cluster # 6830

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Oryza sativa
cluster # 6830 cluster # 6830 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6830#0 length = 801 sequences # 3

consensus_6830#1 length = 313 sequences # 1

consensusID : consensus_6830#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 801
fasta sequence

                              [TCTTTTTTTTGACACAAAACATGTTGAATTCAGAATATCTGAAGAACATGCATGACAAGATTTTCGGCATTGCCGCAACTCATGATATGGTAGTATCAATCACCTGAAATAAACTCAGATTTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAACGAATTCACTGATTAAGCTAATTCGATTGAGATTTGCATCCGTGGATTGCTGTTTCACCAATCTGAACGAGCTAGCTGATGCAGTGATCCTGGTCCGGCGGCTATGGAAACCGTAGCTCCTGCGGAGGTGTCATTGCTGGTGTCCGCCGACGACGTGGACACCGGCGGGCCGTACGTCGCCACCGGCATCCTCGCCGGCAGGCTCGGCAGCGGCGCCTCGAACCGCAGCACGCTGACGGCCTGTCTGATGGACGGCCGCAGGCCGCGGTCGGGGTGCGCGCACCAGAGCCCGACGACCAGCACGCGCTCCATCTCCGCGCCGTCGAACTCGCCGTTCAGCCTCGCGTCGGCGGCGTCGAGGATGCCACCGCCCCCGGCGGCGGCGCCGTGCGTGTTCCACACCCACTGCGTCAGGTGGATCGCGTCATCGCCACCGTTGATGACCACCGCCGGCCGCCGGCCGCAGGCGACCTCGAGGAGGACGACGCCGAAGCTGTACACGTCGGACTCGACGCTCGCCCTCCCGGCGAGGAAGAAGCACTCCGCGTCGATGTACCCCATCGTGCCGGCGATGC]

[+] EMBL CB622759             [TCTTTTTTTTGACACAAAACATGTTGAATTCAGAATATCTGAAGAACATGCATGACAAGATTTTCGGCATTGCCGCAACTCATGATATGGTAGTATCAATCACCTGAAATAAACTCAGATTTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAACGAATTCACTGATTAAGCTAATTCGATTGAGATTTGCATCCGTGGATTGCTGTTTCACCAATCTGAACGAGCTAGCTGATGCAGTGATCCTGGTCCGGCGGCTATGGAAACCGTAGCTCCTGCGGAGGTGTCATTGCTGGTGTCCGCCGACGACGTGGACACCGGCGGGCCGTACGTCGCCACCGGCATCCTCGCCGGCAGGCTCGGCAGCGGCGCCTCGAACCGCAGCACGCTGACGGCCTGTCTGATGGACGGCCGCAGGCCGCGGTCGGGGTGCGCGCACCAGAGCCCGACGACCAGCACGCGCTCCATCTCCGCGCCGTCGAACTCGCCGTTCAGCCTCGCGTCGGCGGCGTCGAGGATGCCACCGCCCCCGGCGGCGGCGCCGTGCGTGTTCCACACCCACTGCGTCAGGTGGATCGCGTCATCGCCACCGTTGATGACCACCGCCGGCCGCCGGCCGCAGGCGACCTCGAGGAGGACGACGCCGAAGCTGTAC                                                                            ]
[+] EMBL CB617733             [                   CATGTTGAATTCAGAATATCTGAAGAACATGCATGACAAGATTTTCGGCATTGCCGCAACTCATGATATGGTAGTATCAATCACCTGAAATAAACTCAGATTTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAACGAATTCACTGATTAAGCTAATTCGATTGAGATTTGCATCCGTGGATTGCTGTTTCACCAATCTGAACGAGCTAGCTGATGCAGTGATCCTGGTCCGGCGGCTATGGAAACCGTAGCTCCTGCGGAGGTGTCATTGCTGGTGTCCGCCGACGACGTGGACACCGGCGGGCCGTACGTCGCCACCGGCATCCTCGCCGGCAGGCTCGGCAGCGGCGCCTCGAACCGCAGCACGCTGACGGCCTGTCTGATGGACGGCCGCAGGCCGCGGTCGGGGTGCGCGCACCAGAGCCCGACGACCAGCACGCGCTCCATCTCCGCGCCGTCGAACTCGCCGTTCAGCCTCGCGTCGGCGGCGTCGAGGATGCCACCGCCCCCGGCGGCGGCGCCGTGCGTGTTCCACACCCACTGCGTCAGGTGGATCGCGTCATCGCCACCGTTGATGACCACCGCCGGCCGCCGGCCGCAGGCGACCTCGAGGAGGACGACGCCGAAGCTGTACACGTCGGACTCGACGCTCGCCCTCCCGGCGAGGAAGAAGCACTCCGCGTCGATGTACCCCATCGTGCCGGCGATGC]
[-] EMBL BI811968             [                                                                                                         ttttTAAACTCAGATTTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAACGAATTCACTGATTAAGCTAATTCGATTGAGATTTGCATCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_6830#0
TCTTTTTTTTGACACAAAACATGTTGAATTCAGAATATCTGAAGAACATGCATGACAAGA
TTTTCGGCATTGCCGCAACTCATGATATGGTAGTATCAATCACCTGAAATAAACTCAGAT
TTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCA
TCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAACGAATTCACTGATT
AAGCTAATTCGATTGAGATTTGCATCCGTGGATTGCTGTTTCACCAATCTGAACGAGCTA
GCTGATGCAGTGATCCTGGTCCGGCGGCTATGGAAACCGTAGCTCCTGCGGAGGTGTCAT
TGCTGGTGTCCGCCGACGACGTGGACACCGGCGGGCCGTACGTCGCCACCGGCATCCTCG
CCGGCAGGCTCGGCAGCGGCGCCTCGAACCGCAGCACGCTGACGGCCTGTCTGATGGACG
GCCGCAGGCCGCGGTCGGGGTGCGCGCACCAGAGCCCGACGACCAGCACGCGCTCCATCT
CCGCGCCGTCGAACTCGCCGTTCAGCCTCGCGTCGGCGGCGTCGAGGATGCCACCGCCCC
CGGCGGCGGCGCCGTGCGTGTTCCACACCCACTGCGTCAGGTGGATCGCGTCATCGCCAC
CGTTGATGACCACCGCCGGCCGCCGGCCGCAGGCGACCTCGAGGAGGACGACGCCGAAGC
TGTACACGTCGGACTCGACGCTCGCCCTCCCGGCGAGGAAGAAGCACTCCGCGTCGATGT
ACCCCATCGTGCCGGCGATGC

consensusID : consensus_6830#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 313
fasta sequence

                              [TTTTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAAGCGAATTCACGTGGATTAAGCTAATTCGATTGAGATTTGCATCCGGGGGATTGGCTGTTTCACCAATCTGAAGCGAGCATAGNCGTGATGGCAGTGAATCCGTGGTCCGGCGGCTAGTGGAAACCGTAGGCTCCGTGGCGGGAGGGTGTCATTGCTGGGTGTCACGGCCGGAACGACGGGTGGGACACCGGGCGGGCCGTACGGTCGGC]

[-] EMBL BQ909247             [TTTTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAAGCGAATTCACGTGGATTAAGCTAATTCGATTGAGATTTGCATCCGGGGGATTGGCTGTTTCACCAATCTGAAGCGAGCATAGNCGTGATGGCAGTGAATCCGTGGTCCGGCGGCTAGTGGAAACCGTAGGCTCCGTGGCGGGAGGGTGTCATTGCTGGGTGTCACGGCCGGAACGACGGGTGGGACACCGGGCGGGCCGTACGGTCGGC]




>consensus_6830#1
TTTTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCATC
GGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAAGCGAATTCACGTGGAT
TAAGCTAATTCGATTGAGATTTGCATCCGGGGGATTGGCTGTTTCACCAATCTGAAGCGA
GCATAGNCGTGATGGCAGTGAATCCGTGGTCCGGCGGCTAGTGGAAACCGTAGGCTCCGT
GGCGGGAGGGTGTCATTGCTGGGTGTCACGGCCGGAACGACGGGTGGGACACCGGGCGGG
CCGTACGGTCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6830#0      TCTTTTTTTTGACACAAAACATGTTGAATTCAGAATATCTGAAGAACATGCATGACAAGA 60
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      TTTTCGGCATTGCCGCAACTCATGATATGGTAGTATCAATCACCTGAAATAAACTCAGAT 120
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      TTCAGTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCA 180
consensus_6830#1      --TTTTGTCGTTCTATTCAGACGTTTTTATCCAAGCATTCCCTCGAGTTCAAATTTCGCA 58
                           *******************************************************

consensus_6830#0      TCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAA-CGAATTCACT--G 237
consensus_6830#1      TCGGCCAAGAACGGGCACCAATTCTGCTGCGTCGCTAATCACTCAAGCGAATTCACGTGG 118
                      ********************************************** *********   *

consensus_6830#0      ATTAAGCTAATTCGATTGAGATTTGCATCCGTGGATT--GCTGTTTCACCAATCTGAA-C 294
consensus_6830#1      ATTAAGCTAATTCGATTGAGATTTGCATCCGGGGGATTGGCTGTTTCACCAATCTGAAGC 178
                      ******************************* **  *  ******************* *

consensus_6830#0      GAGC-TAGC--TGATG-CAGTGATCC--TGGTCCGGCGGCTA-TGGAAACCGTAGCTCCT 347
consensus_6830#1      GAGCATAGNCGTGATGGCAGTGAATCCGTGGTCCGGCGGCTAGTGGAAACCGTAGGCTCC 238
                      **** ***   ***** ******  *  ************** ************   * 

consensus_6830#0      GCGG-----AGGTGTCATTGCTGGTGTCCGCCGACGACGTGGACACCGGCGGGCCGTACG 402
consensus_6830#1      GTGGCGGGAGGGTGTCATTGCTGGGTGTCACGGCCGG-------AACGACGGGTGGGACA 291
                      * **      **************    * * * **        * ** ****  * ** 

consensus_6830#0      TCGCCACCGGCATCCTCGCCGGCAGGCTCGGCAGCGGCGCCTCGAACCGCAGCACGCTGA 462
consensus_6830#1      CCGG-GCGGGCCGTACGGTCGGC------------------------------------- 313
                       **   * ***      * ****                                     

consensus_6830#0      CGGCCTGTCTGATGGACGGCCGCAGGCCGCGGTCGGGGTGCGCGCACCAGAGCCCGACGA 522
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      CCAGCACGCGCTCCATCTCCGCGCCGTCGAACTCGCCGTTCAGCCTCGCGTCGGCGGCGT 582
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      CGAGGATGCCACCGCCCCCGGCGGCGGCGCCGTGCGTGTTCCACACCCACTGCGTCAGGT 642
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      GGATCGCGTCATCGCCACCGTTGATGACCACCGCCGGCCGCCGGCCGCAGGCGACCTCGA 702
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      GGAGGACGACGCCGAAGCTGTACACGTCGGACTCGACGCTCGCCCTCCCGGCGAGGAAGA 762
consensus_6830#1      ------------------------------------------------------------
                                                                                  

consensus_6830#0      AGCACTCCGCGTCGATGTACCCCATCGTGCCGGCGATGC 801
consensus_6830#1      ---------------------------------------