These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 558 fasta sequence [CGTGAAATATCTAGGCTGTTCTGGAAATCACAAAGGAATTCCTTGAGTTATTGCAGTCCTC-TTCAATTAAAGATTTTCGGTGGCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCTGCTGGTCC-GACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGCGACCCAACATGCTCAAGGCTT-CCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCAACATTTTATCTGCTTGTTTCCATTCCTAC-ATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTACGGAGTACTAGGCCTTTGTCTGTCATTACTGTATTCTACTATATTAGTAAGGAGTTCTTTTTTTTTTTGCAAGGTATTAAGGAGTTCTTTATATTGTTTGGGACAGGGAGTCCTATGTTTATGAGATGTTTTCCCAGGTTTTATTAGTTCTATATATCCCCCGCAAATTCTATTTAAAAAAAAAA] [-] EMBL BU667239 [CGTGAAATATCTAGGCTGTTCTGGAAATCACAAAGGAATTCCTTGAGTTATTGCAGTCCTC TTCAATTAAAGATTTTCGGTGGCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCTGCTGGTCC GACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGCGACCCAACATGCTCAAGGCTT CCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCAACATTTTATCTGCTTGTTTCCATTCCTAC ATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTAC ] [+] EMBL BI812250 [ TCCTCGTTCAATTAAAGATTTTCGGT GCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCT CT GTCCGGACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGC A CCAACATGCTCAAGGCTTGCCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCAACATTTTATCTGCTTGTTTCCATTCCTACAATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTACGGAGTACTAGGCCTTTGTCTGTCATTACTGTATTCTACTATATTAGTAAGGAGTTCTTTTTTTTTTTGCAAGGTATTAAGGAGTTCTTTATATTGTTTGGGACAGGGAGTCCTATGTTTATGAGATGTTTTCCCAGGTTTTATTAGTTCTATATATCCCCCGCAAATTCTATTTAAAAAAAAAA] consensusID : consensus_6808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence [CCATTCAGTTCCTCATGGCCCCTGAAATATCTAGCTTTCTGGAAATCACACAAGGAATTCCTTGAGTTATTCCAGTCCTCTTCAATTAAAGATTTTCGGTGCCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCTGCTGGTCCGACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGCACCAAACATGCTCAAGGCTTGCCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCCACATTTTATCTGCTTGTTTCCATTCCTACAATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACTGTATTCTACTATATTATTAAGGAGTTCTTTTTTTTTTTGCCAAAAAAAAACAACAAAAAAAAAA] [+] EMBL BI812428 [CCATTCAGTTCCTCATGGCCCCTGAAATATCTAGCTTTCTGGAAATCACACAAGGAATTCCTTGAGTTATTCCAGTCCTCTTCAATTAAAGATTTTCGGTGCCAGTATTCTCTTCGAGACTCTGAGGCCAGTGTTGATATCTAGCTATCTGCTGGTCCGACACTCTCACTAGACAGTGAAAATGTTTTCGACAAGGACGGGATATATGGATTATTGGAGCATCATCGATCCTCTTGCACCAAACATGCTCAAGGCTTGCCGTTTTCGTTTCCGTTTCATGAATAAATGAATGTCAAGTGGTCCTCGTAACCTACTTGTGCTGTCCACATTTTATCTGCTTGTTTCCATTCCTACAATACTTCTGGACTACGATTCCTGTTTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACTGTATTCTACTATATTATTAAGGAGTTCTTTTTTTTTTTGCCAAAAAAAAACAACAAAAAAAAAA] consensusID : consensus_6808#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [CAGTCCGTTTCAGGTGGCATNATGTCTCTTGCGGAGACTCTGATGGCCTAGGTGTGTGATATCTAGCTGATGCTGCTGGTCACGACACTGCTGCACTAGAGCAGTGGAAAATGTTGTTGCGACAAGGACGGGATATATGGGATGTATGTGGGAGCATGCATCGATGCCTGCTTGGCACCCAACAATGGCTGCAAGGCTTCCGTTTTCCGTTTGCCGTGTGTGCATGGAATAGAATGGAATGTGCAAGTGGGTCCTCGTGAACCTACCTTGGTAGCTGTGCAACATGTCTTATCTNGCTTGTTTCCATTGCCTACAATGACTTCTGGGACTACGATTCCTGTTNTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACNGTATTCTACTATATTATTAAGGAGTTCTTTTTTTTAAAAAAA] [+] EMBL BM420800 [CAGTCCGTTTCAGGTGGCATNATGTCTCTTGCGGAGACTCTGATGGCCTAGGTGTGTGATATCTAGCTGATGCTGCTGGTCACGACACTGCTGCACTAGAGCAGTGGAAAATGTTGTTGCGACAAGGACGGGATATATGGGATGTATGTGGGAGCATGCATCGATGCCTGCTTGGCACCCAACAATGGCTGCAAGGCTTCCGTTTTCCGTTTGCCGTGTGTGCATGGAATAGAATGGAATGTGCAAGTGGGTCCTCGTGAACCTACCTTGGTAGCTGTGCAACATGTCTTATCTNGCTTGTTTCCATTGCCTACAATGACTTCTGGGACTACGATTCCTGTTNTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACNGTATTCTACTATATTATTAAGGAGTTCTTTTTTTTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6808#0 --------------------CGTGAAATATCTAGGCTGTTCTGGAAATCACA-AAGGAAT 39 consensus_6808#1 CCATTCAGTTCCTCATGGCCCCTGAAATATCTAGCTT--TCTGGAAATCACACAAGGAAT 58 consensus_6808#2 ------------------------------------------------------------ consensus_6808#0 TCCTTGAGTTATTGCAGTCCTCTTCAATTAAAGATTTTCGGTGGCAGTAT-TCTCTTC-- 96 consensus_6808#1 TCCTTGAGTTATTCCAGTCCTCTTCAATTAAAGATTTTCGGTGCCAGTAT-TCTCTTC-- 115 consensus_6808#2 ------------------------CAGTCCG---TTTCAGGTGGCATNATGTCTCTTGCG 33 ** * *** **** ** ** ****** consensus_6808#0 GAGACTCTGA-GGCC--AGTGT-TGATATCTAGCTAT--CTGCTGGTC-CGACACTCT-- 147 consensus_6808#1 GAGACTCTGA-GGCC--AGTGT-TGATATCTAGCTAT--CTGCTGGTC-CGACACTCT-- 166 consensus_6808#2 GAGACTCTGATGGCCTAGGTGTGTGATATCTAGCTGATGCTGCTGGTCACGACACTGCTG 93 ********** **** **** ************ ********* ******* consensus_6808#0 CACTAGA-CAGTG-AAAATGTTTT--CGACAAGGACGGGATATATGGATTATT----GGA 199 consensus_6808#1 CACTAGA-CAGTG-AAAATGTTTT--CGACAAGGACGGGATATATGGATTATT----GGA 218 consensus_6808#2 CACTAGAGCAGTGGAAAATGTTGTTGCGACAAGGACGGGATATATGGGATGTATGTGGGA 153 ******* ***** ******** * ********************* * * *** consensus_6808#0 GCAT-CATCGATCCT--CTTGCGACCCAACAT--GCT-CAAGGCTT-CCGTTTTCGTTT- 251 consensus_6808#1 GCAT-CATCGATCCT--CTTGC-ACCAAACAT--GCT-CAAGGCTTGCCGTTTTCGTTT- 270 consensus_6808#2 GCATGCATCGATGCCTGCTTGGCACCCAACAATGGCTGCAAGGCTTCCGTTTTCCGTTTG 213 **** ******* * **** *** **** *** ******** * *** ***** consensus_6808#0 CCGTTT---CATG-AATAAAT--GAATGT-CAAGTGG-TCCTCGT-AACCTACTT--GT- 299 consensus_6808#1 CCGTTT---CATG-AATAAAT--GAATGT-CAAGTGG-TCCTCGT-AACCTACTT--GT- 318 consensus_6808#2 CCGTGTGTGCATGGAATAGAATGGAATGTGCAAGTGGGTCCTCGTGAACCTACCTTGGTA 273 **** * **** **** * ****** ******* ******* ******* * ** consensus_6808#0 GCTGT-CAACAT--TTTATCTG-CTTGTTTCCATT-CCTACA-T-ACTTCTGG-ACTACG 351 consensus_6808#1 GCTGT-CCACAT--TTTATCTG-CTTGTTTCCATT-CCTACAAT-ACTTCTGG-ACTACG 371 consensus_6808#2 GCTGTGCAACATGTCTTATCTNGCTTGTTTCCATTGCCTACAATGACTTCTGGGACTACG 333 ***** * **** ****** ************ ****** * ******** ****** consensus_6808#0 ATTCCTGTTT-CAGTACTGACTACGGAGTACTAGGCCTTTGTCTGTCATTACTGTATTCT 410 consensus_6808#1 ATTCCTGTTT-CAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACTGTATTCT 430 consensus_6808#2 ATTCCTGTTNTCAGTACTGACTACGGAGTACTAGGCTTTTGTCTGTCATTACNGTATTCT 393 ********* ************************* *************** ******* consensus_6808#0 ACTATATTAGTAAGGAGTTCTTTTTTTTTTTGCAAGGTATTAAGGAGTTCTTTATATTGT 470 consensus_6808#1 ACTATATTATTAAGGAGTTCTTTTTTTTTTTGCCAAAAAAAAACAACAAAAAAAAAA--- 487 consensus_6808#2 ACTATATTATTAAGGAGTTCTTTTTTTTAAAAAAA------------------------- 428 ********* ****************** * consensus_6808#0 TTGGGACAGGGAGTCCTATGTTTATGAGATGTTTTCCCAGGTTTTATTAGTTCTATATAT 530 consensus_6808#1 ------------------------------------------------------------ consensus_6808#2 ------------------------------------------------------------ consensus_6808#0 CCCCCGCAAATTCTATTTAAAAAAAAAA 558 consensus_6808#1 ---------------------------- consensus_6808#2 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||