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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1680 fasta sequence
[TCTCACCTCTCGCGCTTCTTGTTGTCATCTTCCACCCCATCAGAAGGCTTCTGCTGCTGCTGAAAGCCTGATGAAATTGGGTGATTAGGTGCTTAACATAATCCCAATCCTAGAAAAATACATTCGGAGTGGTTGCTGCTGAGCTCAACCAATCAAGCTTGTTGGGGAGGCAAGCAGTCACAATGATGAGCTTCAACAAGAGCCAAGAAGGATTTGGGCAGGTTGCTGCTGTGGCCACCCTGGCCTCCAATGGAGGAGGCTCTCTACCATGGCTGCTGTACGGCGAGCCACTGGGGTAGGGGAAGCCGGCCATGTCGCCGGAGGGCG-TGGTGCCGAGAGCACAGACTNCTCTGGATCCTCCTCAGGTTCCAGCCA-TGGAC-AGGGGTGT-CCTGAAATTC-TGAACTTC-TCCATGGTTCCAGGTAAAGGAGAAAAATGTTCTGAGCACTCAACTACTATTGCTCTGCAGTCACCATTTGCAGAATATAATGGCTGTTTTGAGCTGGGCCTTGGTCAATCTGTGGTTCCCTCTAATTATCCTTATGCTGACCAGCACTATGGCCTACTTTCTCCTTATGGAGTGAGACCAACGCCTAGCGGGCGAATTCTTATTCCACCAAATATGCCAGCTGATGCACCAATTTATGTGAATGCAAAACAGTGTTCAGCCATCATTCGACGTCGCCATGCTCGTGCCAAGGCAGAGAGGGAGAATAGGCTGGTCAAAGCTAG-AAAACCAT-ATCTTCACGAATCACGCCATCTTCATGCAATGCGTCGTGCAAGAGGCTCTGGTGGGCGCTTCCTCAACACGAAGAAAGAGACCAATGGGAAAACCACTGGTGGAGGCAGGAAGGTGATGGACATCATCATCCCGCCTCTGTGCCCCGCCGCATCTCCCAGCTCGGAGCAGTGCAACCCAAGCAGCGTTTCCAGCCTGTCCGGGTCAGAGGTGTCGAGCATATATGAACACGAAGACATGGACCACTTCCATAGCTTTGATCATCTCCGGACACACTTCTTCACCCCGCTCCCGAGCCTCATGGATGTCGAGCACGGGGCTGGTAACCCCTTCAAGTGGACAGCAGCCTCTGATGGCTGCTGTGACCTCCTCAAAGCATGACTAGAGGGGGGATACACCGGGCAGCCGAAGCTGGCAAACATCAGCAGTTTCTGCTGGATACATTGCCCAGCTCCAGGTCAGGGATTGTCCCTGCTGGTATTGGCTGTCTGTAGGCAACTCATTCTTGGCTGATCGGTTCCGCTCATCGCCTACTTGTCCCGGAAACTCCAGCACCGGTTTCTGGGATCCTGCGGTGATCAGAACAACCCATCGCGTGTAAAAAAAAAAAAAAATCATCTATGCTATGCTGTTACTGCTTGCTACCATTATCTGAACTGCTACTACTAGGTAGCAAGCTTAATCTGGCAAGGTAAATAAAGTCTGGAACTTTGAACTGGTTCCAGTGGTGATGATTGTGGTGTGCTTGTATCCTGATAACTATTGTGAGTTTGAGACCTGGCTTTGTTGATCTACTGAACTACTACTGTAGCACTATGCTTGAAGTTTGTGTGGGCTTGGTTTGCAGTTTGTATTGTTAAAAAAAACTCAAATCTAGTGATGTATTAAGACCTTGTTTGTGTGTATCTTGTTAATGTGGTATATCTGCAAGAAGGTATAATCTG]
[+] EMBL C27163 [TCTCACCTCTCGCGCTTCTTGTTGTCATCTTCCACCCCATCAGAAGGCTTCTGCTGCTGCTGAAAGCCTGATGAAATTGGGTGATTAGGTGCTTAACATAATCCCAATCCTAGAAAAATACATTCGGAGTGGTTGCTGCTGAGCTCAACCAATCAAGCTTGTTGGGGAGGCAAGCAGTCACAATGATGAGCTTCAACAAGAGCCAAGAAGGATTTGGGCAGGTTGCTGCTGTGGCCACCCTGGCCTCCAATGGAGGAGGCTCTCTACCATGGCTGCTGTACGGCGAGCCACTGGGGTAGGGGAAGCCGGCCATGTCGCCGGAGGGCGTTGGTGCCGAGAGCACAGACTNCTCTGGATCCTCCTCAGGTTCCAGCCATTGGACAAGGGGTGT CCTGAAATTCTTGAACTTCTTCCAT ]
[+] EMBL AK073742 [ TGAAAGCCTGATGAAATTGGGTGATTAGGTGCTTAACATAATCCCAATCCTAGAAAAATACATTCGGAGTGGTTGCTGCTGAGCTCAACCAATCAAGCTTGTTGGGGAGGCAAGCAGTCACAATGATGAGCTTCAACAAGAGCCAAGAAGGATTTGGGCAGGTTGCTGCTGTGGCCACCCTGGCCTCCAATGGAGGAGGCTCTCTACCATGGCTGCTGTACGGCGAGCCACTGGGGCAGGGGAAGCCGGCCATGTCGCCGGAGGGCG TGGTGCCGAGAGCACAGACTCCTCTGGATCCTCCTCAGGTTCCAGCCA TGGAC AGGGGTGTCCCTGAAATTC TGAACTTC TCCATGGTTCCAGGTAAAGGAGAAAAATGTTCTGAGCACTCAACTACTATTGCTCTGCAGTCACCATTTGCAGAATATAATGGCTGTTTTGAGCTGGGCCTTGGTCAATCTGTGGTTCCCTCTAATTATCCTTATGCTGACCAGCACTATGGCCTACTTTCTCCTTATGGAGTGAGACCAACGCCTAGCGGGCGAATTCTTATTCCACCAAATATGCCAGCTGATGCACCAATTTATGTGAATGCAAAACAGTGTTCAGCCATCATTCGACGTCGCCATGCTCGTGCCAAGGCAGAGAGGGAGAATAGGCTGGTCAAAGCTAG AAAACCAT ATCTTCACGAATCACGCCATCTTCATGCAATGCGTCGTGCAAGAGGCTCTGGTGGGCGCTTCCTCAACACGAAGAAAGAGACCAATGGGAAAACCACTGGTGGAGGCAGGAAGGTGATGGACATCATCATCCCGCCTCTGTGCCCCGCCGCATCTCCCAGCTCGGAGCAGTGCAACCCAAGCAGCGTTTCCAGCCTGTCCGGGTCAGAGGTGTCGAGCATATATGAACACGAAGACATGGACCACTTCCATAGCTTTGATCATCTCCGGACACACTTCTTCACCCCGCTCCCGAGCCTCATGGATGTCGAGCACGGGGCTGGTAACCCCTTCAAGTGGACAGCAGCCTCTGATGGCTGCTGTGACCTCCTCAAAGCATGACTAGAGGGGGGATACACCGGGCAGCCGAAGCTGGCAAACATCAGCAGTTTCTGCTGGATACATTGCCCAGCTCCAGGTCAGGGATTGTCCCTGCTGGTATTGGCTGTCTGTAGGCAACTCATTCTTGGCTGATCGGTTCCGCTCATCGCCTACTTGTCCCGGAAACTCCAGCACCGGTTTCTGGGATCCTGCGGTGATCAGAACAACCCATCGCGTGTAAAAAAAAAAAAAAATCATCTATGCTATGCTGTTACTGCTTGCTACCATTATCTGAACTGCTACTACTAGGTAGCAAGCTTAATCTGGCAAGGTAAATAAAGTCTGGAACTTTGAACTGGTTCCAGTGGTGATGATTGTGGTGTGCTTGTATCCTGATAACTATTGTGAGTTTGAGACCTGGCTTTGTTGATCTACTGAACTACTACTGTAGCACTATGCTTGAAGTTTGTGTGGGCTTGGTTTGCAGTTTGTATTGTTAAAAAAAACTCAAATCTAGTGATGTATTAAGACCTTGTTTGTGTGTATCTTGTTAATGTGGTATATCTGCAAGAAGGTATAATCTG]
[+] EMBL AU091769 [ GCTAGAAAAACCATAATCTTCACGAATCACGCCATCTTCATGCAATGCGTCGTGCAAGAGGCTCTGGTGGGCGCTTCCTCAACACGAAGAAAGAGACCAATGGGAAAACCANTGGTGGAGGCAGGAAGGTGATGGACATCATCATCCCGCCTNTGTGCCCCGCCGCATCTCCCAGNTCGGAGCAGTGCAACCCAAGCAGCGTTTCCAGCCTGTCCGGGTCAGAGGTGTCGAGCATATATGAACACGAAGACATGGACCACTTCCATAGCTTTGATCATCTCCGGACACACTTCTTCACCCCGCTCCCGAGCCTCATGGATGTCGAGCACGGGGCTGGTAACCCCTTCAAGTGGACAGCAGCCTCTGATGGCTGCTGTGACCTCCTCAAAGCATGACTAGAGGGGGGATACACCGGGCAGCCGAAGCTGGCAAACATCAGCAGTTTCTGCTGGATACATTGCCCAGCTCCAGGTCAGGGATTGTCCCTGCTGGTATTGGCTGTCTGTAGGCAACTCATTCTTGGCTGATCGGTTCCGCTCATCGCCTACTTGTCCCGGAAACTCCAGCACCGGTTTCTGGGAT CTGCGGTGATCAGAACAACCCATCGCGTGTAAAAA ]
consensusID : consensus_6809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[AGGTGATGGACATCATCATCCCGCCTCTGTGCCCGNCCGCATCTCCCAGCTNGGAGCAGTGCAACCCAAGCAGCGTTTCCAGCCTGTCCGGGTTAGAGGTGTCGAGCATATATGAACACGAAGACATGGACCACTTCCATAGCTTTGATCATCTCCGGACACACTTCTTCACCCCGCTCCCGAGCCTCATGGATGTCGAGCACGGGGCTGGTAACCCCTTCAAGTGGACAGCAGCCTCTGATGGCTGCTGTGACCTCCTCAAAGCATGACTAGAGGGGGGATACACCGGGCAGCCGAAGCTGGCAAACATCAGCAGTTTCTGCTGGATACATTGCCCAGCTCCAGGTCAGGGATTGTCCCTGCTGGTATTGGCTGTCTGTAGGCAACTCATTCTTGGCTGATCGGTTCCGCTCATCGCCTACTTGTCCCGGAAACTCCAGCACCGGTTTCTGGGATCCTGCGGTGATCAGAACAACCCATCGCGTGTAAAAAAAAAAAAATCATCTATGCTATGCTGTTACTGCTTGCTACCATTATCTGAACTGCTACTACTAGGTAGCAAGCTTAATCTGGCAAGGTAAATAAAGTCTGGAACTTTGAACTGGTTCCAGTGGTGATGATTGTGGTGTGCTTGTATCCTGATAACTATTGTGAGTTTGAGACCTGGCTTTGTTGATCTAAAAAAAAAAAAAA]
[-] EMBL CA760855 [AGGTGATGGACATCATCATCCCGCCTCTGTGCCCGNCCGCATCTCCCAGCTNGGAGCAGTGCAACCCAAGCAGCGTTTCCAGCCTGTCCGGGTTAGAGGTGTCGAGCATATATGAACACGAAGACATGGACCACTTCCATAGCTTTGATCATCTCCGGACACACTTCTTCACCCCGCTCCCGAGCCTCATGGATGTCGAGCACGGGGCTGGTAACCCCTTCAAGTGGACAGCAGCCTCTGATGGCTGCTGTGACCTCCTCAAAGCATGACTAGAGGGGGGATACACCGGGCAGCCGAAGCTGGCAAACATCAGCAGTTTCTGCTGGATACATTGCCCAGCTCCAGGTCAGGGATTGTCCCTGCTGGTATTGGCTGTCTGTAGGCAACTCATTCTTGGCTGATCGGTTCCGCTCATCGCCTACTTGTCCCGGAAACTCCAGCACCGGTTTCTGGGATCCTGCGGTGATCAGAACAACCCATCGCGTGTAAAAAAAAAAAAATCATCTATGCTATGCTGTTACTGCTTGCTACCATTATCTGAACTGCTACTACTAGGTAGCAAGCTTAATCTGGCAAGGTAAATAAAGTCTGGAACTTTGAACTGGTTCCAGTGGTGATGATTGTGGTGTGCTTGTATCCTGATAACTATTGTGAGTTTGAGACCTGGCTTTGTTGATCTAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6809#0 TCTCACCTCTCGCGCTTCTTGTTGTCATCTTCCACCCCATCAGAAGGCTTCTGCTGCTGC 60
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 TGAAAGCCTGATGAAATTGGGTGATTAGGTGCTTAACATAATCCCAATCCTAGAAAAATA 120
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 CATTCGGAGTGGTTGCTGCTGAGCTCAACCAATCAAGCTTGTTGGGGAGGCAAGCAGTCA 180
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 CAATGATGAGCTTCAACAAGAGCCAAGAAGGATTTGGGCAGGTTGCTGCTGTGGCCACCC 240
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 TGGCCTCCAATGGAGGAGGCTCTCTACCATGGCTGCTGTACGGCGAGCCACTGGGGTAGG 300
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 GGAAGCCGGCCATGTCGCCGGAGGGCGTGGTGCCGAGAGCACAGACTNCTCTGGATCCTC 360
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 CTCAGGTTCCAGCCATGGACAGGGGTGTCCTGAAATTCTGAACTTCTCCATGGTTCCAGG 420
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 TAAAGGAGAAAAATGTTCTGAGCACTCAACTACTATTGCTCTGCAGTCACCATTTGCAGA 480
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 ATATAATGGCTGTTTTGAGCTGGGCCTTGGTCAATCTGTGGTTCCCTCTAATTATCCTTA 540
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 TGCTGACCAGCACTATGGCCTACTTTCTCCTTATGGAGTGAGACCAACGCCTAGCGGGCG 600
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 AATTCTTATTCCACCAAATATGCCAGCTGATGCACCAATTTATGTGAATGCAAAACAGTG 660
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 TTCAGCCATCATTCGACGTCGCCATGCTCGTGCCAAGGCAGAGAGGGAGAATAGGCTGGT 720
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 CAAAGCTAGAAAACCATATCTTCACGAATCACGCCATCTTCATGCAATGCGTCGTGCAAG 780
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 AGGCTCTGGTGGGCGCTTCCTCAACACGAAGAAAGAGACCAATGGGAAAACCACTGGTGG 840
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 AGGCAGGAAGGTGATGGACATCATCATCCCGCCTCTGTGCCCCGCCGCATCTCCCAGCTC 900
consensus_6809#1 --------AGGTGATGGACATCATCATCCCGCCTCTGTGCCCGNCCGCATCTCCCAGCTN 52
********************************** ***************
consensus_6809#0 GGAGCAGTGCAACCCAAGCAGCGTTTCCAGCCTGTCCGGGTCAGAGGTGTCGAGCATATA 960
consensus_6809#1 GGAGCAGTGCAACCCAAGCAGCGTTTCCAGCCTGTCCGGGTTAGAGGTGTCGAGCATATA 112
***************************************** ******************
consensus_6809#0 TGAACACGAAGACATGGACCACTTCCATAGCTTTGATCATCTCCGGACACACTTCTTCAC 1020
consensus_6809#1 TGAACACGAAGACATGGACCACTTCCATAGCTTTGATCATCTCCGGACACACTTCTTCAC 172
************************************************************
consensus_6809#0 CCCGCTCCCGAGCCTCATGGATGTCGAGCACGGGGCTGGTAACCCCTTCAAGTGGACAGC 1080
consensus_6809#1 CCCGCTCCCGAGCCTCATGGATGTCGAGCACGGGGCTGGTAACCCCTTCAAGTGGACAGC 232
************************************************************
consensus_6809#0 AGCCTCTGATGGCTGCTGTGACCTCCTCAAAGCATGACTAGAGGGGGGATACACCGGGCA 1140
consensus_6809#1 AGCCTCTGATGGCTGCTGTGACCTCCTCAAAGCATGACTAGAGGGGGGATACACCGGGCA 292
************************************************************
consensus_6809#0 GCCGAAGCTGGCAAACATCAGCAGTTTCTGCTGGATACATTGCCCAGCTCCAGGTCAGGG 1200
consensus_6809#1 GCCGAAGCTGGCAAACATCAGCAGTTTCTGCTGGATACATTGCCCAGCTCCAGGTCAGGG 352
************************************************************
consensus_6809#0 ATTGTCCCTGCTGGTATTGGCTGTCTGTAGGCAACTCATTCTTGGCTGATCGGTTCCGCT 1260
consensus_6809#1 ATTGTCCCTGCTGGTATTGGCTGTCTGTAGGCAACTCATTCTTGGCTGATCGGTTCCGCT 412
************************************************************
consensus_6809#0 CATCGCCTACTTGTCCCGGAAACTCCAGCACCGGTTTCTGGGATCCTGCGGTGATCAGAA 1320
consensus_6809#1 CATCGCCTACTTGTCCCGGAAACTCCAGCACCGGTTTCTGGGATCCTGCGGTGATCAGAA 472
************************************************************
consensus_6809#0 CAACCCATCGCGTGTAAAAAAAAAAAAAAATCATCTATGCTATGCTGTTACTGCTTGCTA 1380
consensus_6809#1 CAACCCATCGCGTGTAAAAAAAAAAAA--ATCATCTATGCTATGCTGTTACTGCTTGCTA 530
*************************** *******************************
consensus_6809#0 CCATTATCTGAACTGCTACTACTAGGTAGCAAGCTTAATCTGGCAAGGTAAATAAAGTCT 1440
consensus_6809#1 CCATTATCTGAACTGCTACTACTAGGTAGCAAGCTTAATCTGGCAAGGTAAATAAAGTCT 590
************************************************************
consensus_6809#0 GGAACTTTGAACTGGTTCCAGTGGTGATGATTGTGGTGTGCTTGTATCCTGATAACTATT 1500
consensus_6809#1 GGAACTTTGAACTGGTTCCAGTGGTGATGATTGTGGTGTGCTTGTATCCTGATAACTATT 650
************************************************************
consensus_6809#0 GTGAGTTTGAGACCTGGCTTTGTTGATCTACTGAACTACTACTGTAGCACTATGCTTGAA 1560
consensus_6809#1 GTGAGTTTGAGACCTGGCTTTGTTGATCTAAAAAAAAAAAAAA----------------- 693
****************************** ** * *
consensus_6809#0 GTTTGTGTGGGCTTGGTTTGCAGTTTGTATTGTTAAAAAAAACTCAAATCTAGTGATGTA 1620
consensus_6809#1 ------------------------------------------------------------
consensus_6809#0 TTAAGACCTTGTTTGTGTGTATCTTGTTAATGTGGTATATCTGCAAGAAGGTATAATCTG 1680
consensus_6809#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||