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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1950 fasta sequence
[GATCGATCGATATCGATAGGCAGCAGAAGGGGAGAAAAGGAAACCGATCTCGGTCATGGCCACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCACACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCTGAACAGCGGTGCCCACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAGGGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGTGTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCAAGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTTCACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCACGCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCGAGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGATGGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCACCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGTGCCATGGGCTGGGTCGATCTCTGGACCGGCATCCTAATCTACGATCTCCTCCATGACGACAAGGACCAAGACCGGCCAACGCTCCGGCACATGCCGCTGCCGCTGCCGATGCACGCCATCACCGGCAACCACGGGATGGGCGACAAGCTAGCCTTAGGCTGCCCACGCTCTCTCCGTGGCATTGCCTCTGTCACGAGGCGCGGCAAGGCCTGCCTCAAGCTCGCCGGCGTGCATGTCACCGGAGAGCGCCTCCCCTACAACGACGCTGAAACCCAGCTGCCGGCGTTCGCCGTCGACGACTGGACTGTCACGACATGGAGCAATGACAAGATGAAGGGCTACTTTGAGGACTGGCAGGAGGATTTCACGATTCGCGGTTCCGAGGTCAGGATTAGCAACGCCATGCGCTCGGATCTGCTGAGATCTGGGTTGCTGTACCGTAAACCGTCACGAGGGGATGGCGATGAGGCTACGGTGGAGGAGCTGGCTTTGCACAATCTCTGGGTGTCTCATCCCACCCCCAGCCTAGATGGTGAAGAAGATGTCATCTACCTGCTGGCCAAGCCAAAGTGCTTCCACCCCAAGGCGTGGGTTCTTGCTCTCGACACGAGGAGCAGCACGCTGCTAGGCGTGGTTGAGTTTGGCACTGAAACCGCACCATCTGCAGGTGTCACGTATCGCCCCA-GTACTATATCCAAGTACATGAGTCTGGTGACTTCTCCAGT-GACTGGGAGAACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAGGCGATGCATCGAAGATTAAGACTGAATGATG-TTGTTAAACATATACTCCCTCCGTTTCATAATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATAAATCTAGACACATATTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATAAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAACGTGTTTGTTTCCCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGGAACAAACAGCCAGTAGCTTGTCGATCTGTTACTAACTTACGATGAAGCATCATCATTATCATCTCATAAAAACTTGTAATGGGATTTTATATTCGTGACTATCACGCACTTTGTTTAAGGGGAGAAGAGAAATC]
[+] EMBL AK108630 [GATCGATCGATATCGATAGGCAGCAGAAGGGGAGAAAAGGAAACCGATCTCGGTCATGGCCACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCACACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCTGAACAGCGGTGCCCACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAGGGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGTGTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCAAGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTTCACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCACGCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCGAGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGATGGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCACCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGTGCCATGGGCTGGGTCGATCTCTGGACCGGCATCCTAATCTACGATCTCCTCCATGACGACAAGGACCAAGACCGGCCAACGCTCCGGCACATGCCGCTGCCGCTGCCGATGCACGCCATCACCGGCAACCACGGGATGGGCGACAAGCTAGCCTTAGGCTGCCCACGCTCTCTCCGTGGCATTGCCTCTGTCACGAGGCGCGGCAAGGCCTGCCTCAAGCTCGCCGGCGTGCATGTCACCGGAGAGCGCCTCCCCTACAACGACGCTGAAACCCAGCTGCCGGCGTTCGCCGTCGACGACTGGACTGTCACGACATGGAGCAATGACAAGATGAAGGGCTACTTTGAGGACTGGCAGGAGGATTTCACGATTCGCGGTTCCGAGGTCAGGATTAGCAACGCCATGCGCTCGGATCTGCTGAGATCTGGGTTGCTGTACCGTAAACCGTCACGAGGGGATGGCGATGAGGCTACGGTGGAGGAGCTGGCTTTGCACAATCTCTGGGTGTCTCATCCCACCCCCAGCCTAGATGGTGAAGAAGATGTCATCTACCTGCTGGCCAAGCCAAAGTGCTTCCACCCCAAGGCGTGGGTTCTTGCTCTCGACACGAGGAGCAGCACGCTGCTAGGCGTGGTTGAGTTTGGCACTGAAACCGCACCATCTGCAGGTGTCACGTATCGCCCCA GTACTATATCCAAGTACATGAGTCTGGTGACTTCTCCAGT GACTGGGAGAACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAGGCGATGCATCGAAGATTAAGACTGAATGATG TTGTTACACATATACTCCCTCCGTTTCATAATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATAAATCTAGACACATATTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATAAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAACGTGTTTGTTTCCCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGGAACAAACAGCCAGTAGCTTGTCGATCTGTTACTAACTTACGATGAAGCATCATCATTATCATCTCATAAAAACTTGTAAT ]
[-] EMBL CB619462 [ GGCTTTGCACAATCTCTGGGTGTCTCATCCCACCCCCAGCCTAGATGGTGAAGAAGATGTCATCTACCTGCTGGCCAAGCCAAAGTGCTTCCACCCCAAGGCGTGGGTTCTTGCTCTCGACACGAGGAGCAGCACGCTGCTAGGCGTGGTTGAGTTTGGCACTGAAATCGCACCATCTGCAGGTGTCACGTATCGCCCCA GTACTATATCCAAGTACATGAGTCTGGTGACTTCTCCAGT GACTGGGAGAACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAGGCGATGCATTGAAGATTAAGACTGAATGATG TTGTTAAACATATACTCCCTCCGTTTCATAATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATGAATCTAGACACATATTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATGAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAACGTGTTTGTTT CCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGGAACAAACAGCCAGTAGCTTGTCGATCTGTTACTAACTTACGATGAAGCATCATCATTATCATCTCATAAAAACTTGTAATGGGATTTTATATTCGTGACTATCACGCACTTTGTTTAAGGGGAGAAGAGAAATC]
[+] EMBL BI811310 [ ttTCACGT TCGCCCCACGGTCTATATCCAAGTACATGAGTCTGGGGACTTCTCCAGTGGACTGGGAGAACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAGGCGATGCATCGAAGATTAAGACTGAATGATGCTTGTTAAACATATACTCCCTCCGTTTCATAATACCAGACTTTCTAGCCTTGCTCATATTTATATATATGTTAATAAATCTAGACACATATTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTATAAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAACGTGTTTGTTTCCCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGG ACCAACAGCCCGT ]
consensusID : consensus_6857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 786 fasta sequence
[AAGGGGCGTAAAGGAAACCGATCTCGGTCATGGCCACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCACACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCTGAACAGCGGTGCCAACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAGGGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGTGTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCAAGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTTCACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCACGCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCGAGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGGCCCAGGGAGCGCGAGTATATGCTCCACCGCTTCGACTCCGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGATGGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCACCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGCGCCATGGGCTGGGTCGATCTCTGGACCGGCATCCTAATCTACGATC]
[+] EMBL CB619461 [AAGGGGCGTAAAGGAAACCGATCTCGGTCATGGCCACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCACACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCTGAACAGCGGTGCCAACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAGGGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGTGTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCAAGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTTCACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCACGCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCGAGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGGCCCAGGGAGCGCGAGTATATGCTCCACCGCTTCGACTCCGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGATGGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCACCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGCGCCATGGGCTGGGTCGATCTCTGGACCGGCATCCTAATCTACGATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6857#0 GATCGATCGATATCGATAGGCAGCAGAAGGGGAGAAAAGGAAACCGATCTCGGTCATGGC 60
consensus_6857#1 --------------------------AAGGGGCGTAAAGGAAACCGATCTCGGTCATGGC 34
****** * *************************
consensus_6857#0 CACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCAC 120
consensus_6857#1 CACGCCCACCACTTTGGTCGCCGCCTCCAGCCATCGCCGTCGTCGCCGGCGTGGATCCAC 94
************************************************************
consensus_6857#0 ACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCT 180
consensus_6857#1 ACCGGCACAGGCACAGGCACAGGCACCGGCACCGGAGGGGGTGCCGGGGTGGATCCTTCT 154
************************************************************
consensus_6857#0 GAACAGCGGTGCCCACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAG 240
consensus_6857#1 GAACAGCGGTGCCAACATCGGCAGCCGCTCCAACGCCACCACCGCCGTCGGTGAGGCGAG 214
************* **********************************************
consensus_6857#0 GGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGT 300
consensus_6857#1 GGACAAGCTGACGATAGAGGTGTCCTTGTGGCCGGCGCAGCCGCCGCACCCCTCCGACGT 274
************************************************************
consensus_6857#0 GTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCA 360
consensus_6857#1 GTTCGTGTGTTGCCCGGGCGTCCGCCACCCCCGCGAATCCGAGATCCTCTTCACGGCCCA 334
************************************************************
consensus_6857#0 AGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTT 420
consensus_6857#1 AGATCTGCTGCTGCTGCGTGTCCCGGTCGCCGCCGGGGCTGCGCCGAGCCTCATCAGCTT 394
************************************************************
consensus_6857#0 CACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCAC 480
consensus_6857#1 CACGGAGTGCGATTACCTCATCTACCGTGCCGCCGCCGGCGACCGTCGTCCGTCGCTCAC 454
************************************************************
consensus_6857#0 GCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCG 540
consensus_6857#1 GCTGCTCCCGAATCCAAAGCCCAACTACTTCCACGACGGGGATGTCGGCATCCTTCCCCG 514
************************************************************
consensus_6857#0 AGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAG--------------------- 579
consensus_6857#1 AGGCGGGGGCGAGTACACGGTCGCGGCCCTGGTTGCTAGGCCCAGGGAGCGCGAGTATAT 574
***************************************
consensus_6857#0 --------------------ACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGAT 619
consensus_6857#1 GCTCCACCGCTTCGACTCCGACGACGCCGGGGGCAGGTGGACCACCAAGACGGTGTGGAT 634
****************************************
consensus_6857#0 GGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCA 679
consensus_6857#1 GGACGACCCGCGGAGGCCTCCCCCTGTGGAGATCCCCATCAACGCAAGGCGGCTCAACCA 694
************************************************************
consensus_6857#0 CCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGTGCCATGGGCTGGGT 739
consensus_6857#1 CCACATCACCACCACCACCATCACGCTCGGCGGCGAGCTGGCCGGCGCCATGGGCTGGGT 754
********************************************* **************
consensus_6857#0 CGATCTCTGGACCGGCATCCTAATCTACGATCTCCTCCATGACGACAAGGACCAAGACCG 799
consensus_6857#1 CGATCTCTGGACCGGCATCCTAATCTACGATC---------------------------- 786
********************************
consensus_6857#0 GCCAACGCTCCGGCACATGCCGCTGCCGCTGCCGATGCACGCCATCACCGGCAACCACGG 859
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 GATGGGCGACAAGCTAGCCTTAGGCTGCCCACGCTCTCTCCGTGGCATTGCCTCTGTCAC 919
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 GAGGCGCGGCAAGGCCTGCCTCAAGCTCGCCGGCGTGCATGTCACCGGAGAGCGCCTCCC 979
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 CTACAACGACGCTGAAACCCAGCTGCCGGCGTTCGCCGTCGACGACTGGACTGTCACGAC 1039
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 ATGGAGCAATGACAAGATGAAGGGCTACTTTGAGGACTGGCAGGAGGATTTCACGATTCG 1099
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 CGGTTCCGAGGTCAGGATTAGCAACGCCATGCGCTCGGATCTGCTGAGATCTGGGTTGCT 1159
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 GTACCGTAAACCGTCACGAGGGGATGGCGATGAGGCTACGGTGGAGGAGCTGGCTTTGCA 1219
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 CAATCTCTGGGTGTCTCATCCCACCCCCAGCCTAGATGGTGAAGAAGATGTCATCTACCT 1279
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 GCTGGCCAAGCCAAAGTGCTTCCACCCCAAGGCGTGGGTTCTTGCTCTCGACACGAGGAG 1339
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 CAGCACGCTGCTAGGCGTGGTTGAGTTTGGCACTGAAACCGCACCATCTGCAGGTGTCAC 1399
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 GTATCGCCCCAGTACTATATCCAAGTACATGAGTCTGGTGACTTCTCCAGTGACTGGGAG 1459
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 AACTTAAAGGATGCTGCTGCTAATCACTGAATCAAGATGGTACTGCTGGCCTGTTTGGAG 1519
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 GCGATGCATCGAAGATTAAGACTGAATGATGTTGTTAAACATATACTCCCTCCGTTTCAT 1579
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 AATACAAGACTTTCTAGCATTGCTCATATTTATATATATGTTAATAAATCTAGACACATA 1639
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 TTTGTATAGATTTACTAACATCTATATGAATATGGACAATACTAAAAAGACTTGCATTAT 1699
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 AAAACGGAGGAAGTATATGTTTACAGGGGTCTTGGCAATTTTGCATTCGGGTGCAAGAAA 1759
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 CGTGTTTGTTTCCCTGCGCTGGTGGTTAGGAGTATTTATGTAAATTTCTCTAGTTGGAAC 1819
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 AAACAGCCAGTAGCTTGTCGATCTGTTACTAACTTACGATGAAGCATCATCATTATCATC 1879
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 TCATAAAAACTTGTAATGGGATTTTATATTCGTGACTATCACGCACTTTGTTTAAGGGGA 1939
consensus_6857#1 ------------------------------------------------------------
consensus_6857#0 GAAGAGAAATC 1950
consensus_6857#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||