cluster # 6834

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Oryza sativa
cluster # 6834 cluster # 6834 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6834#0 length = 825 sequences # 2

consensus_6834#1 length = 604 sequences # 1
consensus_6834#2 length = 266 sequences # 1

consensusID : consensus_6834#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 825
fasta sequence

                              [TTTTTTTTTTTTTTGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATCAATGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTCCAACTCTTCCCTCTTCTTCCTCAACTCCTCCAAATACTCTTTATGCCCCTCATCCATGATTGCCACAAACCTCTCCTTCAGCTCAATCATTGGATCCTTATCAACAAGCTCGCCATTCTCATCATATGCTTCCCTCAACACCGCCGTCTTGATCCCACCCTTCAACGACACATAGAATATCCCCGGATGTCTCGTGAACGCATTAGCAAACGCATTTGACAGCCTAAACTCATCACAGAACTTCCCTATAATTGGTACAGCCATCCTCCGCTCTACAGACAAGGATAAAACCTCATGTAAAACACCAATCAACCTTTTCTCTGCTTCCGGAGACGCCGGGTGAAGCCCAGACGTATCGGCGTAGGGCGATACATATGGCAACTCAAGCCAATCCCTCACCCACTCCCTCATCTCCTTCTTGAGATAGAATCCCCTCGGCAATTTAACCGTAAAATTCGGCCTCGGCCGAATGCCAACC]

[+] EMBL CA759911             [TTTTTTTTTTTTTTGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATCAATGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTCCAACTCTTCCCTCTTCTTCCTCAACTCCTCCAAATACTCTTTATGCCCCTCATCCATGATTGCCACAAACCTCTCCTTCAGCTCAATCATTGGATCCTTATCAACAAGCTCGCCATTCTCATCATATGCTTCCCTCAACACCGCCGTCTTGATCCCACCCTTCAACGACACATAGAATATCCCCGGATGTCTCGTGAACGCATTAGCAAACGCATTTGACAGCCTAAACTCATCACAGAACTTCCCTATAATTGGTACAGCCATCCTCCGCTCTACAGACAAGGATAAAACCTCATGTAAAACACCAATCAACCTTTTCTCTGCTTCCGGAGACGCCGGGTGAA                                                                                                                                      ]
[-] EMBL AU030397             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCTCGTGAACGCATTAGCAAACGNA TTGACAGCCTAAACTCATCACAGAACTTCCCTATAATTGGTACAGCCATCCTCCGCTCTACAGACAAGGATAAAACCTCATGTAAAACACCAATCAACCTCTTCTCTGCTTCCGGTGACGCCGGGTGAAGCCCAGACGTATCGGCGTAGGGCGATACATATGGCAACTCAAGCCAATCCCTCACCCACTCCCTCATCTCCTTCTTGAGATAGAATCCCCTCGGCAATTTAACCGTAAAATTCGGCCTCGGCCGAATGCCAACC]




>consensus_6834#0
TTTTTTTTTTTTTTGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGT
GATATGCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAA
TGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACTGCTCCCCAGGTCAT
ACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCT
GAATCATCATCTTCATCTGACTCATCAATGCCTTCCTCCTCCATCTCATCCTCAATACCT
GTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTCCAACTCTTCCCTC
TTCTTCCTCAACTCCTCCAAATACTCTTTATGCCCCTCATCCATGATTGCCACAAACCTC
TCCTTCAGCTCAATCATTGGATCCTTATCAACAAGCTCGCCATTCTCATCATATGCTTCC
CTCAACACCGCCGTCTTGATCCCACCCTTCAACGACACATAGAATATCCCCGGATGTCTC
GTGAACGCATTAGCAAACGCATTTGACAGCCTAAACTCATCACAGAACTTCCCTATAATT
GGTACAGCCATCCTCCGCTCTACAGACAAGGATAAAACCTCATGTAAAACACCAATCAAC
CTTTTCTCTGCTTCCGGAGACGCCGGGTGAAGCCCAGACGTATCGGCGTAGGGCGATACA
TATGGCAACTCAAGCCAATCCCTCACCCACTCCCTCATCTCCTTCTTGAGATAGAATCCC
CTCGGCAATTTAACCGTAAAATTCGGCCTCGGCCGAATGCCAACC

consensusID : consensus_6834#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence

                              [AGATAGCACAAACAAATATTTGGTTCACCTGTCTAAAGCATGACATGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTGACAAAAACAAAGCCATCATTTAAAGAATTAATCGAAAAGAAAATGAGTTAAGTCATAAATGAATAAAGGCAATCTTGCCATAAAACAGTATCAACGGCCACAACATCATAAAACCTACATTTCAGCATAATTTCAGAAACAGAGTTGTTGGACATCAACCAGTCATCTTATTTATTTGCAGAAAGTTGATCAAACTAAGAATTGAATGAATCATCAATTTACCTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATCAGTGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTC]

[-] EMBL CF304585             [AGATAGCACAAACAAATATTTGGTTCACCTGTCTAAAGCATGACATGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTGACAAAAACAAAGCCATCATTTAAAGAATTAATCGAAAAGAAAATGAGTTAAGTCATAAATGAATAAAGGCAATCTTGCCATAAAACAGTATCAACGGCCACAACATCATAAAACCTACATTTCAGCATAATTTCAGAAACAGAGTTGTTGGACATCAACCAGTCATCTTATTTATTTGCAGAAAGTTGATCAAACTAAGAATTGAATGAATCATCAATTTACCTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATCAGTGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTC]




>consensus_6834#1
AGATAGCACAAACAAATATTTGGTTCACCTGTCTAAAGCATGACATGATGCAAACATGTT
TAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGT
CTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGAT
CGAGTCAACTGACAAAAACAAAGCCATCATTTAAAGAATTAATCGAAAAGAAAATGAGTT
AAGTCATAAATGAATAAAGGCAATCTTGCCATAAAACAGTATCAACGGCCACAACATCAT
AAAACCTACATTTCAGCATAATTTCAGAAACAGAGTTGTTGGACATCAACCAGTCATCTT
ATTTATTTGCAGAAAGTTGATCAAACTAAGAATTGAATGAATCATCAATTTACCTTGGCC
ACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACA
GGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATCAGTGCCTTCCTCCTCCA
TCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTT
TCTC

consensusID : consensus_6834#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 266
fasta sequence

                              [TTTTTTTAAAGCATGACATGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATNCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACGGCTCCCCAGGTCATACNAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCNGAC]

[-] EMBL AU030398             [TTTTTTTAAAGCATGACATGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATNCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACGGCTCCCCAGGTCATACNAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCNGAC]




>consensus_6834#2
TTTTTTTAAAGCATGACATGATGCAAACATGTTTAGATAGTTCAATGAAAGGAAAGGTTT
TGAGTGATATNCTTACAAAGAATATCCTCAAGTCTTGACAGACTGTTTAGAGGTTCCAAA
ACAAATGCTGCGATTCCATTTCCAACCCCAGATCGAGTCAACTTGGCCACGGCTCCCCAG
GTCATACNAACCATAGAAGCGCAACAGAAATCATATGCACAACTCACAGGGCCTCTCCTT
CTTCTGAATCATCATCTTCATCNGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6834#0      ---------------------------TTTTTTTT-----TTTTTTGATGCAAACATGTT 28
consensus_6834#2      ---------------------------TTTTTTTAAAGCATGACATGATGCAAACATGTT 33
consensus_6834#1      AGATAGCACAAACAAATATTTGGTTCACCTGTCTAAAGCATGACATGATGCAAACATGTT 60
                                                   * * *      *    ***************

consensus_6834#0      TAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGT 88
consensus_6834#2      TAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATNCTTACAAAGAATATCCTCAAGT 93
consensus_6834#1      TAGATAGTTCAATGAAAGGAAAGGTTTTGAGTGATATGCTTACAAAGAATATCCTCAAGT 120
                      ************************************* **********************

consensus_6834#0      CTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGAT 148
consensus_6834#2      CTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGAT 153
consensus_6834#1      CTTGACAGACTGTTTAGAGGTTCCAAAACAAATGCTGCGATTCCATTTCCAACCCCAGAT 180
                      ************************************************************

consensus_6834#0      CGAGTCAACT--TGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCAACAGAAAT 206
consensus_6834#2      CGAGTCAACT--TGGCCACGGCTCCCCAGGTCATACNAACCATAGAAGCGCAACAGAAAT 211
consensus_6834#1      CGAGTCAACTGACAAAAACAAAGCCATCATTTAAAGAATTAATCGAAAAG-AAAATGAGT 239
                      **********       **    **     * * *  *   ** ***  * ** *  * *

consensus_6834#0      CATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCTGACTCATC 266
consensus_6834#2      CATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCNGAC----- 266
consensus_6834#1      TAAGT-CATAAATGAATAAAGGCAATCTTGCCATAAAACAGTATCAACGGCCACAACATC 298
                       *  * ** ** * *           ***    * ** **  ***  *  *         

consensus_6834#0      AATGCCTTCCTCCTCCATCTCATCCTCAATACCTGTGCCAACTTTGGCACCCCTATAAGC 326
consensus_6834#2      ------------------------------------------------------------
consensus_6834#1      ATAAAACCTACATTTCAGCATAATTTCAGAAACAG----AGTTGTTGGACATCAACCAGT 354
                                                                                  

consensus_6834#0      CTCCTGCAGTCTCTGTTTCTCCAACTCTTCCCTCTTCTTCCTCAACTCCTCCAAATACTC 386
consensus_6834#2      ------------------------------------------------------------
consensus_6834#1      CATCT----TATTTATTTGCAGAAAG-----------TTGATCAAA----CTAAGAATTG 395
                                                                                  

consensus_6834#0      TTTATGCCCCTCATCCATGATTGCCACAAACCTCTCCTTCAGCTCAATCATTGGATCCTT 446
consensus_6834#2      ------------------------------------------------------------
consensus_6834#1      AATGAATCATCAATTTACCTTGGCCACTGCTCCCCAGGTCATACTAACCATAGAAGCGCA 455
                                                                                  

consensus_6834#0      ATCAA---CAAGCTCGCCATTCTCATCATATG-CTTCCCTCAACACCGCCGTCTTGATCC 502
consensus_6834#2      ------------------------------------------------------------
consensus_6834#1      ACAGAAATCATATGCACAACTCACAGGGCCTCTCCTTCTTCTGAATCATCATCTTCATCT 515
                                                                                  

consensus_6834#0      CACCCTTCAACGACACATAGAATATCCCCGGATGTCTCGTGAACGCATTAGCAAACGCAT 562
consensus_6834#2      ------------------------------------------------------------
consensus_6834#1      GACTCATCAGTGCCTTCC------TCCTCCATCTCATCCTCAATACCTGTGCCAAC---T 566
                                                                                  

consensus_6834#0      TTGACAGCC-TAAACTCATCACAGAACTTCCCTATAATTGGTACAGCCATCCTCCGCTCT 621
consensus_6834#2      ------------------------------------------------------------
consensus_6834#1      TTGGCACCCCTATAAGCCTCCTGCAGTCTCTGTTTCTC---------------------- 604
                                                                                  

consensus_6834#0      ACAGACAAGGATAAAACCTCATGTAAAACACCAATCAACCTTTTCTCTGCTTCCGGAGAC 681
consensus_6834#2      ------------------------------------------------------------
consensus_6834#1      ------------------------------------------------------------
                                                                                  

consensus_6834#0      GCCGGGTGAAGCCCAGACGTATCGGCGTAGGGCGATACATATGGCAACTCAAGCCAATCC 741
consensus_6834#2      ------------------------------------------------------------
consensus_6834#1      ------------------------------------------------------------
                                                                                  

consensus_6834#0      CTCACCCACTCCCTCATCTCCTTCTTGAGATAGAATCCCCTCGGCAATTTAACCGTAAAA 801
consensus_6834#2      ------------------------------------------------------------
consensus_6834#1      ------------------------------------------------------------
                                                                                  

consensus_6834#0      TTCGGCCTCGGCCGAATGCCAACC 825
consensus_6834#2      ------------------------
consensus_6834#1      ------------------------