These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6841#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1963 fasta sequence [TGCAGTGACCTCTTCTCACCTCCCACCTCCTCTCTCTCTCTCCCCTTTCCTTTACCCGCCGCCGCCGGCGTCCAAGAAGCGCGGGGGTTGGTAGGGCGGTGACCGGCGGCGAGGTCAAAGGGATTGCTTGCTGCTAGTGCTGGGCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAGAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGTCGGCGTCGGCTTCCCGGCGACCTCCTCG-AGCTCGCCGTCGCCGCCGGACGCTCCCGGAGACCCGTATGCCAAGTATGTCTCGCCGGAGATCGAGCACCATGCTCTGCCCGGTCAAAGTGTGGAGGTGGAGCTAATGGAGAAGGGGAAGAAGAACAAGAAGAAGACGAATAAAGCATTCAAGCTCAAGATCAAGGTGGGCAATCCCCACCTGAAGAGGCTGATCAGCGGGGGGATCGCCGGCGCGGTGTCGAGGACGGCCGTCGCGCCATTGGAGACGATCAGGACGCATTTGATGGTGGGGAGTAATGGGAATTCGACCGCGGAGGTGTTCCAGTCCATCATGAAGCATGAAGGGTGGACTGGGTTGTTCCGCGGTAACTTTGTTAATGTCATTCGAGTCGCCCCGAGCAAAGCAATTGAGCTCTTCGCTTTTGATACAGCTAACAAGTTCTTGACCCCCAAATCTGGGGAACAAAAGAAGGTCCCACTCCCTCCTTCACTAGTGGCTGGGGCATTTGCTGGTGTCAGTTCAACCCTCTGTACTTACCCTCTGGAATTAATTAAGACACGATTAACCATACAGAGAGGTGTATATGATAACTTTCTCCACGCTCTTGTCAAAATTGTCCGTGAAGAAGGCCCTACTGAGCTGTACCGAGGTTTAACGCCAAGTTTAATTGGAGTTGTGCCATATGCGGCGACCAACTACTTTGCTTACGACACCCTTAAGAAGGCCTACAAGAAGATGTTCAAGACGAATGAAATCGGCAACGTTCCTACCCTGCTCATTGGGTCGGCCGCAGGAGCTATCTCAAGCACAGCTACTTTCCCCCTCGAGGTTGCACGCAAGCACATGCAAGTTGGCGCAGTCGGTGGCAGGAAGGTCTACAAGAACATGCTTCATGCTCTCCTGAGCATTCTGGAGGATGAAGGGGTTGGAGGGCTTTACAGGGGTCTGGGGCCAAGTTGCATGAAGTTGGTGCCAGCCGCCGGTATTTCGTTTATGTGCTATGAGGCTTGCAAGAAGGTATTGACAGAGGAAGAGGATGACTGAATAGTGTGTCCTTACACTCTTCAGAGCGCAGTTTTGCAACTTTTTTGACTGGAGGCATCTTTTGGGCTTGATTTGGAATCAAATCATGCTGGAATCGGATGAAACTCGTGTAGTTTCTTAAGAATTTTTACCCCAACTCTGTGCTGTCAGCTTGGCCTGATAAAACCTGCCTCTTTCCCCAGTTTTGCTTCAGGATATCATATGCAGAGAACATGTCCAATAACTGATTTCTGCTGAGTTTATGAAGTGGTTGAAACGCAAATGGGCAGTCATAATTCCCAGGTGGTGAAACAACTACGAGACTCTGTAATCTGTGTGCAGCTTTGCAAGTGCATGAAAGGTTCATTTGATCAAAAA] [+] EMBL AK103471 [TGCAGTGACCTCTTCTCACCTCCCACCTCCTCTCTCTCTCTCCCCTTTCCTTTACCCGCCGCCGCCGGCGTCCAAGAAGCGCGGGGGTTGGTAGGGCGGTGACCGGCGGCGAGGTCAAAGGGATTGCTTGCTGCTAGTGCTGGGCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAGAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGTCGGCGTCGGCTTCCCGGCGACCTCCTCG AGCTCGCCGTCGCCGCCGGACGCTCCCGGAGACCCGTATGCCAAGTATGTCTCGCCGGAGATCGAGCACCATGCTCTGCCCGGTCAAAGTGTGGAGGTGGAGCTAATGGAGAAGGGGAAGAAGAACAAGAAGAAGACGAATAAAGCATTCAAGCTCAAGATCAAGGTGGGCAATCCCCACCTGAAGAGGCTGATCAGCGGGGGGATCGCCGGCGCGGTGTCGAGGACGGCCGTCGCGCCATTGGAGACGATCAGGACGCATTTGATGGTGGGGAGTAATGGGAATTCGACCGCGGAGGTGTTCCAGTCCATCATGAAGCATGAAGGGTGGACTGGGTTGTTCCGCGGTAACTTTGTTAATGTCATTCGAGTCGCCCCGAGCAAAGCAATTGAGCTCTTCGCTTTTGATACAGCTAACAAGTTCTTGACCCCCAAATCTGGGGAACAAAAGAAGGTCCCACTCCCTCCTTCACTAGTGGCTGGGGCATTTGCTGGTGTCAGTTCAACCCTCTGTACTTACCCTCTGGAATTAATTAAGACACGATTAACCATACAGAGAGGTGTATATGATAACTTTCTCCACGCTCTTGTCAAAATTGTCCGTGAAGAAGGCCCTACTGAGCTGTACCGAGGTTTAACGCCAAGTTTAATTGGAGTTGTGCCATATGCGGCGACCAACTACTTTGCTTACGACACCCTTAAGAAGGCCTACAAGAAGATGTTCAAGACGAATGAAATCGGCAACGTTCCTACCCTGCTCATTGGGTCGGCCGCAGGAGCTATCTCAAGCACAGCTACTTTCCCCCTCGAGGTTGCACGCAAGCACATGCAAGTTGGCGCAGTCGGTGGCAGGAAGGTCTACAAGAACATGCTTCATGCTCTCCTGAGCATTCTGGAGGATGAAGGGGTTGGAGGGCTTTACAGGGGTCTGGGGCCAAGTTGCATGAAGTTGGTGCCAGCCGCCGGTATTTCGTTTATGTGCTATGAGGCTTGCAAGAAGGTATTGACAGAGGAAGAGGATGACTGAATAGTGTGTCCTTACACTCTTCAGAGCGCAGTTTTGCAACTTTTTTGACTGGAGGCATCTTTTGGGCTTGATTTGGAATCAAATCATGCTGGAATCGGATGAAACTCGTGTAGTTTCTTAAGAATTTTTACCCCAACTCTGTGCTGTCAGCTTGGCCTGATAAAACCTGCCTCTTTCCCCAGTTTTGCTTCAGGATATCATATGCAGAGAACATGTCCAATAACTGATTTCTGCTGAGTTTATGAAGTGGTTGAAACGCAAATGGGCAGTCATAATTCCCAGGTGGTGAAACAACTACGAGACTCTGTAATCTGTGTGCAGCTTTGCAAGTGCATGAAAGGTT ] [+] EMBL AU095113 [ AATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAGAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCANGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGTCGGCGTCGGCTTCCCGGCGACNTCCTCGAAGCTCGCCGTCGCCGNCGGAAGCT CCGGAAAACCGT ] [+] EMBL AU030619 [ TACCCTGCTCATTGGGTCNCCCNCAGNAGCTNTCTCAAGCACAGCTACTTTCCCCCTCNAGGTTGCACGCAAGCACATGCAAGTTGGCGCAGTCGNTGGCAGGAAGGTCTACAAGAACATGCTTCANGCTCTCCTGAGCATTCTGGAGGATGAAGGGNTTGGAGGGCTTTACAGGGGTCTGGGGCCAAGTTGCATGAANTTGGTGCCAGCCGCCNNTATTTCGTTTATNTGCTATGAGGCTTGCAAGAAGGTATTGACAGAGGAAGAGGATNACTGAATAGTGTGTCCTTACACTCTTCAGAGCGCAGTTTTGCAAC TTTTTGACTGGAGGCATCTTTTGGGCTTGATTTGGAATCAAATCATGCTGGAATCGGATGAAACTCGTGTAGTTTCTTAAGAATTTTTACCCCAACTCTGTGTTGTCAGCTTGGCCTGATAAAACCTGCCTCTTTCCCCAGTTTTGCTTCAGGATATCATATGCAGAGAACATGTCCAATAACTGATTTCTGCTGAGTTTATGAAGTGGTTGAAACGCAAATGGGCAGTCATAATTCCCAGGTGGTGAAACAACTACGAGACTCTGTAATCTGTGTGCAGCTTTGCAAGTGCATGAAAGGTTCATTTGATCAAAAA] consensusID : consensus_6841#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [TCATCTTTCGTTTATTTCCTTCCCTTTTTTTTTCTTTCCCTCTTATTTATTTCTTTCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAAAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGT] [+] EMBL CB641198 [TCATCTTTCGTTTATTTCCTTCCCTTTTTTTTTCTTTCCCTCTTATTTATTTCTTTCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATCGCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCACGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGATTCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGATGAGCAAAAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGGGCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACACCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCCTCTTCGCCAGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6841#0 TGCAGTGACCTCTTCTCACCTCCCACCTCCTCTCTCTCTCTCCCCTTTCCTTTACCCGCC 60 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GCCGCCGGCGTCCAAGAAGCGCGGGGGTTGGTAGGGCGGTGACCGGCGGCGAGGTCAAAG 120 consensus_6841#1 ----------------------------TCATCTTTCGTTTATTTCCTTCCCTTTTTTTT 32 * * ** * * * * * consensus_6841#0 GGATTGCTTGCTGCTAGTGCTGGGCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATC 180 consensus_6841#1 TCTTTCCCTCTTATTTATTTCTTTCAGGTTGGTTCTTTTTCTGCCAATTCCTGGAGAATC 92 ** * * * * * ************************************ consensus_6841#0 GCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCA 240 consensus_6841#1 GCGCCCTTTTTTGGCTCCCAAGATTCTTCCCCCCTCCATTTCTGCGTCTTTTCCACGCCA 152 ************************************************************ consensus_6841#0 CGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTT-CTTTTTTGGGGCCAATTAGTGAT 299 consensus_6841#1 CGGTGACGGCGACGAGCTTGCTTTTTTTTTTTTTTTTCTTTTTTGGGGCCAATTAGTGAT 212 ************************************ *********************** consensus_6841#0 TCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGA 359 consensus_6841#1 TCTTTGTCCGGCCTTGCGATTGCTGGAGTTGTGTTGGGGATCGAAACCGAGGTGAGCCGA 272 ************************************************************ consensus_6841#0 TGAGCAAGAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGG 419 consensus_6841#1 TGAGCAAAAGGAGTTGCGGCGGCGGCGGCGCGCGGTTGCAATGCGCGGCGGCGGATTGGG 332 ******* **************************************************** consensus_6841#0 GCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACA 479 consensus_6841#1 GCGGCTGCTTCCTCGCGCTGCCACCGGCGGCGGCGGCGGCGGTGCCCTCAGGCGGTGACA 392 ************************************************************ consensus_6841#0 CCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCC 539 consensus_6841#1 CCGATGGCGGATTCAACCTGGCGTGGACTCTCCACCAGTCGTTCCACCCTGCCTCCGGCC 452 ************************************************************ consensus_6841#0 TCTTCGCCAGCGTCGGCGTCGGCTTCCCGGCGACCTCCTCGAGCTCGCCGTCGCCGCCGG 599 consensus_6841#1 TCTTCGCCAGCGT----------------------------------------------- 465 ************* consensus_6841#0 ACGCTCCCGGAGACCCGTATGCCAAGTATGTCTCGCCGGAGATCGAGCACCATGCTCTGC 659 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 CCGGTCAAAGTGTGGAGGTGGAGCTAATGGAGAAGGGGAAGAAGAACAAGAAGAAGACGA 719 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 ATAAAGCATTCAAGCTCAAGATCAAGGTGGGCAATCCCCACCTGAAGAGGCTGATCAGCG 779 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GGGGGATCGCCGGCGCGGTGTCGAGGACGGCCGTCGCGCCATTGGAGACGATCAGGACGC 839 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 ATTTGATGGTGGGGAGTAATGGGAATTCGACCGCGGAGGTGTTCCAGTCCATCATGAAGC 899 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 ATGAAGGGTGGACTGGGTTGTTCCGCGGTAACTTTGTTAATGTCATTCGAGTCGCCCCGA 959 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GCAAAGCAATTGAGCTCTTCGCTTTTGATACAGCTAACAAGTTCTTGACCCCCAAATCTG 1019 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GGGAACAAAAGAAGGTCCCACTCCCTCCTTCACTAGTGGCTGGGGCATTTGCTGGTGTCA 1079 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GTTCAACCCTCTGTACTTACCCTCTGGAATTAATTAAGACACGATTAACCATACAGAGAG 1139 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GTGTATATGATAACTTTCTCCACGCTCTTGTCAAAATTGTCCGTGAAGAAGGCCCTACTG 1199 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 AGCTGTACCGAGGTTTAACGCCAAGTTTAATTGGAGTTGTGCCATATGCGGCGACCAACT 1259 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 ACTTTGCTTACGACACCCTTAAGAAGGCCTACAAGAAGATGTTCAAGACGAATGAAATCG 1319 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GCAACGTTCCTACCCTGCTCATTGGGTCGGCCGCAGGAGCTATCTCAAGCACAGCTACTT 1379 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 TCCCCCTCGAGGTTGCACGCAAGCACATGCAAGTTGGCGCAGTCGGTGGCAGGAAGGTCT 1439 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 ACAAGAACATGCTTCATGCTCTCCTGAGCATTCTGGAGGATGAAGGGGTTGGAGGGCTTT 1499 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 ACAGGGGTCTGGGGCCAAGTTGCATGAAGTTGGTGCCAGCCGCCGGTATTTCGTTTATGT 1559 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GCTATGAGGCTTGCAAGAAGGTATTGACAGAGGAAGAGGATGACTGAATAGTGTGTCCTT 1619 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 ACACTCTTCAGAGCGCAGTTTTGCAACTTTTTTGACTGGAGGCATCTTTTGGGCTTGATT 1679 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 TGGAATCAAATCATGCTGGAATCGGATGAAACTCGTGTAGTTTCTTAAGAATTTTTACCC 1739 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 CAACTCTGTGCTGTCAGCTTGGCCTGATAAAACCTGCCTCTTTCCCCAGTTTTGCTTCAG 1799 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GATATCATATGCAGAGAACATGTCCAATAACTGATTTCTGCTGAGTTTATGAAGTGGTTG 1859 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 AAACGCAAATGGGCAGTCATAATTCCCAGGTGGTGAAACAACTACGAGACTCTGTAATCT 1919 consensus_6841#1 ------------------------------------------------------------ consensus_6841#0 GTGTGCAGCTTTGCAAGTGCATGAAAGGTTCATTTGATCAAAAA 1963 consensus_6841#1 -------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||