cluster # 6859

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Oryza sativa
cluster # 6859 cluster # 6859 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6859#0 length = 776 sequences # 2

consensus_6859#1 length = 537 sequences # 2

consensusID : consensus_6859#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 776
fasta sequence

                              [TCTTTTTATTGCTATTCCAAATTCTAGTGCAGCCTACGTATCTTAACTGAACAACACATAGTCAAATAAAACAAAAATATTTACAGTGATATAAAGACATCAACGAATTGACGCATAGCCAATTGCCATTTGATAACACCAAGTTTAGTTTACAAACGTATCCATAACATAATCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTTCCTTCTCCCTCTTGTCCACCACCACCATAGAGCTGCCGAAAACCTCCGGTTGCGGTGCATCGGCATTCTGCTGTTCCTTCTCCAAACCGCGTGATTCTTCCACTGCCTCAACTTCCTTTTCTTCCACAATCCCTCTCGCTT]

[+] EMBL CB683420             [TCTTTTTATTGCTATTCCAAATTCTAGTGCAGCCTACGTATCTTAACTGAACAACACATAGTCAAATAAAACAAAAATATTTACAGTGATATAAAGACATCAACGAATTGACGCATAGCCAATTGCCATTTGATAACACCAAGTTTAGTTTACAAACGTATCCATAACATAATCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTTCCTTCTCCCTCTTGTCCACCACCACCATAGAGCTGCCGAAAACCTCCGGTTGCGGTGCATCGGCATTCTGCTGTTCCTTCTCCAAACCGCGTGATTCTTCCACTGCCTCAACTTCCTTTTCTTCCACAATCCCTCTCGCTT]
[-] EMBL C96948               [                                                                                                       ttttTTGACGCATAGCCAATTGCCATTTGATAACACCAAGTTTAGTTTACAAACGTATCCATAACATAATCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCGCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCANCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGNTGCC                                                                                                                                                                                                                                                                                                      ]




>consensus_6859#0
TCTTTTTATTGCTATTCCAAATTCTAGTGCAGCCTACGTATCTTAACTGAACAACACATA
GTCAAATAAAACAAAAATATTTACAGTGATATAAAGACATCAACGAATTGACGCATAGCC
AATTGCCATTTGATAACACCAAGTTTAGTTTACAAACGTATCCATAACATAATCAGCACA
GCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTA
TAGAGATACAATCAACACTTCATACCAGGTTGGCACGTTGTTTTTTCAGCCTTATCATCA
TCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTT
CCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTCATG
CTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTG
CCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCC
GTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTC
ACTTGATTCTTCAATGTTCGAAACGGATGCCTCTTCCTTCTCCCTCTTGTCCACCACCAC
CATAGAGCTGCCGAAAACCTCCGGTTGCGGTGCATCGGCATTCTGCTGTTCCTTCTCCAA
ACCGCGTGATTCTTCCACTGCCTCAACTTCCTTTTCTTCCACAATCCCTCTCGCTT

consensusID : consensus_6859#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 537
fasta sequence

                              [TTTTTTTTTTTTTTTAGCCAATTGCCATTTGATANCACCAAGTTTAGTTTACAAACGTATCCCATAACATAATCCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTT]

[-] EMBL AU031547             [TTTTTTTTTTTTTTTAGCCAATTGCCATTTGATANCACCAAGTTTAGTTTACAAACGTATCCCATAACATAATCCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCCACGTTGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTT]
[-] EMBL C26832               [                                                                                                                                                                                                                                        cgCATCATCTTCAGCAANACTGAGCCTCTTCCGNAATTCCGCCTTTAAAGCAGAGCTTGAGTNATTATTGCNCCCNNTCTNCNCTTCATGCTCCCCAAGATCCTTAATCTCATCCTACTCAAGATCCTCTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTANCCTTGCTTGAGTCGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTTGTCACTTGATNCTTCAATGTNCGAAACGGAT       ]




>consensus_6859#1
TTTTTTTTTTTTTTTAGCCAATTGCCATTTGATANCACCAAGTTTAGTTTACAAACGTAT
CCCATAACATAATCCAGCACAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCA
CAAGTAATTGGCAAAAAAGTATAGAGATACAATCAACACTTCATACCAGGTTGGCCACGT
TGTTTTTTCAGCCTTATCATCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCAT
CTTCAGCAACACTGAGCCTCTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTAT
TGCTCCCTCTCTTCTCTTCATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCT
CTTCCTCGGTCGTTGTTCGCTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGT
CGCTTGTCTCATGCTTTGCTCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTT
CTTCAGTGACAGCTTTCTTGTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6859#0      TCTTTTTATTGCTATTCCAAATTCTAGTGCAGCCTACGTATCTTAACTGAACAACACATA 60
consensus_6859#1      ------------------------------------------------------------
                                                                                  

consensus_6859#0      GTCAAATAAAACAAAAATATTTACAGTGATATAAAGACATCAACGAATTGACGCATAGCC 120
consensus_6859#1      -----------------------------------------TTTTTTTTTTTTTTTAGCC 19
                                                                     **      *****

consensus_6859#0      AATTGCCATTTGATAACACCAAGTTTAGTTTACAAACGTATCC-ATAACATAATC-AGCA 178
consensus_6859#1      AATTGCCATTTGATANCACCAAGTTTAGTTTACAAACGTATCCCATAACATAATCCAGCA 79
                      *************** *************************** *********** ****

consensus_6859#0      CAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAG 238
consensus_6859#1      CAGCTAAACCAATTTTATTGGCCACATTTCAGTATCTTGCACAAGTAATTGGCAAAAAAG 139
                      ************************************************************

consensus_6859#0      TATAGAGATACAATCAACACTTCATACCAGGTTGGC-ACGTTGTTTTTTCAGCCTTATCA 297
consensus_6859#1      TATAGAGATACAATCAACACTTCATACCAGGTTGGCCACGTTGTTTTTTCAGCCTTATCA 199
                      ************************************ ***********************

consensus_6859#0      TCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCT 357
consensus_6859#1      TCATCAATCATCCTCGATATCCCAGCTCAAATCCTCATCATCTTCAGCAACACTGAGCCT 259
                      ************************************************************

consensus_6859#0      CTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTC 417
consensus_6859#1      CTTCCGCAATTCCTCCTTTAAAGCAGAGCTTGAGTCATTATTGCTCCCTCTCTTCTCTTC 319
                      ************************************************************

consensus_6859#0      ATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCG 477
consensus_6859#1      ATGCTCCCCAAGATCCTCAATCTCATCCCACTCAAGATCCTCTTCCTCGGTCGTTGTTCG 379
                      ************************************************************

consensus_6859#0      CTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGC 537
consensus_6859#1      CTGCCTAGACACCATGGAGTAGTCACTATCCTTGCTTGAGTCGCTTGTCTCATGCTTTGC 439
                      ************************************************************

consensus_6859#0      TCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTT 597
consensus_6859#1      TCCGTCTTTCACCGCATCATCTCCTGTGCTTGAACGTGGTTCTTCAGTGACAGCTTTCTT 499
                      ************************************************************

consensus_6859#0      GTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTTCCTTCTCCCTCTTGTCCACCAC 657
consensus_6859#1      GTCACTTGATTCTTCAATGTTCGAAACGGATGCCTCTT---------------------- 537
                      **************************************                      

consensus_6859#0      CACCATAGAGCTGCCGAAAACCTCCGGTTGCGGTGCATCGGCATTCTGCTGTTCCTTCTC 717
consensus_6859#1      ------------------------------------------------------------
                                                                                  

consensus_6859#0      CAAACCGCGTGATTCTTCCACTGCCTCAACTTCCTTTTCTTCCACAATCCCTCTCGCTT 776
consensus_6859#1      -----------------------------------------------------------