These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6855#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1736 fasta sequence [AAATAATAATGGCAGCTCCCACCTCCATGGCGAACGCGGATGGCGAGAGCACGCGCACCGGCTACTGCGCCGCGACCAAGTCGTTCCGCAGCCTCCGGCCGCCGGTGCCGCTGCCTCCGCCGGACGTCCCGCTCTCCTTCCCGGAGTTCGCGTTCTCGCTGCTGCCGCGGTCGTCGTCGTCGTCGTCGTCGTCTCTTCTCCCGGCGAACCCGGCGCTCGTCGACGCGGCCACTGGCGAGGCCGTCTCGTTCCAGGCGTTCCTGTCGCGGGTGCGCGCGCTCGCCGGAGCCCTCCGCTCGCGCGTCGGGCTGCGCGGCGGCGACGTCGCGTTCGTGCTCGCGCCCGCAGGGCTCGACGTGCCCGTGCTGTACTTCGCGCTCCTCTCCATCGGCGCCGTCGTGTCCCCCGCCAACCCGGCCCTCACCCCCGCCGAGGTTTCCCGCCTCGTCTCCCTCTCCGGCGCATCCGTCGCCTTCGCCGTCTCGTCCACAGCCACCAAGCTCCCCGCTGGCCTCACCACCGTCGTCCTCCTCGACTCGCCACACTTCCGCTCCCTCTTGATGGATTGCGGCCAAGCCCAAGGACAGGAGCCGCTGCCGGTGGTGGTGGTGCGGCAGTCGGAGACGGCGGCGATCCAGTACTCCTCGGGGACGACGGGGCGGGTGAAGGCGGCGGCGCTGCCTCACCGGAGCTTCATCGCCATGGTGGCAGGGTTCCACGCGCTGCGGGCCAAGGCTCGGGAGGTCAGGACGCTGCTCGGTGCCCCGATGTTCCACTCCATGGGGTTCTTGTTCGTGCTGCAGGGCGTCGCGCTGGGGGCGACGACGGTGGTGGTGACGGACGCGGTGGCGCGGGCCGGGATACGGGGGCTCGTGGAGGCGGCGGAGCGTTGGGCGGTCATGGACATGACGGCCTCGCCGCCGGTGGTGCTGGGGATGACCAAGCAGAGGTGCCGGCTGCCGGCGCTGGAGCGGATAACCTGCGGCGGCGCCCCGCTGCCGGCGCCGGCGATCGAACGGTTCCGCCGGCGATTCCCCCACGTCGATTTGTGCATGGGTTATGGATCAACCGAGGCAGGTGGCATATCAAGGATGATCAGCCAGGAAGAGTGCAACCACATAGGCTCTGCTGGCCGTGTCACTGAGAATGTCGAGGTAAAGATTGTTGACCATGTAACAGGCAAGCCATTGCCTGCCGGGCAGCAAGGGGAGCTTTGGGTGAGAGGGCCTGCCGTCAT-GACAGGTTACGTGGGTGACAACGAGGCCAATGCAACCACCTTTAATTCTGAAGGATGGCTGAAAACTGGTGACCTTTGCTATATTGATCAGGACGGGTTTCTTTTTGTAGTTGACAGGCTAAAGGAACTGATTAAATACAAGGCCTACCAGGTACCACCTGCAGAGCTGGAGCTTGTCCTGCATTCTTTGCCACAAATTGTTGATGCTGCAGTTATGCCGTATCCTCACGAAGAAGCAGGGCAGATACCAGTAGCACTTGTCGTAAAGCAACCAGGAAGCAAGCTTACTGAAGCAGAAGTCATGTACAATGTCGCCAAGCA-GGTAGCTCCATACAAGAAGATCCGGAAAGTGCTGTTTGTTGACTCCATACCCAAATCGCCATCTGGGAAGATCTTGAGAAGGGAATTGGTAAATCATCTGCGGTTGTGTGAATTGTCGAGATTGTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTCCCCCAAAAAAAAAA] [+] EMBL AK108656 [AAATAATAATGGCAGCTCCCACCTCCATGGCGAACGCGGATGGCGAGAGCACGCGCACCGGCTACTGCGCCGCGACCAAGTCGTTCCGCAGCCTCCGGCCGCCGGTGCCGCTGCCTCCGCCGGACGTCCCGCTCTCCTTCCCGGAGTTCGCGTTCTCGCTGCTGCCGCGGTCGTCGTCGTCGTCGTCGTCGTCTCTTCTCCCGGCGAACCCGGCGCTCGTCGACGCGGCCACTGGCGAGGCCGTCTCGTTCCAGGCGTTCCTGTCGCGGGTGCGCGCGCTCGCCGGAGCCCTCCGCTCGCGCGTCGGGCTGCGCGGCGGCGACGTCGCGTTCGTGCTCGCGCCCGCAGGGCTCGACGTGCCCGTGCTGTACTTCGCGCTCCTCTCCATCGGCGCCGTCGTGTCCCCCGCCAACCCGGCCCTCACCCCCGCCGAGGTTTCCCGCCTCGTCTCCCTCTCCGGCGCATCCGTCGCCTTCGCCGTCTCGTCCACAGCCACCAAGCTCCCCGCTGGCCTCACCACCGTCGTCCTCCTCGACTCGCCACACTTCCGCTCCCTCTTGATGGATTGCGGCCAAGCCCAAGGACAGGAGCCGCTGCCGGTGGTGGTGGTGCGGCAGTCGGAGACGGCGGCGATCCAGTACTCCTCGGGGACGACGGGGCGGGTGAAGGCGGCGGCGCTGCCTCACCGGAGCTTCATCGCCATGGTGGCAGGGTTCCACGCGCTGCGGGCCAAGGCTCGGGAGGTCAGGACGCTGCTCGGTGCCCCGATGTTCCACTCCATGGGGTTCTTGTTCGTGCTGCAGGGCGTCGCGCTGGGGGCGACGACGGTGGTGGTGACGGACGCGGTGGCGCGGGCCGGGATACGGGGGCTCGTGGAGGCGGCGGAGCGTTGGGCGGTCATGGACATGACGGCCTCGCCGCCGGTGGTGCTGGGGATGACCAAGCAGAGGTGCCGGCTGCCGGCGCTGGAGCGGATAACCTGCGGCGGCGCCCCGCTGCCGGCGCCGGCGATCGAACGGTTCCGCCGGCGATTCCCCCACGTCGATTTGTGCATGGGTTATGGATCAACCGAGGCAGGTGGCATATCAAGGATGATCAGCCAGGAAGAGTGCAACCACATAGGCTCTGCTGGCCGTGTCACTGAGAATGTCGAGGTAAAGATTGTTGACCATGTAACAGGCAAGCCATTGCCTGCCGGGCAGCAAGGGGAGCTTTGGGTGAGAGGGCCTGCCGTCAT GACAGGTTACGTGGGTGACAACGAGGCCAATGCAACCACCTTTAATTCTGAAGGATGGCTGAAAACTGGTGACCTTTGCTATATTGATCAGGACGGGTTTCTTTTTGTAGTTGACAGGCTAAAGGAACTGATTAAATACAAGGCCTACCAGGTACCACCTGCAGAGCTGGAGCTTGTCCTGCATTCTTTGCCACAAATTGTTGATGCTGCAGTTATGCCGTATCCTCACGAAGAAGCAGGGCAGATACCAGTAGCACTTGTCGTAAAGCAACCAGGAAGCAAGCTTACTGAAGCAGAAGTCATGTACAATGTCGCCAAGCA GGTAGCTCCATACAAGAAGATCCGGAAAGTGCTGTTTGTTGACTCCATACCCAAATCGCCATCTGGGAAGATCTTGAGAAGGGAATTGGTAAATCATCTGCGGTTGTGTGAATTGTCGAGATTGTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGT ] [+] EMBL AU173028 [ CACCTCCATGGCGAACGCGGATGGCGAGAGCACGCGCACCGGCTACTGCGCCGCGACCAAGTCGTTCCGCAGCCTCCGGCCGCCGGTGCCGNTGCCTCCGCCGGACGTCCCGCTCTCCTTCCCGGAGTTCGCGTTCTCGCTGCTGCCGCGGTCGTCGTCGTCGTCGTCGTCGTCTCTTCTCCCGGCGAACCCGGCGCTCGTCGACGCGGCCACTGGCGAGGCCGTCTCGTTCCAGGCGTTCCTGTCGCGGGTGCGCGCGCTCGCCGGAGCCCTCCGCTCGCGCGTCGGGCTGCGCGGCGGCGACGTCGCGTTCGTGCTCGCGCCCGCAGGGCTCGACGTGCCCGTGCTGTACTTCGCGCTCCTCTCCATCGGCGCCGTCGTGTCCCCCGCCAACCCGGCCCTCACCCCCGCCGAGGTTTCCCGCCTCGTCTCCCT ] [+] EMBL BM038192 [ cCAA GGGAGCTTTGGGTGAGAGGCCCTCCCTTCATGGACAGGTTACGTGGGTGACAACGA GCCCATGCAACCACCTTTGATTCTGAAGGATGGCTGAAAACTGGTGACCTTTGCTATATTGATCAGGACGGGTTTCTTTTTGTAGTTGACAGGCTAAAGGAACTGATTAAATACAAGGCCTACCAGGTACCACCTGCAGAGCTGGAGCTTGTCCTGCATTCTTTGCCACCAATTGTTGATGCTGCAGTTATGCCGTATCCTCACGAAGAAGCAGGGCAGATACCAGTAGCACTTGTCGTAAAGCAACCAGGAAGCAAGCTTACTGAAGCAGAAGTCATGTACAATGTCGCCAAGCACGGTAGCTCCATACCAGAAGATCCGGAAAGTGCTGTTTGTTGACTCCATACCCCAATCGCCATCTGGGAAGATCTTGAGAAGGGAATTGGTAAATCATCTGCGGTTGTGTGAATTGTCGAGATTGTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTCCCCCAAAAAAAAAA] consensusID : consensus_6855#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 341 fasta sequence [GACTCCATACCCAAATCGCCATCCTGGGAAGATCCTTNAGAAGGGAATTGGTANATCCATCTGCGGTTGTGTGAATTGTCGAGATTNTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTGTCAAAAAGGNAAAAGTAAAAAAGAAAATGTGCTGCAATTGTACCGGAAGAAGAATATTGGATAAACGGAAGGCTCATAACATATGTTTATGAGGGGCTGCACTATACTGTCGAACATGATGCTGGTGTACAAAGAAAAGTAAGTTTGTTGAGATTGTTTAGTGGGATTAGCTACTTGTATAAGAAGCAATAAACAAGTCTGTCTCAAAAAAAAA] [+] EMBL AU031119 [GACTCCATACCCAAATCGCCATCCTGGGAAGATCCTTNAGAAGGGAATTGGTANATCCATCTGCGGTTGTGTGAATTGTCGAGATTNTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTGTCAAAAAGGNAAAAGTAAAAAAGAAAATGTGCTGCAATTGTACCGGAAGAAGAATATTGGATAAACGGAAGGCTCATAACATATGTTTATGAGGGGCTGCACTATACTGTCGAACATGATGCTGGTGTACAAAGAAAAGTAAGTTTGTTGAGATTGTTTAGTGGGATTAGCTACTTGTATAAGAAGCAATAAACAAGTCTGTCTCAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6855#0 AAATAATAATGGCAGCTCCCACCTCCATGGCGAACGCGGATGGCGAGAGCACGCGCACCG 60 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 GCTACTGCGCCGCGACCAAGTCGTTCCGCAGCCTCCGGCCGCCGGTGCCGCTGCCTCCGC 120 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 CGGACGTCCCGCTCTCCTTCCCGGAGTTCGCGTTCTCGCTGCTGCCGCGGTCGTCGTCGT 180 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 CGTCGTCGTCGTCTCTTCTCCCGGCGAACCCGGCGCTCGTCGACGCGGCCACTGGCGAGG 240 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 CCGTCTCGTTCCAGGCGTTCCTGTCGCGGGTGCGCGCGCTCGCCGGAGCCCTCCGCTCGC 300 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 GCGTCGGGCTGCGCGGCGGCGACGTCGCGTTCGTGCTCGCGCCCGCAGGGCTCGACGTGC 360 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 CCGTGCTGTACTTCGCGCTCCTCTCCATCGGCGCCGTCGTGTCCCCCGCCAACCCGGCCC 420 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 TCACCCCCGCCGAGGTTTCCCGCCTCGTCTCCCTCTCCGGCGCATCCGTCGCCTTCGCCG 480 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 TCTCGTCCACAGCCACCAAGCTCCCCGCTGGCCTCACCACCGTCGTCCTCCTCGACTCGC 540 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 CACACTTCCGCTCCCTCTTGATGGATTGCGGCCAAGCCCAAGGACAGGAGCCGCTGCCGG 600 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 TGGTGGTGGTGCGGCAGTCGGAGACGGCGGCGATCCAGTACTCCTCGGGGACGACGGGGC 660 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 GGGTGAAGGCGGCGGCGCTGCCTCACCGGAGCTTCATCGCCATGGTGGCAGGGTTCCACG 720 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 CGCTGCGGGCCAAGGCTCGGGAGGTCAGGACGCTGCTCGGTGCCCCGATGTTCCACTCCA 780 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 TGGGGTTCTTGTTCGTGCTGCAGGGCGTCGCGCTGGGGGCGACGACGGTGGTGGTGACGG 840 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 ACGCGGTGGCGCGGGCCGGGATACGGGGGCTCGTGGAGGCGGCGGAGCGTTGGGCGGTCA 900 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 TGGACATGACGGCCTCGCCGCCGGTGGTGCTGGGGATGACCAAGCAGAGGTGCCGGCTGC 960 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 CGGCGCTGGAGCGGATAACCTGCGGCGGCGCCCCGCTGCCGGCGCCGGCGATCGAACGGT 1020 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 TCCGCCGGCGATTCCCCCACGTCGATTTGTGCATGGGTTATGGATCAACCGAGGCAGGTG 1080 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 GCATATCAAGGATGATCAGCCAGGAAGAGTGCAACCACATAGGCTCTGCTGGCCGTGTCA 1140 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 CTGAGAATGTCGAGGTAAAGATTGTTGACCATGTAACAGGCAAGCCATTGCCTGCCGGGC 1200 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 AGCAAGGGGAGCTTTGGGTGAGAGGGCCTGCCGTCATGACAGGTTACGTGGGTGACAACG 1260 consensus_6855#1 ---------GACTCCATACCCAAA---TCGCCATCCTGGGAAGATCCTTNAG----AAGG 44 ** * *** ** ** * * * * * * ** * consensus_6855#0 AGGCCAATGCAACCACCTTTAATTCTGAAGGATGGCTGAAAACTGGTGACCTTTGCTATA 1320 consensus_6855#1 GAATTGGTANATCCATCTGCGGTTGTGT-GAATTGTCGAGA--TTNTGACTGTGCGAGTG 101 * * *** ** ** ** * ** * ** * * **** * * consensus_6855#0 TTGATCAGGACGGGTTTCTTTTTGTAGTTGACAGGCTAAAGGAACTGATTAAATACAAGG 1380 consensus_6855#1 TTGTACCCTATAGTTCAATTCTTGTGTCAAAAAGGNAAAAGTAAAAAAGAAAATGTGCTG 161 *** * * * * ** **** * *** **** ** * **** * consensus_6855#0 CCTACCAGGTACCACCTGCAGAGCTGGAGCTTGTCCTGCATTCTTTGCCACAAATTGTTG 1440 consensus_6855#1 CAATT---GTACCGGAAGAAGAATATTGGATAAACGGAAGGCTCATAACATATGTTTATG 218 * ***** * *** * * * * ** * ** ** consensus_6855#0 ATG--CTGCAGTTATGCCGTATCCTCACGAAGAAGCAGGGCAGATACCAGTAGCACTTGT 1498 consensus_6855#1 AGGGGCTGCA-CTATACTGT-CGAACATGATGCTGGTGTACAAAGAAAAGTAA-GTTTGT 275 * * ***** *** * ** ** ** * * * ** * * **** **** consensus_6855#0 CGTAAAGCAACCAG-GAAGCAAGCTTACTGAAGCAGAAGTCATGTACAATGTCGCCAAGC 1557 consensus_6855#1 TG-AGATTGTTTAGTGGGATTAGCTACTTGTATAAGAAGCAATAAACAAGTCTGTCTCAA 334 * * * ** * **** ** * ***** ** **** * * consensus_6855#0 AGGTAGCTCCATACAAGAAGATCCGGAAAGTGCTGTTTGTTGACTCCATACCCAAATCGC 1617 consensus_6855#1 AAAAAAA----------------------------------------------------- 341 * * consensus_6855#0 CATCTGGGAAGATCTTGAGAAGGGAATTGGTAAATCATCTGCGGTTGTGTGAATTGTCGA 1677 consensus_6855#1 ------------------------------------------------------------ consensus_6855#0 GATTGTGACTGTGCGAGTGTTGTACCCTATAGTTCAATTCTTGTCCCCCAAAAAAAAAA 1736 consensus_6855#1 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||