These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6849#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1114 fasta sequence [AAGAAAAGGAAAAATCCGCCGGCGGCGGCGGCGGCCTCCGCCTCCGCCTTGAAGACCTGACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCGATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGGGTGAACCATTAAGAACTCTTCAAAATGATCAATCAGAAGCTAAGGATAAGGGGAACAAGATAGATATTAAGTACGAGCTGACTTCTGCAATACTGAGTCTAAAGCATCAACAAGCATCTGGCAGGTTGAAGATGCCTTCAAGACTGCCAGCAAGATATCCCCATAATGTGGGACATTGTGCAGAGCTTATCATGAATTTGGGCATTGGAGAAGATGTTCATTGCTTAAATGTAATGAGATCGTGTAACCATGAGAACATATTACATCCTGGAATTATTAAGGAAGTTATCATTGGTGACAGCTCCTTTAATGTGGCCTGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCAACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAACACATATTGTTTCCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGAGACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTA-GATATAAAATACATTCTCACCAAATTTTAAATCCAAGCTTAACTTCGTTTGTTGCCTAATCTTAATAGGNGNCTAATGGGGATGCAAAAGGACTGTCTTTAAAAAAAAA] [+] EMBL AK071720 [AAGAAAAGGAAAAATCCGCCGGCGGCGGCGGCGGCCTCCGCCTCCGCCTTGAAGACCTGACCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCGATTTCTATACCACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGGGTGAACCATTAAGAACTCTTCAAAATGATCAATCAGAAGCTAAGGATAAGGGGAACAAGATAGATATTAAGTACGAGCTGACTTCTGCAATACTGAGTCTAAAGCATCAACAAGCATCTGGCAGGTTGAAGATGCCTTCAAGACTGCCAGCAAGATATCCCCATAATGTGGGACATTGTGCAGAGCTTATCATGAATTTGGGCATTGGAGAAGATGTTCATTGCTTAAATGTAATGAGATCGTGTAACCATGAGAACATATTACATCCTGGAATTATTAAGGAAGTTATCATTGGTGACAGCTCCTTTAATGTGGCCTGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCAACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAACACATATTGTTTCCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGAGACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTA GATATAAAATACATTCTCACCAAA ] [+] EMBL OSS13563A [ TTCCTTGAATGTTCTACTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGAGACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTAGGATATAAAATACATTCTCACCAAATTTTAAATCCAAGCTTAACTTCGTTTGTTGCCTAATCTTAATAGGNGNCTAATGGGGATGCAAAAGG ] [+] EMBL AU101775 [ nCCTTGAATGTTCTNCTCCAGTCGTGAAGCTCACAAATTTTAGAAAGAAANTTCCAGAGCAAGCTATGACCTGGGGTNTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGNCCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGAGACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTA GATATAAAATACATTCTCACCAAATTTTAAATCCAAGCTTAA TTCGTTTGTTGCCTAATCTTAATA GAGACTAATGGGAATGCAAAAGTACTGTCTTTAAAAAAAAA] consensusID : consensus_6849#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [TCCAATTTCTGGGTGCTAAAGGCTTCACCACAGCTGTTTGGCAGGGTCGAAAATCCCTTCAAGGCTTACCAAGCAAAATATCCCCCCTAACGTGGGACCATTGTGCAGAGCTTCATCATGAATTTGGCCCTTGGAGAAGATGTTCCTTGGTTAAATGTAATGAGATCGTGTATCCCTAAGACCATTTTCCATCCTGGATTTTTTAAGGAAGTTATCATTGGTGACAGCTCCTTTAATGTGGCCCGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCAACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAATACATATTGTTTCCTTGAATGTTCTACTCCCGTCGTGAAGCTCCCAAATTTTAGAAAAAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759841 [TCCAATTTCTGGGTGCTAAAGGCTTCACCACAGCTGTTTGGCAGGGTCGAAAATCCCTTCAAGGCTTACCAAGCAAAATATCCCCCCTAACGTGGGACCATTGTGCAGAGCTTCATCATGAATTTGGCCCTTGGAGAAGATGTTCCTTGGTTAAATGTAATGAGATCGTGTATCCCTAAGACCATTTTCCATCCTGGATTTTTTAAGGAAGTTATCATTGGTGACAGCTCCTTTAATGTGGCCCGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCAACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAGATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCATGGGAACTTTTCTCTAGAGAATACATATTGTTTCCTTGAATGTTCTACTCCCGTCGTGAAGCTCCCAAATTTTAGAAAAAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTGCGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCATGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCGATAGCTTTAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6849#0 AAGAAAAGGAAAAATCCGCCGGCGGCGGCGGCGGCCTCCGCCTCCGCCTTGAAGACCTGA 60 consensus_6849#1 ------------------------------------------------------------ consensus_6849#0 CCAGCCGCCGGCCAGCATCTCCATCCGCCCTGCCCTGCGGCTTACACCGATTTCTATACC 120 consensus_6849#1 ------------------------------------------------------------ consensus_6849#0 ACAGAAGATTGCTACGCCAGCTTCCAGAATAACCATCATGGGTGAACCATTAAGAACTCT 180 consensus_6849#1 ------------------------------------------------------------ consensus_6849#0 TCAAAATGATCAATCAGAAGCTAAGGATAAGGGGAACAAGATAGATATTAAGTACGAGCT 240 consensus_6849#1 ---------------------------------------------------------TCC 3 * consensus_6849#0 GACTTCTGCAATACTGAGTCTAAAGCATCA--ACAAGCATCTGGCAGG-TTGAAGATGCC 297 consensus_6849#1 AATTTCTG-GGTGCTAA-----AGGCTTCACCACAGCTGTTTGGCAGGGTCGAAAATCCC 57 * ***** * ** * * ** *** *** * ******* * *** ** ** consensus_6849#0 TTCAAGACTGCC--AGCAAGATATCCCCA-TAATGTGGGAC-ATTGTGCAGAGCTT-ATC 352 consensus_6849#1 TTCAAGGCTTACCAAGCAAAATATCCCCCCTAACGTGGGACCATTGTGCAGAGCTTCATC 117 ****** ** * ***** ******** *** ******* ************** *** consensus_6849#0 ATGAATTTGGGCATTGGAGAAGATGTTCATTGCTTAAATGTAATGAGATCGTGTAACCAT 412 consensus_6849#1 ATGAATTTGGCCCTTGGAGAAGATGTTCCTTGGTTAAATGTAATGAGATCGTGTATCCCT 177 ********** * *************** *** ********************** ** * consensus_6849#0 GAGAACATATTACATCCTGGAATTATTAAGGAAGTTATCATTGGTGACAGCTCCTTTAAT 472 consensus_6849#1 AAGACCATTTTCCATCCTGGATTTTTTAAGGAAGTTATCATTGGTGACAGCTCCTTTAAT 237 *** *** ** ********* ** *********************************** consensus_6849#0 GTGGCCTGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCA 532 consensus_6849#1 GTGGCCCGGATGGAGCGTTACACTCGTGTGTTATCAGAATATGTGCAATTGCTCCTGTCA 297 ****** ***************************************************** consensus_6849#0 ACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAG 592 consensus_6849#1 ACAGCTCGGTTTCATGCCCCCGTTGGTGCAACTCTCTTACTTCCGTCACCCCATCTCCAG 357 ************************************************************ consensus_6849#0 ATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCAT 652 consensus_6849#1 ATGGTTTTGAGAGGAATATTTGACGGGATGGAACAGCTGTTTCTCAACGGGTATTATCAT 417 ************************************************************ consensus_6849#0 GGGAACTTTTCTCTAGAGAACACATATTGTTTCCTTGAATGTTCTACTCCAGTCGTGAAG 712 consensus_6849#1 GGGAACTTTTCTCTAGAGAATACATATTGTTTCCTTGAATGTTCTACTCCCGTCGTGAAG 477 ******************** ***************************** ********* consensus_6849#0 CTCACAAATTTTAGAAAGAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTG 772 consensus_6849#1 CTCCCAAATTTTAGAAAAAAAGTTCCAGAGCAAGCTATGACCTGGGGTGTGGAGGAGGTG 537 *** ************* ****************************************** consensus_6849#0 CGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCA 832 consensus_6849#1 CGGAGTGATCGATATTTGTCCATAAGCTGCATTGAGTGCGAAATTTGTTCTTTTGTTGCA 597 ************************************************************ consensus_6849#0 TGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCG 892 consensus_6849#1 TGTTCTTTGGACCAGGTTGTTGGGTCTTCTCTCTTTTGTGTTTGAGTTATATAAAAGCCG 657 ************************************************************ consensus_6849#0 ATAGCTTTACGATGGTGGTGTACAAAATTCTGTGTCGGGCACATTTAATAGTATTTAGGA 952 consensus_6849#1 ATAGCTTTAAAAAAAAAAAAAAAAAAAAA------------------------------- 686 ********* * * **** consensus_6849#0 GACCGTGGCACAAATGCCTTTGGCAACTCTGCGTTGTAAGGTAGATAGGTGTAGATATAA 1012 consensus_6849#1 ------------------------------------------------------------ consensus_6849#0 AATACATTCTCACCAAATTTTAAATCCAAGCTTAACTTCGTTTGTTGCCTAATCTTAATA 1072 consensus_6849#1 ------------------------------------------------------------ consensus_6849#0 GGNGNCTAATGGGGATGCAAAAGGACTGTCTTTAAAAAAAAA 1114 consensus_6849#1 ------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||