These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 825 fasta sequence [TTTTTTTTTTTTTTGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATCAATGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTCCAACTCTTCCCTCTTCTTCCTCAACTCCTCCAAATACTCTTTATGCCCCTCATCCATGATTGCCACAAACCTCTCCTTCAGCTCAATCATTGGATCCTTATCAACAAGCTCGCCATTCTCATCATATGCTTCCCTCAACACCGCCGTCTTGATCCCACCCTTCAACGACACATAGAATATCCCCGGATGTCTCGTGAACGCATTAGCAAACGCATTTGACAGCCTAAACTCATCACAGAACTTCCCTATAATTGGTACAGCCATCCTCCGCTCTACAGACAAGGATAAAACCTCATGTAAAACACCAATCAACCTTTTCTCTGCTTCCGGAGACGCCGGGTGAAGCCCAGACGTATCGGCGTAGGGCGATACATATGGCAACTCAAGCCAATCCCTCACCCACTCCCTCATCTCCTTCTTGAGATAGAATCCCCTCGGCAATTTAACCGTAAAATTCGGCCTCGGCCGAATGCCAACC] [+] EMBL CA759911 [TTTTTTTTTTTTTTGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATCAATGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTCCAACTCTTCCCTCTTCTTCCTCAACTCCTCCAAATACTCTTTATGCCCCTCATCCATGATTGCCACAAACCTCTCCTTCAGCTCAATCATTGGATCCTTATCAACAAGCTCGCCATTCTCATCATATGCTTCCCTCAACACCGCCGTCTTGATCCCACCCTTCAACGACACATAGAATATCCCCGGATGTCTCGTGAACGCATTAGCAAACGCATTTGACAGCCTAAACTCATCACAGAACTTCCCTATAATTGGTACAGCCATCCTCCGCTCTACAGACAAGGATAAAACCTCATGTAAAACACCAATCAACCTTTTCTCTGCTTCCGGAGACGCCGGGTGAA ] [-] EMBL AU030397 [ TCTCGTGAACGCATTAGCAAACGNA TTGACAGCCTAAACTCATCACAGAACTTCCCTATAATTGGTACAGCCATCCTCCGCTCTACAGACAAGGATAAAACCTCATGTAAAACACCAATCAACCTCTTCTCTGCTTCCGGTGACGCCGGGTGAAGCCCAGACGTATCGGCGTAGGGCGATACATATGGCAACTCAAGCCAATCCCTCACCCACTCCCTCATCTCCTTCTTGAGATAGAATCCCCTCGGCAATTTAACCGTAAAATTCGGCCTCGGCCGAATGCCAACC] consensusID : consensus_6834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [AGATAGCACAAACAAATATTTGGTTCACCTGTCTAAAGCATGACATGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTGACAAAAACAAAGCCATCATTTAAAGAATTAATCGAAAAGAAAATGAGTTAAGTCATAAATGAATAAAGGCAATCTTGCCATAAAACAGTATCAACGGCCACAACATCATAAAACCTACATTTCAGCATAATTTCAGAAACAGAGTTGTTGGACATCAACCAGTCATCTTATTTATTTGCAGAAAGTTGATCAAACTAAGAATTGAATGAATCATCAATTTACCTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATCAGTGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTC] [-] EMBL CF304585 [AGATAGCACAAACAAATATTTGGTTCACCTGTCTAAAGCATGACATGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTGACAAAAACAAAGCCATCATTTAAAGAATTAATCGAAAAGAAAATGAGTTAAGTCATAAATGAATAAAGGCAATCTTGCCATAAAACAGTATCAACGGCCACAACATCATAAAACCTACATTTCAGCATAATTTCAGAAACAGAGTTGTTGGACATCAACCAGTCATCTTATTTATTTGCAGAAAGTTGATCAAACTAAGAATTGAATGAATCATCAATTTACCTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATCAGTGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTC] consensusID : consensus_6834#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 266 fasta sequence [TTTTTTTAAAGCATGACATGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATNCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACGGCTCCCCAGGTCATACNAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCNGAC] [-] EMBL AU030398 [TTTTTTTAAAGCATGACATGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATNCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACGGCTCCCCAGGTCATACNAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCNGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6834#0 ---------------------------TTTTTTTT-----TTTTTTGATGCAAACATGTT 28 consensus_6834#2 ---------------------------TTTTTTTAAAGCATGACATGATGCAAACATGTT 33 consensus_6834#1 AGATAGCACAAACAAATATTTGGTTCACCTGTCTAAAGCATGACATGATGCAAACATGTT 60 * * * * *************** consensus_6834#0 TAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGT 88 consensus_6834#2 TAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATNCTTACAAAGAATATCCTCAAGT 93 consensus_6834#1 TAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGT 120 ************************************* ********************** consensus_6834#0 CTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGAT 148 consensus_6834#2 CTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGAT 153 consensus_6834#1 CTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGAT 180 ************************************************************ consensus_6834#0 CGAGTCAACT--TGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAAT 206 consensus_6834#2 CGAGTCAACT--TGGCCACGGCTCCCCAGGTCATACNAACCATAGAAGCGCAACAGAAAT 211 consensus_6834#1 CGAGTCAACTGACAAAAACAAAGCCATCATTTAAAGAATTAATCGAAAAG-AAAATGAGT 239 ********** ** ** * * * * ** *** * ** * * * consensus_6834#0 CATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATC 266 consensus_6834#2 CATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCNGAC----- 266 consensus_6834#1 TAAGT-CATAAATGAATAAAGGCAATCTTGCCATAAAACAGTATCAACGGCCACAACATC 298 * * ** ** * * *** * ** ** *** * * consensus_6834#0 AATGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGC 326 consensus_6834#2 ------------------------------------------------------------ consensus_6834#1 ATAAAACCTACATTTCAGCATAATTTCAGAAACAG----AGTTGTTGGACATCAACCAGT 354 consensus_6834#0 CTCCTGCAGTCTCTGTTTCTCCAACTCTTCCCTCTTCTTCCTCAACTCCTCCAAATACTC 386 consensus_6834#2 ------------------------------------------------------------ consensus_6834#1 CATCT----TATTTATTTGCAGAAAG-----------TTGATCAAA----CTAAGAATTG 395 consensus_6834#0 TTTATGCCCCTCATCCATGATTGCCACAAACCTCTCCTTCAGCTCAATCATTGGATCCTT 446 consensus_6834#2 ------------------------------------------------------------ consensus_6834#1 AATGAATCATCAATTTACCTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCA 455 consensus_6834#0 ATCAA---CAAGCTCGCCATTCTCATCATATG-CTTCCCTCAACACCGCCGTCTTGATCC 502 consensus_6834#2 ------------------------------------------------------------ consensus_6834#1 ACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCT 515 consensus_6834#0 CACCCTTCAACGACACATAGAATATCCCCGGATGTCTCGTGAACGCATTAGCAAACGCAT 562 consensus_6834#2 ------------------------------------------------------------ consensus_6834#1 GACTCATCAGTGCCTTCC------TCCTCCATCTCATCCTCAATACCTGTGCCAAC---T 566 consensus_6834#0 TTGACAGCC-TAAACTCATCACAGAACTTCCCTATAATTGGTACAGCCATCCTCCGCTCT 621 consensus_6834#2 ------------------------------------------------------------ consensus_6834#1 TTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTC---------------------- 604 consensus_6834#0 ACAGACAAGGATAAAACCTCATGTAAAACACCAATCAACCTTTTCTCTGCTTCCGGAGAC 681 consensus_6834#2 ------------------------------------------------------------ consensus_6834#1 ------------------------------------------------------------ consensus_6834#0 GCCGGGTGAAGCCCAGACGTATCGGCGTAGGGCGATACATATGGCAACTCAAGCCAATCC 741 consensus_6834#2 ------------------------------------------------------------ consensus_6834#1 ------------------------------------------------------------ consensus_6834#0 CTCACCCACTCCCTCATCTCCTTCTTGAGATAGAATCCCCTCGGCAATTTAACCGTAAAA 801 consensus_6834#2 ------------------------------------------------------------ consensus_6834#1 ------------------------------------------------------------ consensus_6834#0 TTCGGCCTCGGCCGAATGCCAACC 825 consensus_6834#2 ------------------------ consensus_6834#1 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||