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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1963 fasta sequence
[TGCAGTGACCTCTTCTCACCTCCCACCTCCTCTCTCTCTCTCCCCTTTCCTTTACCCGCCGCCGCCGGCGTCCAAGAAGCGCGGGGGTTGGTAGGGCGGTGACCGGCGGCGAGGTCAAAGGGATTGCTTGCTGCTAGTGCTGGGCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAGAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGTCGGCGTCGGCTTCCCGGCGACCTCCTCG-AGCTCGCCGTCGCCGCCGGACGCTCCCGGAGACCCGTATGCCAAGTATGTCTCGCCGGAGATCGAGCACCATGCTCTGCCCGGTCAAAGTGTGGAGGTGGAGCTAATGGAGAAGGGGAAGAAGAACAAGAAGAAGACGAATAAAGCATTCAAGCTCAAGATCAAGGTGGGCAATCCCCACCTGAAGAGGCTGATCAGCGGGGGGATCGCCGGCGCGGTGTCGAGGACGGCCGTCGCGCCATTGGAGACGATCAGGACGCATTTGATGGTGGGGAGTAATGGGAATTCGACCGCGGAGGTGTTCCAGTCCATCATGAAGCATGAAGGGTGGACTGGGTTGTTCCGCGGTAACTTTGTTAATGTCATTCGAGTCGCCCCGAGCAAAGCAATTGAGCTCTTCGCTTTTGATACAGCTAACAAGTTCTTGACCCCCAAATCTGGGGAACAAAAGAAGGTCCCACTCCCTCCTTCACTAGTGGCTGGGGCATTTGCTGGTGTCAGTTCAACCCTCTGTACTTACCCTCTGGAATTAATTAAGACACGATTAACCATACAGAGAGGTGTATATGATAACTTTCTCCACGCTCTTGTCAAAATTGTCCGTGAAGAAGGCCCTACTGAGCTGTACCGAGGTTTAACGCCAAGTTTAATTGGAGTTGTGCCATATGCGGCGACCAACTACTTTGCTTACGACACCCTTAAGAAGGCCTACAAGAAGATGTTCAAGACGAATGAAATCGGCAACGTTCCTACCCTGCTCATTGGGTCGGCCGCAGGAGCTATCTCAAGCACAGCTACTTTCCCCCTCGAGGTTGCACGCAAGCACATGCAAGTTGGCGCAGTCGGTGGCAGGAAGGTCTACAAGAACATGCTTCATGCTCTCCTGAGCATTCTGGAGGATGAAGGGGTTGGAGGGCTTTACAGGGGTCTGGGGCCAAGTTGCATGAAGTTGGTGCCAGCCGCCGGTATTTCGTTTATGTGCTATGAGGCTTGCAAGAAGGTATTGACAGAGGAAGAGGATGACTGAATAGTGTGTCCTTACACTCTTCAGAGCGCAGTTTTGCAACTTTTTTGACTGGAGGCATCTTTTGGGCTTGATTTGGAATCAAATCATGCTGGAATCGGATGAAACTCGTGTAGTTTCTTAAGAATTTTTACCCCAACTCTGTGCTGTCAGCTTGGCCTGATAAAACCTGCCTCTTTCCCCAGTTTTGCTTCAGGATATCATATGCAGAGAACATGTCCAATAACTGATTTCTGCTGAGTTTATGAAGTGGTTGAAACGCAAATGGGCAGTCATAATTCCCAGGTGGTGAAACAACTACGAGACTCTGTAATCTGTGTGCAGCTTTGCAAGTGCATGAAAGGTTCATTTGATCAAAAA]
[+] EMBL AK103471 [TGCAGTGACCTCTTCTCACCTCCCACCTCCTCTCTCTCTCTCCCCTTTCCTTTACCCGCCGCCGCCGGCGTCCAAGAAGCGCGGGGGTTGGTAGGGCGGTGACCGGCGGCGAGGTCAAAGGGATTGCTTGCTGCTAGTGCTGGGCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAGAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGTCGGCGTCGGCTTCCCGGCGACCTCCTCG AGCTCGCCGTCGCCGCCGGACGCTCCCGGAGACCCGTATGCCAAGTATGTCTCGCCGGAGATCGAGCACCATGCTCTGCCCGGTCAAAGTGTGGAGGTGGAGCTAATGGAGAAGGGGAAGAAGAACAAGAAGAAGACGAATAAAGCATTCAAGCTCAAGATCAAGGTGGGCAATCCCCACCTGAAGAGGCTGATCAGCGGGGGGATCGCCGGCGCGGTGTCGAGGACGGCCGTCGCGCCATTGGAGACGATCAGGACGCATTTGATGGTGGGGAGTAATGGGAATTCGACCGCGGAGGTGTTCCAGTCCATCATGAAGCATGAAGGGTGGACTGGGTTGTTCCGCGGTAACTTTGTTAATGTCATTCGAGTCGCCCCGAGCAAAGCAATTGAGCTCTTCGCTTTTGATACAGCTAACAAGTTCTTGACCCCCAAATCTGGGGAACAAAAGAAGGTCCCACTCCCTCCTTCACTAGTGGCTGGGGCATTTGCTGGTGTCAGTTCAACCCTCTGTACTTACCCTCTGGAATTAATTAAGACACGATTAACCATACAGAGAGGTGTATATGATAACTTTCTCCACGCTCTTGTCAAAATTGTCCGTGAAGAAGGCCCTACTGAGCTGTACCGAGGTTTAACGCCAAGTTTAATTGGAGTTGTGCCATATGCGGCGACCAACTACTTTGCTTACGACACCCTTAAGAAGGCCTACAAGAAGATGTTCAAGACGAATGAAATCGGCAACGTTCCTACCCTGCTCATTGGGTCGGCCGCAGGAGCTATCTCAAGCACAGCTACTTTCCCCCTCGAGGTTGCACGCAAGCACATGCAAGTTGGCGCAGTCGGTGGCAGGAAGGTCTACAAGAACATGCTTCATGCTCTCCTGAGCATTCTGGAGGATGAAGGGGTTGGAGGGCTTTACAGGGGTCTGGGGCCAAGTTGCATGAAGTTGGTGCCAGCCGCCGGTATTTCGTTTATGTGCTATGAGGCTTGCAAGAAGGTATTGACAGAGGAAGAGGATGACTGAATAGTGTGTCCTTACACTCTTCAGAGCGCAGTTTTGCAACTTTTTTGACTGGAGGCATCTTTTGGGCTTGATTTGGAATCAAATCATGCTGGAATCGGATGAAACTCGTGTAGTTTCTTAAGAATTTTTACCCCAACTCTGTGCTGTCAGCTTGGCCTGATAAAACCTGCCTCTTTCCCCAGTTTTGCTTCAGGATATCATATGCAGAGAACATGTCCAATAACTGATTTCTGCTGAGTTTATGAAGTGGTTGAAACGCAAATGGGCAGTCATAATTCCCAGGTGGTGAAACAACTACGAGACTCTGTAATCTGTGTGCAGCTTTGCAAGTGCATGAAAGGTT ]
[+] EMBL AU095113 [ AATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAGAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCANGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGTCGGCGTCGGCTTCCCGGCGACNTCCTCGAAGCTCGCCGTCGCCGNCGGAAGCT CCGGAAAACCGT ]
[+] EMBL AU030619 [ TACCCTGCTCATTGGGTCNCCCNCAGNAGCTNTCTCAAGCACAGCTACTTTCCCCCTCNAGGTTGCACGCAAGCACATGCAAGTTGGCGCAGTCGNTGGCAGGAAGGTCTACAAGAACATGCTTCANGCTCTCCTGAGCATTCTGGAGGATGAAGGGNTTGGAGGGCTTTACAGGGGTCTGGGGCCAAGTTGCATGAANTTGGTGCCAGCCGCCNNTATTTCGTTTATNTGCTATGAGGCTTGCAAGAAGGTATTGACAGAGGAAGAGGATNACTGAATAGTGTGTCCTTACACTCTTCAGAGCGCAGTTTTGCAAC TTTTTGACTGGAGGCATCTTTTGGGCTTGATTTGGAATCAAATCATGCTGGAATCGGATGAAACTCGTGTAGTTTCTTAAGAATTTTTACCCCAACTCTGTGTTGTCAGCTTGGCCTGATAAAACCTGCCTCTTTCCCCAGTTTTGCTTCAGGATATCATATGCAGAGAACATGTCCAATAACTGATTTCTGCTGAGTTTATGAAGTGGTTGAAACGCAAATGGGCAGTCATAATTCCCAGGTGGTGAAACAACTACGAGACTCTGTAATCTGTGTGCAGCTTTGCAAGTGCATGAAAGGTTCATTTGATCAAAAA]
consensusID : consensus_6841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[TCATCTTTCGTTTATTTCCTTCCCTTTTTTTTTCTTTCCCTCTTATTTATTTCTTTCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAAAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGT]
[+] EMBL CB641198 [TCATCTTTCGTTTATTTCCTTCCCTTTTTTTTTCTTTCCCTCTTATTTATTTCTTTCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAAAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6841#0 TGCAGTGACCTCTTCTCACCTCCCACCTCCTCTCTCTCTCTCCCCTTTCCTTTACCCGCC 60
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GCCGCCGGCGTCCAAGAAGCGCGGGGGTTGGTAGGGCGGTGACCGGCGGCGAGGTCAAAG 120
consensus_6841#1 ----------------------------TCATCTTTCGTTTATTTCCTTCCCTTTTTTTT 32
* * ** * * * * *
consensus_6841#0 GGATTGCTTGCTGCTAGTGCTGGGCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATC 180
consensus_6841#1 TCTTTCCCTCTTATTTATTTCTTTCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATC 92
** * * * * * ************************************
consensus_6841#0 GCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCA 240
consensus_6841#1 GCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCA 152
************************************************************
consensus_6841#0 CGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTT-CTTTTTTGGGGCCAATTAGTGAT 299
consensus_6841#1 CGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGAT 212
************************************ ***********************
consensus_6841#0 TCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGA 359
consensus_6841#1 TCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGA 272
************************************************************
consensus_6841#0 TGAGCAAGAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGG 419
consensus_6841#1 TGAGCAAAAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGG 332
******* ****************************************************
consensus_6841#0 GCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACA 479
consensus_6841#1 GCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACA 392
************************************************************
consensus_6841#0 CCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCC 539
consensus_6841#1 CCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCC 452
************************************************************
consensus_6841#0 TCTTCGCCAGCGTCGGCGTCGGCTTCCCGGCGACCTCCTCGAGCTCGCCGTCGCCGCCGG 599
consensus_6841#1 TCTTCGCCAGCGT----------------------------------------------- 465
*************
consensus_6841#0 ACGCTCCCGGAGACCCGTATGCCAAGTATGTCTCGCCGGAGATCGAGCACCATGCTCTGC 659
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 CCGGTCAAAGTGTGGAGGTGGAGCTAATGGAGAAGGGGAAGAAGAACAAGAAGAAGACGA 719
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 ATAAAGCATTCAAGCTCAAGATCAAGGTGGGCAATCCCCACCTGAAGAGGCTGATCAGCG 779
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GGGGGATCGCCGGCGCGGTGTCGAGGACGGCCGTCGCGCCATTGGAGACGATCAGGACGC 839
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 ATTTGATGGTGGGGAGTAATGGGAATTCGACCGCGGAGGTGTTCCAGTCCATCATGAAGC 899
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 ATGAAGGGTGGACTGGGTTGTTCCGCGGTAACTTTGTTAATGTCATTCGAGTCGCCCCGA 959
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GCAAAGCAATTGAGCTCTTCGCTTTTGATACAGCTAACAAGTTCTTGACCCCCAAATCTG 1019
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GGGAACAAAAGAAGGTCCCACTCCCTCCTTCACTAGTGGCTGGGGCATTTGCTGGTGTCA 1079
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GTTCAACCCTCTGTACTTACCCTCTGGAATTAATTAAGACACGATTAACCATACAGAGAG 1139
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GTGTATATGATAACTTTCTCCACGCTCTTGTCAAAATTGTCCGTGAAGAAGGCCCTACTG 1199
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 AGCTGTACCGAGGTTTAACGCCAAGTTTAATTGGAGTTGTGCCATATGCGGCGACCAACT 1259
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 ACTTTGCTTACGACACCCTTAAGAAGGCCTACAAGAAGATGTTCAAGACGAATGAAATCG 1319
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GCAACGTTCCTACCCTGCTCATTGGGTCGGCCGCAGGAGCTATCTCAAGCACAGCTACTT 1379
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 TCCCCCTCGAGGTTGCACGCAAGCACATGCAAGTTGGCGCAGTCGGTGGCAGGAAGGTCT 1439
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 ACAAGAACATGCTTCATGCTCTCCTGAGCATTCTGGAGGATGAAGGGGTTGGAGGGCTTT 1499
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 ACAGGGGTCTGGGGCCAAGTTGCATGAAGTTGGTGCCAGCCGCCGGTATTTCGTTTATGT 1559
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GCTATGAGGCTTGCAAGAAGGTATTGACAGAGGAAGAGGATGACTGAATAGTGTGTCCTT 1619
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 ACACTCTTCAGAGCGCAGTTTTGCAACTTTTTTGACTGGAGGCATCTTTTGGGCTTGATT 1679
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 TGGAATCAAATCATGCTGGAATCGGATGAAACTCGTGTAGTTTCTTAAGAATTTTTACCC 1739
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 CAACTCTGTGCTGTCAGCTTGGCCTGATAAAACCTGCCTCTTTCCCCAGTTTTGCTTCAG 1799
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GATATCATATGCAGAGAACATGTCCAATAACTGATTTCTGCTGAGTTTATGAAGTGGTTG 1859
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 AAACGCAAATGGGCAGTCATAATTCCCAGGTGGTGAAACAACTACGAGACTCTGTAATCT 1919
consensus_6841#1 ------------------------------------------------------------
consensus_6841#0 GTGTGCAGCTTTGCAAGTGCATGAAAGGTTCATTTGATCAAAAA 1963
consensus_6841#1 --------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||