These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6852#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 320 fasta sequence [AGGAGAGAGAGGGTGATGGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACGCCGACGT-CTGGCGCGCGCGCTGCGGCGGCTGGACGGGCGGTCGCTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACGTGGCGCGCGCTCTGCCTCGCGGAGTGGCCGTCCATGGCGGGGCACCCNGGGCTGCTGTCCGGTNGTCCCGCCNCGCCGGCTCTTCNCCGACGCGTTCCCGTTTCCCGCGACCTAACGNCGGGAAGCTCGGCGGCGGCGGCG] [+] EMBL AU063883 [AGGAGAGAGAGGGTGATGGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACGCCGACGT CTGGCGCGCGCGCTGCGGCGGCTGGACGGGCGGTCGCTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACGTNGCGCGCGCTCTGCCTCGCGGAGTNGCCGTCCATNGCGGGGCACCCCGGGCTGCTGTCCGGTNGTCCCGCCNCGCCGGCTCTTCNCCGACGCGTTCCCGTTTCCCGCGACCTAACGNC ] [+] EMBL AU065548 [AGGAGAGAGAGGGTGATGGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACGCCGACGTNCTGGCGCGCGCGCNGCGGCGGCTGGACGGGCGGTCGCTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACGTGGCGCGCGCNCTGCCTCGCGGAGTGGCCGTTCATGGCGGGGCA CCNGGGC ] [+] EMBL AU069329 [ ATGGCGCCAGGGAGAGAAGAAGAGAAAATNGTGGCGACTACTACNATAGAGGACCTGCACGCCGACGT CTGGCGCGCGCNCTGCGGCGGCTGGACGGGCGGTCGCTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACGTGGCGCGCGCTCTGCCTCGCGNAGTGGCCGTCCATGGCGGGGCACCCNGGGCTGCTGTCC GTGGTCCCNCCGCGCCGGCTCTTCGCCGACGCGTTCCCG TTCCCGCGACCGGACGCCGGGAAGCTCGGCGGCGGCGGCG] consensusID : consensus_6852#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [ATNGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACNNCGACGTNTGNGCGCGCNCGTGNNGCNCTTGGNACGGGCGGTCGCTGGCGGCGGCGAGCTGCNCACGGCGGGCTCCGGGCGCTCGCCGGACCCGGAGACGTGGCGCGCGCTCTGCCTCGCGGTAGTGGCCGTCCATGGCGGGGCACCGGGCNTGCTGTCCGTGGTCCCGCCGCGCCGCTCTTCGCCGACGGTTCCCGTTCCCGCGCCCGGACGCNGNG] [+] EMBL AU063434 [ATNGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACGATAGAGGACCTGCACNNCGACGTNTGNGCGCGCNCGTGNNGCNCTTGGNACGGGCGGTCGCTGGCGGCGGCGAGCTGCNCACGGCGGGCTCCGGGCGCTCGCCGGACCCGGAGACGTGGCGCGCGCTCTGCCTCGCGGTAGTGGCCGTCCATGGCGGGGCACCGGGCNTGCTGTCCGTGGTCCCGCCGCGCCGCTCTTCGCCGACGGTTCCCGTTCCCGCGCCCGGACGCNGNG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6852#0 AGGAGAGAGAGGGTGATGGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACG 60 consensus_6852#1 ---------------ATNGCGCCAGGGAGAGAAGAAGAGAAAATGGTGGCGACTACTACG 45 ** ****************************************** consensus_6852#0 ATAGAGGACCTGCACGCCGACGTCTGG-CGCGCGCGCTGCGGCGGCTGGACGGGCGGTCG 119 consensus_6852#1 ATAGAGGACCTGCACNNCGACGTNTGNGCGCGCNCGTGNNGCNCTTGGNACGGGCGGTCG 105 *************** ****** ** ***** ** * * *********** consensus_6852#0 CTGGCGGCGGCGAGCTGCGCCACGGCGGGGCTCCGGGCGCTCGCCGCGGACCCGGAGACG 179 consensus_6852#1 CTGGCGGCGGCGAGCTGCNC-ACGGCGGG-CTCCGGGCGCTCGCCG--GACCCGGAGACG 161 ****************** * ******** **************** ************ consensus_6852#0 TGGCGCGCGCTCTGCCTCGCGG-AGTGGCCGTCCATGGCGGGGCACCCNGGGCTGCTGTC 238 consensus_6852#1 TGGCGCGCGCTCTGCCTCGCGGTAGTGGCCGTCCATGGCGGGGCACC-GGGCNTGCTGTC 220 ********************** ************************ ** ******* consensus_6852#0 CGGTNGTCCCGCCNCGCCGGCTCTTCNCCGACGCGTTCCCGTTTCCCGCGACCTAACGNC 298 consensus_6852#1 CG-TGGTCCCGCCGCGCCG-CTCTTCGCCGACG-GTTCCCGTT-CCCGCGCCCGGACGCN 276 ** * ******** ***** ****** ****** ********* ****** ** *** consensus_6852#0 GGGAAGCTCGGCGGCGGCGGCG 320 consensus_6852#1 GNG------------------- 279 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||