGTGGTGTCGCCGACGTCCACCATGTCCGCAGCCACACAGTCGCTCC
ACCCCAAGCGAAAGCTATACGACGACCACCACCACCCCGCCGGCATAGCAGCCGCAGCCG
CAGCGCCACCGCTGGCGCCGTGCCCACGCCCCACCACCGGCGCCGTCGCCGCGAAGCGGA
GGGCTTCCACGTCAGCAACAAGCATCACCTTCGGCCACCAGCCGCACCACCACCACGCGG
GCGCCACCACCGCCGGGTACGAGCCTGACATGGAAGCCATGGCGCAGGTGAAGGAGATGA
TCTACCGGGCGGCGGCCATGCGCCCCGTCCACCTCGGCACGGAGGCCGCCGCCGACAAGC
CCCGCCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGGCGCGTCTCCGGC
GGGAGCGCGTCAGCGACCGCCTCCGCGTCCTGCAGAAGCTGGTCCCCGGCGGCAACAAGA
TGGACACGGCGTCCATGCTCGACGAGGCGGCCAGCTACCTCAAGTTCCTCAAGTCCCAGG
TCCAAAAGCTGGAAACCCTAGGCACCACCACCACCACGTCCAAGTTACCGCAGCAGTATT
ACAGCGGCAACATCAACAGCAGCAATAATCACCATGGATTCCTCGGATTCGCAGCAAATA
ACAACACCATTTCAGCTGGCTACGCAAATTCTAATGCTGGAAATGCAACGAAACTGTTGT
AGCACTGTGGCTAGCACAAGTACTTGATACGCACAACGTACGCGTGGTCTCGTCGTCTAT
ATACATGTAGTAACATGCTGCTGTTTTCTACTGTTTCTAGGCTTGGTGGTGATCAGTGTA
CGTACACACGGCACATAATTGGAGTCTTAATTAGTGGTGGAGTGCATGCTGATTTAGTTC
GTGGTCATGTTCTTGTGCAAGATTTAGATTTATAATCTTCCGCTGGCGGATCAGCTGCAT
GGAGTGAGAAGTTACATCAAATTAAAGGGGCCATCTGATGGTTCGTTCAAAAAAAAAAAA
CGGGTGCCATCTGATAGAGGAAAACATGTGGTTCAATAATGGAAAAGAGTGGCCTGGACG
AGCAAT

consensusID : consensus_6806#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1589
fasta sequence

                              [CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTTGAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGTGTGCGCGGTTTTGTCGCGTCGTCGTACGTCGAGAATCCGTGAGCCAGACAGACAAGCCAGTGGTTTGGTGATTCTTGCGGCGGCGCGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGGCAGCTGATGCACCACGACGACATCTACTTGCCGCGCTCGGTGGGGTGCGGGCGGCCGTTCGAGCTGGACGACGCGTTCCTGGGCGCGTGCTTCGGCGCCCAGCTCCAGTGCGACGGTGGCGTCGGCGGCGGCGACGGCGGCGGGTGTCTGCAGGGTACCTCGGGATTTGGCGCCGTGGCTGGAGACCCGTTGGGGTTGCTGTGCTCGGGGGACGTGTTTGCGTCTGTCGCCGAGGGCGCCGGCGGCGCGCACGACGACGGCCTCCTCGACGCGGCGCTCGCCTTCTCCCGGAATCAGCTCGGGGGCGCCGCCTGCGACGGGAGCGACGGCGGGGCCGTGTCGAACGGCGCCATGCTGTCCAGCTACAGCGGCACCACCGGCGGCAACATCTCCTCCGGCGAGTCGAATAACTACAGCGGCGGCGGCGGTGGCTACGACGCCGAGGTGGTGTCGCCGACGTCCACCATGTCCGCAGCCACACAGTCGCTCCACCCCAAGCGAAAGCTATACGACGACCACCACCACCCCGCCGGCATAGCAGCCGCAGCCGCAGCGCCACCGCTGGCGCCGTGCCCACGCCCCACCACCGGCGCCGTCGCCGCGAAGCGGAGGGCTTCCACGTCAGCAACAAGCATCACCTTCGGCCACCAGCCGCACCACCACCACGCGGGCGCCACCACCGCCGGGTACGAGCCTGACATGGAAGCCATGGCGCAGGTGAAGGAGATGATCTACCGGGCGGCGGCCATGCGCCCCGTCCACCTCGGCACGGAGGCCGCCGCCGACAAGCCCCGCCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGGCGCGTCTCCGGCGGGAGCGCGTCAGCGACCGCCTCCGCGTCCTGCAGAAGCTGGTCCCCGGCGGCAACAAGATGGACACGGCGTCCATGCTCGACGAGGCGGCCAGCTACCTCAAGTTCCTCAAGTCCCAGGTCCAAAAGCTGGAAACCCTAGGCACCACCACCACCACGTCCAAGTTACCGCAGCAGTATTACAGCGGCAACATCAACAGCAGCAATAATCACCATGGATTCCTCGGATTCGCAGCAAATAACAACACCATTTCAGCTGGCTACGCAAATTCTAATGCTGGAAATGCAACGAAACTGTTGTAGCACTGTGGCTAGCACAAGTACTTGATACGCACAACGTACGCGTGGTCTCGTCGTCTATATACATGTAGTAACATGCT]

[+] EMBL AK106119             [CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTTGAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGTGTGCGCGGTTTTGTCGCGTCGTCGTACGTCGAGAATCCGTGAGCCAGACAGACAAGCCAGTGGTTTGGTGATTCTTGCGGCGGCGCGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGGCAGCTGATGCACCACGACGACATCTACTTGCCGCGCTCGGTGGGGTGCGGGCGGCCGTTCGAGCTGGACGACGCGTTCCTGGGCGCGTGCTTCGGCGCCCAGCTCCAGTGCGACGGTGGCGTCGGCGGCGGCGACGGCGGCGGGTGTCTGCAGGGTACCTCGGGATTTGGCGCCGTGGCTGGAGACCCGTTGGGGTTGCTGTGCTCGGGGGACGTGTTTGCGTCTGTCGCCGAGGGCGCCGGCGGCGCGCACGACGACGGCCTCCTCGACGCGGCGCTCGCCTTCTCCCGGAATCAGCTCGGGGGCGCCGCCTGCGACGGGAGCGACGGCGGGGCCGTGTCGAACGGCGCCATGCTGTCCAGCTACAGCGGCACCACCGGCGGCAACATCTCCTCCGGCGAGTCGAATAACTACAGCGGCGGCGGCGGTGGCTACGACGCCGAGGTGGTGTCGCCGACGTCCACCATGTCCGCAGCCACACAGTCGCTCCACCCCAAGCGAAAGCTATACGACGACCACCACCACCCCGCCGGCATAGCAGCCGCAGCCGCAGCGCCACCGCTGGCGCCGTGCCCACGCCCCACCACCGGCGCCGTCGCCGCGAAGCGGAGGGCTTCCACGTCAGCAACAAGCATCACCTTCGGCCACCAGCCGCACCACCACCACGCGGGCGCCACCACCGCCGGGTACGAGCCTGACATGGAAGCCATGGCGCAGGTGAAGGAGATGATCTACCGGGCGGCGGCCATGCGCCCCGTCCACCTCGGCACGGAGGCCGCCGCCGACAAGCCCCGCCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGGCGCGTCTCCGGCGGGAGCGCGTCAGCGACCGCCTCCGCGTCCTGCAGAAGCTGGTCCCCGGCGGCAACAAGATGGACACGGCGTCCATGCTCGACGAGGCGGCCAGCTACCTCAAGTTCCTCAAGTCCCAGGTCCAAAAGCTGGAAACCCTAGGCACCACCACCACCACGTCCAAGTTACCGCAGCAGTATTACAGCGGCAACATCAACAGCAGCAATAATCACCATGGATTCCTCGGATTCGCAGCAAATAACAACACCATTTCAGCTGGCTACGCAAATTCTAATGCTGGAAATGCAACGAAACTGTTGTAGCACTGTGGCTAGCACAAGTACTTGATACGCACAACGTACGCGTGGTCTCGTCGTCTATATACATGTAGTAACATGCT]




>consensus_6806#1
CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTT
GAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTA
ACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTT
CCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGT
GTGCGCGGTTTTGTCGCGTCGTCGTACGTCGAGAATCCGTGAGCCAGACAGACAAGCCAG
TGGTTTGGTGATTCTTGCGGCGGCGCGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGG
CAGCTGATGCACCACGACGACATCTACTTGCCGCGCTCGGTGGGGTGCGGGCGGCCGTTC
GAGCTGGACGACGCGTTCCTGGGCGCGTGCTTCGGCGCCCAGCTCCAGTGCGACGGTGGC
GTCGGCGGCGGCGACGGCGGCGGGTGTCTGCAGGGTACCTCGGGATTTGGCGCCGTGGCT
GGAGACCCGTTGGGGTTGCTGTGCTCGGGGGACGTGTTTGCGTCTGTCGCCGAGGGCGCC
GGCGGCGCGCACGACGACGGCCTCCTCGACGCGGCGCTCGCCTTCTCCCGGAATCAGCTC
GGGGGCGCCGCCTGCGACGGGAGCGACGGCGGGGCCGTGTCGAACGGCGCCATGCTGTCC
AGCTACAGCGGCACCACCGGCGGCAACATCTCCTCCGGCGAGTCGAATAACTACAGCGGC
GGCGGCGGTGGCTACGACGCCGAGGTGGTGTCGCCGACGTCCACCATGTCCGCAGCCACA
CAGTCGCTCCACCCCAAGCGAAAGCTATACGACGACCACCACCACCCCGCCGGCATAGCA
GCCGCAGCCGCAGCGCCACCGCTGGCGCCGTGCCCACGCCCCACCACCGGCGCCGTCGCC
GCGAAGCGGAGGGCTTCCACGTCAGCAACAAGCATCACCTTCGGCCACCAGCCGCACCAC
CACCACGCGGGCGCCACCACCGCCGGGTACGAGCCTGACATGGAAGCCATGGCGCAGGTG
AAGGAGATGATCTACCGGGCGGCGGCCATGCGCCCCGTCCACCTCGGCACGGAGGCCGCC
GCCGACAAGCCCCGCCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGGCG
CGTCTCCGGCGGGAGCGCGTCAGCGACCGCCTCCGCGTCCTGCAGAAGCTGGTCCCCGGC
GGCAACAAGATGGACACGGCGTCCATGCTCGACGAGGCGGCCAGCTACCTCAAGTTCCTC
AAGTCCCAGGTCCAAAAGCTGGAAACCCTAGGCACCACCACCACCACGTCCAAGTTACCG
CAGCAGTATTACAGCGGCAACATCAACAGCAGCAATAATCACCATGGATTCCTCGGATTC
GCAGCAAATAACAACACCATTTCAGCTGGCTACGCAAATTCTAATGCTGGAAATGCAACG
AAACTGTTGTAGCACTGTGGCTAGCACAAGTACTTGATACGCACAACGTACGCGTGGTCT
CGTCGTCTATATACATGTAGTAACATGCT

consensusID : consensus_6806#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence

                              [CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTTGAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGGTATGAACAGAGGAGATATCCTGTTCCCTGTATATGCATACTATTTCGATACAGTAGTTTTCTCGACATGAGATTTCATGCATGCAGAATTTCACGCTCGAAGTTACCTAATTAGAAGTAATCCATACTCTCGAAACAACCTATTTAAGTAGCACTACTATGTAGGAACAGAATAACCGACGTCGTTGCCCGGGCGTGTCAGTTAACAAACGACAAAGATGTGCAACGCACAGCCTGCAAGTTACATAAGCATCCGCTCGTTCAGTTAAGCTGGCAGATCGACCACACACTAGCTTTGATTTGCGCTAACAGTGTATCAGATCTAACTAGCTCTTGGTGTAATAAGATGAACTGTAGAGCGAAGCGGATACGGACAGTGTAATTATGAGGCTCGAGACATCTTCCTCTCCCGTCCCTGTCTGAACATCAATGCCGCTCACCAGCGCCACTGTTTCTTGATGCTGATTACGGATTTGTAATTCCATCGATCACGCATGCGCGCGCTCTTCTTGTAATTATCTAGAGAGATTAATTGCTCGTCTTGATCG]

[+] EMBL AK109307             [CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTTGAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGGTATGAACAGAGGAGATATCCTGTTCCCTGTATATGCATACTATTTCGATACAGTAGTTTTCTCGACATGAGATTTCATGCATGCAGAATTTCACGCTCGAAGTTACCTAATTAGAAGTAATCCATACTCTCGAAACAACCTATTTAAGTAGCACTACTATGTAGGAACAGAATAACCGACGTCGTTGCCCGGGCGTGTCAGTTAACAAACGACAAAGATGTGCAACGCACAGCCTGCAAGTTACATAAGCATCCGCTCGTTCAGTTAAGCTGGCAGATCGACCACACACTAGCTTTGATTTGCGCTAACAGTGTATCAGATCTAACTAGCTCTTGGTGTAATAAGATGAACTGTAGAGCGAAGCGGATACGGACAGTGTAATTATGAGGCTCGAGACATCTTCCTCTCCCGTCCCTGTCTGAACATCAATGCCGCTCACCAGCGCCACTGTTTCTTGATGCTGATTACGGATTTGTAATTCCATCGATCACGCATGCGCGCGCTCTTCTTGTAATTATCTAGAGAGATTAATTGCTCGTCTTGATCG]




>consensus_6806#2
CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTT
GAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTA
ACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTT
CCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGG
TATGAACAGAGGAGATATCCTGTTCCCTGTATATGCATACTATTTCGATACAGTAGTTTT
CTCGACATGAGATTTCATGCATGCAGAATTTCACGCTCGAAGTTACCTAATTAGAAGTAA
TCCATACTCTCGAAACAACCTATTTAAGTAGCACTACTATGTAGGAACAGAATAACCGAC
GTCGTTGCCCGGGCGTGTCAGTTAACAAACGACAAAGATGTGCAACGCACAGCCTGCAAG
TTACATAAGCATCCGCTCGTTCAGTTAAGCTGGCAGATCGACCACACACTAGCTTTGATT
TGCGCTAACAGTGTATCAGATCTAACTAGCTCTTGGTGTAATAAGATGAACTGTAGAGCG
AAGCGGATACGGACAGTGTAATTATGAGGCTCGAGACATCTTCCTCTCCCGTCCCTGTCT
GAACATCAATGCCGCTCACCAGCGCCACTGTTTCTTGATGCTGATTACGGATTTGTAATT
CCATCGATCACGCATGCGCGCGCTCTTCTTGTAATTATCTAGAGAGATTAATTGCTCGTC
TTGATCG

consensusID : consensus_6806#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 513
fasta sequence

                              [CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTTGAGGCTCCGGCCGGTCGCCGATTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGGTATGAACAGAGGAGATATCCTGTTCCCTGTATATGCATACTATTTCGATACAGTAGTTTTCTCGACATGAGATTTCATGCATGCAGAATTTCACGCTCGAAAGTTACCTAATTAGAAAGTAATCCATACTCTCGAAACAACCCTATTTTAAGTAGCACTACTATGTAGGAACAGAATAACTGACGTCGTTGCCCGGNCCGTGTCAGTTAACAAAACGAACAAAGATGTGCAACGCACAGCCCTGCCAAGNTACATTAAGCCAAAAAAAAAAAAA]

[+] EMBL CB096557             [CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTTGAGGCTCCGGCCGGTCGCCGATTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTAACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTTCCGTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGGTATGAACAGAGGAGATATCCTGTTCCCTGTATATGCATACTATTTCGATACAGTAGTTTTCTCGACATGAGATTTCATGCATGCAGAATTTCACGCTCGAAAGTTACCTAATTAGAAAGTAATCCATACTCTCGAAACAACCCTATTTTAAGTAGCACTACTATGTAGGAACAGAATAACTGACGTCGTTGCCCGGNCCGTGTCAGTTAACAAAACGAACAAAGATGTGCAACGCACAGCCCTGCCAAGNTACATTAAGCCAAAAAAAAAAAAA]




>consensus_6806#3
CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTT
GAGGCTCCGGCCGGTCGCCGATTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTA
ACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTT
CCGTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGGT
ATGAACAGAGGAGATATCCTGTTCCCTGTATATGCATACTATTTCGATACAGTAGTTTTC
TCGACATGAGATTTCATGCATGCAGAATTTCACGCTCGAAAGTTACCTAATTAGAAAGTA
ATCCATACTCTCGAAACAACCCTATTTTAAGTAGCACTACTATGTAGGAACAGAATAACT
GACGTCGTTGCCCGGNCCGTGTCAGTTAACAAAACGAACAAAGATGTGCAACGCACAGCC
CTGCCAAGNTACATTAAGCCAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6806#2      CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTT 60
consensus_6806#3      CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTT 60
consensus_6806#0      CTGCCCTGCTGCCTCACAGCCTCAGCAAGACA----------ATCAATTTTGGCCCTCTT 50
consensus_6806#1      CTGCCCTGCTGCCTCACAGCCTCAGCAAGACAGTACGTACAGATCAATTTTGGCCCTCTT 60
                      ********************************          ******************

consensus_6806#2      GAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTA 120
consensus_6806#3      GAGGCTCCGGCCGGTCGCCGATTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTA 120
consensus_6806#0      GAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTA 110
consensus_6806#1      GAGGCTCCGGCCGGTCGCCGACTCGCCGTCGTCGAAGGTGCTCTCCGGCCGGCGGAGTTA 120
                      ********************* **************************************

consensus_6806#2      ACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTT 180
consensus_6806#3      ACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTT 180
consensus_6806#0      ACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTT 170
consensus_6806#1      ACATTGAGCTTGATTTCAAGCCGCGCTCCGATCCGACCGGCAAAGCGCCGAAGCTGCCTT 180
                      ************************************************************

consensus_6806#2      CCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAG- 239
consensus_6806#3      CCGTT-GTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAG- 238
consensus_6806#0      CCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGT 230
consensus_6806#1      CCGTTTGTTTCACTCTGGTCTCTGGGGGCTCGCCATCAGCCATCCGTACCGAGCTGTAGT 240
                      ***** ***************************************************** 

consensus_6806#2      GTATGAA---CAGAGGAGATATCCTGTTCCCTGTATATGCATACTATTTCGATA---CAG 293
consensus_6806#3      GTATGAA---CAGAGGAGATATCCTGTTCCCTGTATATGCATACTATTTCGATA---CAG 292
consensus_6806#0      GTGCGCGGTTTTGTCGCGTCGTCGTACGTCGAGAATCCGTGAGCCAGACAGACAAGCCAG 290
consensus_6806#1      GTGCGCGGTTTTGTCGCGTCGTCGTACGTCGAGAATCCGTGAGCCAGACAGACAAGCCAG 300
                      **  *       *  * *   ** *    *  * **  *    * *    ** *   ***

consensus_6806#2      TAGTTTTCTCGA-CATGAGATTTCATGC--ATGCAGAATTTCA----------CGCTCGA 340
consensus_6806#3      TAGTTTTCTCGA-CATGAGATTTCATGC--ATGCAGAATTTCA----------CGCTCGA 339
consensus_6806#0      TGGTTTGGTGATTCTTGCGGCGGCGCGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGG 350
consensus_6806#1      TGGTTTGGTGATTCTTGCGGCGGCGCGGCGATGGAGACCTTCGGCTGGGCCGGCGGCGGG 360
                      * ****  *    * ** *    *  *   *** ***  ***           **   * 

consensus_6806#2      A-GTTACCTAATTAGAA-GTAATCCAT-----ACTCTCGAAACAACCT--------ATTT 385
consensus_6806#3      AAGTTACCTAATTAGAAAGTAATCCAT-----ACTCTCGAAACAACCCTA------TTTT 388
consensus_6806#0      CAGCTGATGCACCACGACGACATCTACTTGCCGCGCTCGGTGGGGTGCGGGCGGCCGTTC 410
consensus_6806#1      CAGCTGATGCACCACGACGACATCTACTTGCCGCGCTCGGTGGGGTGCGGGCGGCCGTTC 420
                        * *     *  *  * *  *** *       * ****                  ** 

consensus_6806#2      AAGTAGCACTAC---TATGTAGGAACAGAAT-----AACCGACGTCGTTGCCCGGGC-GT 436
consensus_6806#3      AAGTAGCACTAC---TATGTAGGAACAGAAT-----AACTGACGTCGTTGCCCGGNCCGT 440
consensus_6806#0      GAGCTGGACGACGCGTTCCTGGGCGCGTGCTTCGGCGCCCAGCTCCAGTGCGACGGTGGC 470
consensus_6806#1      GAGCTGGACGACGCGTTCCTGGGCGCGTGCTTCGGCGCCCAGCTCCAGTGCGACGGTGGC 480
                       **  * ** **   *   * **  *    *       *   *  *  ***   *   * 

consensus_6806#2      GTCAGT--TAACAAAC--GACAAAGATGTGCAACGCAC----AGCCTG--CAAGTTACAT 486
consensus_6806#3      GTCAGT--TAACAAAACGAACAAAGATGTGCAACGCAC----AGCCCTGCCAAGNTACAT 494
consensus_6806#0      GTCGGCGGCGGCGACGGCGGCGGGTGTCTGCAGGGTACCTCGGGATTTGGCGCCGTGGCT 530
consensus_6806#1      GTCGGCGGCGGCGACGGCGGCGGGTGTCTGCAGGGTACCTCGGGATTTGGCGCCGTGGCT 540
                      *** *      * *      *     * ****  * **     *      *    *   *

consensus_6806#2      AAGCATCCGCTCGTTCAGTTAAGCTGGCAGATCGACCACACACTAGCTTTGATTTGCGCT 546
consensus_6806#3      TA--AGCCAAAAAAAAAAAAA--------------------------------------- 513
consensus_6806#0      GGAGACCCGTTGGGGTTGCTGTGCTCGGGGGACGTGTTTGCGTCTGTCGCCGAGGGCGCC 590
consensus_6806#1      GGAGACCCGTTGGGGTTGCTGTGCTCGGGGGACGTGTTTGCGTCTGTCGCCGAGGGCGCC 600
                          * **                                                    

consensus_6806#2      AACAGTGTATCAGAT--CTAACTAGCTCTTGGTGTAATAAGATGAACTGTAGAGCGAAGC 604
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      GGCGGCGCGCACGACGACGGCCTCCTCGACGCGGCGCTCGCCTTCTCCCGGAATCAGCTC 650
consensus_6806#1      GGCGGCGCGCACGACGACGGCCTCCTCGACGCGGCGCTCGCCTTCTCCCGGAATCAGCTC 660
                                                                                  

consensus_6806#2      GGATACGGACAGTGTAATTATGAGGCTCGAGACATCTTCCTCTCCCGTCCCTGTCTGAAC 664
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      GGGGGCGCCGCCTGCGACGGGAGCGACGGCGGGGCCGTGTCGAACGGCGCCATGCTGTCC 710
consensus_6806#1      GGGGGCGCCGCCTGCGACGGGAGCGACGGCGGGGCCGTGTCGAACGGCGCCATGCTGTCC 720
                                                                                  

consensus_6806#2      ATCAATGCCGCT--CACCAGCGCCACTGTTTCTTGATGCTGATTACGGATTTGTAATTCC 722
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      AGCTACAGCGGCACCACCGGCGGCAACATCTCCTCCGGCGAGTCGAATAACTACAGCGGC 770
consensus_6806#1      AGCTACAGCGGCACCACCGGCGGCAACATCTCCTCCGGCGAGTCGAATAACTACAGCGGC 780
                                                                                  

consensus_6806#2      ATCGATCACGCATGCGCGCGCTCTTCTTGTAATTATCTAGAGAGATTAATTGCTCGTCTT 782
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      GGCGGCGGTGGCTACG-ACGCCGATGTGGTG-TCGCCGACGTCCACCATGTCCGCAGCCA 828
consensus_6806#1      GGCGGCGGTGGCTACG-ACGCCGAGGTGGTG-TCGCCGACGTCCACCATGTCCGCAGCCA 838
                                                                                  

consensus_6806#2      GATCG------------------------------------------------------- 787
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      CACAGTCGCTCCACCCCAAGCGAAAGCTATACGACGACCACCACCACCCCGCCGGCATAG 888
consensus_6806#1      CACAGTCGCTCCACCCCAAGCGAAAGCTATACGACGACCACCACCACCCCGCCGGCATAG 898
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      CAGCCGCAGCCGCAGCGCCACCGCTGGCGCCGTGCCCACGCCCCACCACCGGCGCCGTCG 948
consensus_6806#1      CAGCCGCAGCCGCAGCGCCACCGCTGGCGCCGTGCCCACGCCCCACCACCGGCGCCGTCG 958
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      CCGCGAAGCGGAGGGCTTCCACGTCAGCAACAAGCATCACCTTCGGCCACCAGCCGCACC 1008
consensus_6806#1      CCGCGAAGCGGAGGGCTTCCACGTCAGCAACAAGCATCACCTTCGGCCACCAGCCGCACC 1018
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      ACCACCACGCGGGCGCCACCACCGCCGGGTACGAGCCTGACATGGAAGCCATGGCGCAGG 1068
consensus_6806#1      ACCACCACGCGGGCGCCACCACCGCCGGGTACGAGCCTGACATGGAAGCCATGGCGCAGG 1078
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      TGAAGGAGATGATCTACCGGGCGGCGGCCATGCGCCCCGTCCACCTCGGCACGGAGGCCG 1128
consensus_6806#1      TGAAGGAGATGATCTACCGGGCGGCGGCCATGCGCCCCGTCCACCTCGGCACGGAGGCCG 1138
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      CCGCCGACAAGCCCCGCCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGG 1188
consensus_6806#1      CCGCCGACAAGCCCCGCCGCAAGAACGTGCGCATCTCGAGCGACCCGCAGACGGTGGCGG 1198
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      CGCGTCTCCGGCGGGAGCGCGTCAGCGACCGCCTCCGCGTCCTGCAGAAGCTGGTCCCCG 1248
consensus_6806#1      CGCGTCTCCGGCGGGAGCGCGTCAGCGACCGCCTCCGCGTCCTGCAGAAGCTGGTCCCCG 1258
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      GCGGCAACAAGATGGACACGGCGTCCATGCTCGACGAGGCGGCCAGCTACCTCAAGTTCC 1308
consensus_6806#1      GCGGCAACAAGATGGACACGGCGTCCATGCTCGACGAGGCGGCCAGCTACCTCAAGTTCC 1318
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      TCAAGTCCCAGGTCCAAAAGCTGGAAACCCTAGGCACCACCACCACCACGTCCAAGTTAC 1368
consensus_6806#1      TCAAGTCCCAGGTCCAAAAGCTGGAAACCCTAGGCACCACCACCACCACGTCCAAGTTAC 1378
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      CGCAGCAGTATTACAGCGGCAACATCAACAGCAGCAATAATCACCATGGATTCCTCGGAT 1428
consensus_6806#1      CGCAGCAGTATTACAGCGGCAACATCAACAGCAGCAATAATCACCATGGATTCCTCGGAT 1438
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      TCGCAGCAAATAACAACACCATTTCAGCTGGCTACGCAAATTCTAATGCTGGAAATGCAA 1488
consensus_6806#1      TCGCAGCAAATAACAACACCATTTCAGCTGGCTACGCAAATTCTAATGCTGGAAATGCAA 1498
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      CGAAACTGTTGTAGCACTGTGGCTAGCACAAGTACTTGATACGCACAACGTACGCGTGGT 1548
consensus_6806#1      CGAAACTGTTGTAGCACTGTGGCTAGCACAAGTACTTGATACGCACAACGTACGCGTGGT 1558
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      CTCGTCGTCTATATACATGTAGTAACATGCTGCTGTTTTCTACTGTTTCTAGGCTTGGTG 1608
consensus_6806#1      CTCGTCGTCTATATACATGTAGTAACATGCT----------------------------- 1589
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      GTGATCAGTGTACGTACACACGGCACATAATTGGAGTCTTAATTAGTGGTGGAGTGCATG 1668
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      CTGATTTAGTTCGTGGTCATGTTCTTGTGCAAGATTTAGATTTATAATCTTCCGCTGGCG 1728
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      GATCAGCTGCATGGAGTGAGAAGTTACATCAAATTAAAGGGGCCATCTGATGGTTCGTTC 1788
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#2      ------------------------------------------------------------
consensus_6806#3      ------------------------------------------------------------
consensus_6806#0      AAAAAAAAAAAACGGGTGCCATCTGATAGAGGAAAACATGTGGTTCAATAATGGAAAAGA 1848
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#2      ------------------
consensus_6806#3      ------------------
consensus_6806#0      GTGGCCTGGACGAGCAAT 1866
consensus_6806#1      ------------------