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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6860 cluster # 6860       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6860#0 length = 1052 sequences # 4  

consensusID : consensus_6860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1052
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGANAACANAAGAGGTAAAGATGATGCAATTTTCATCCCATCAATTTTAACTTAACTGTAANATCCTGACGATAACAACATTATAAGCTGCACTGACTGCATAACGCATTATTACATACAGAAGGCATCGGGGTACAACACAACGCATTAGGAGTACTAACTTCAGGCCACGACAACAACACAAAGCTACACTGCAACATGGCTCCTTGTTATAATATATAAGCTCCTCTTCACTTCTTGTGGATGCTGCAGAGGCAGTTCTCCTCGCCTACGTCTTTGGCGAGGCAGGGAGGCTGGCATGATCCGTCCTGGTACCAGGTCGCCCGCTTCTCCGTCAGCTCGTTCAGGAAGTAGTCCAGCTTGTCGATGGTCACACTGGGCATCACCACGACATGAGCGATGTTGCCCTCGCAGGCGAGCTGCCACCTCCGGACGAACTCCTCGTCCTTGGGCCTTTCGAACACCACGGTGCTGCTC-AGCTCGTTGAGCATGGCGCCGATTCCAGCTTCCTTGAGGCGGTCCTTCAGGTAGTGAGCGTTCCTCAGGCACTTCTGGACCTCCTTCTGGAAGCCCCTGTAGCCTTTCCTGTTCAGGGTGTACCAGAGGAAGATCGGAGCATGGCCGTTCCTACTTCCCATGATCGTCGCATCTCTTGATGCCAGATATTCAACATTGCTAGAAAGACGATTTATGTGCTCCAGTCTTGTTATCTGGACACCACATGGCAT-GGGACATCCTACAAACTTGTGCCCGGAAACGCTCACACTCCCGATGGGCTTCTTAAATGATACTCTAGGTGCCTTCTTGACAAATGTTTCATTAATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGGGGGGGGGCCCGGGCCCAAATTCGCCCTTAAGGAAGCGTATTACCCGCGCCTACTTGGCGGCGGTTTTAACACGCTGGAGATGTGAAAAACCTGGCGGTACCCAACTAAATGGCTTGTGAACAAATTCCCCTTTTCGCGAG]

[-] EMBL AU031600             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGANAACANAAGAGGTAAAGATGATGCAATTTTCATCCCATCAATTTTAACTTAACTGTAANATCCTGACGATAACAACATTATAAGCTGCACTGACTGCATAACGCATTATTACATACAGAAGGCATCGGGGTACAACACAACGCATTAGGAGTACTAACTTCAGGCCACGACAACAACACAAAGCTACACTGCAACATGGCNCCTTGTTATAATATATAAGCNCCTCTTCACTTCTTGTGGATGCTGCAGAGGCAGTTCTCCTCGCCTACGTCTTTGGCGAGGCAGGGAGGCTGGCATGATCCGNCCTGGNACCAGGTCGCCCGCTTCTCCGTCAGCTCGTTCAGGAAGTAGTCCAGCTTGTCGATGGTCACACTGGGCATCACCACGACATGAGCGATGTTGCCCTCGCAGGCGAGCTGCCACCTCCGGACGAACTCCTCGTCCTTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BE040097             [                                                                                 ATTTTCATCCCATCAATTTTAACTTAACTGTAATATCCTGACGATAACAACATTATAAGCTGCACTGACTGCATAACGCATTATTACATACAGAAGGCATCGGGGTACAACACAACGCATTAGGAGTACTAACTTCAGGCCACGACAACAACACAAAGCTACACTGCAACATGGCTCCTTGTTATAATATATAAGCTCCTCTTCACTTCTTGTGGATGCTGCAGAGGCAGTTCTCCTCGCCTACGTCTTTGGCGAGGCAGGGAGGCTGGCATGATCCGTCCTGGTACCAGGTCGCCCGCTTCTCCGTCAGCTCGTTCAGGAAGTAGTCCAGCTTGTCGATGGTCACACTGGGCATCACCACGACATGAGCGATGTTGCCCTCGCAGGCGAGCTGCCACCTCCGGACGAACTCCTCGTCCTTGGGCCTTTCGAACACCACGGTGCTGCTC AGCTCGTTGAGCATGGCGCCGATTCCAGCTTCCTTGAGGCGGTCCTTCAGGTAGTGAGCGTTCCTCAGGCACTTCTGGACCTCCTTCTGGAAGCCCCTGTAGCCTTTCCTGTTCAGGGTGTACCAGAGGAAGATCGGAGCATGGCCGTTCCTACTTCCCATGATCGTCGCATCTTTTGATGCCAGATATT AACATTGCTAGAAAGACGATTTATGTGCTCCAGTCTTGTTATCTGGACACCACATGGGATGGGGACATTCTACAAACTTGGGCCCGGAAACGCTTACACTCCCGATGGGCTTCTTAAATGATACTCTAGGTGCCTTCTTGACAAATGTTTCATTAATTCCAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGGGGGGGGGCCCGGGCCCAAATTCGCCCTTAAGGAAGCGTATTACCCGCGCCTACTTGGCGGCGGTTTTAACACGCTGGAGATGTGAAAAACCTGGCGGTACCCAACTAAATGGCTTGTGAACAAATTCCCCTTTTCGCGAG]
[-] EMBL AU031599             [                                                                                                                                                                           CAGAAGGCATCGGGGTACAACACAACGCATTAGGAGTACTAACTTCAGGCCACGACAACAACACAAAGCTACACTGCAACATGGCTCCTTGTTATAATATATAAGCTCCTCTTCACTTCTTGTGGATGCTGCAGAGGCAGTTCTCCTCGCCTACGTCTTTGGCGAGGCAGGGAGGCTGGCATGATCCGTCCTGGTACCAGGTCGCCCGCTTCTCCGTCAGCTCGTTCAGGAAGTAGTCCAGCTTGTCGATGGTCACACTGGGCATCACCACGACATGAGCGATGTTGCCCTCGCAGGCGAGCTGCCACCTCCGGACGAACTCCTCGTCCTTGGGCCTTTCGAACACCACGGTGCTGCTC AGCTCGTTGAGCATGGCGCCGATTCCAGCTTCCTTGAGGCGGTCCTTCAGGTAGTGAGCGTTCCTCAGGCACTTCTGGACCTCCTTCTGGAAGCCCCTGTAGCCTTTCCTGTTCAGGGTGTACCAGAGGAAGATCGGAGCATGGCCGTTCCTACTTCCCATGATCGTCGCATCTCTTGATGCCAGATATTCAACATTGCTAGAAAGACGATTTATGTGCTCCAGTCTTGTTATCTGGACACCACATGGCAT GGGACATCCTACAAACTTGTGCCCGGAAACGCTCACACTCCCGATAGGCTTCTTAAATGATACCTTAGGTGCCTTCTTGACAA                                                                                                                                                                                            ]
[-] EMBL OSEN31229            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CCTTTCGAACACCAAGGTGCTGCTCAAGCTCGTTGAGCATGGCACCGATTCCAGCTTCCTTGAGACGGTCCTTCAGGTAGTGAACGTTCCTCAGGCACTTCTGGACCTCCTTCTGGAAGCCCCTGTAGCCTTTCCTGTTCAGGGTGTACCAGAGGAAGAACGGAGCATGGCCGTTCCTACTTCCCATGAACGTCGCATCTCTTGATGCCAGATATTCAAAATTGCTAAAAAAACGATTTATGTGCTCCAGTCTTGTTATCTGGACACCACATGGCAT GGGACATCCTACAAACTTGTGCCCGGAAAAGCTCAAACTC                                                                                                                                                                                                                                       ]


>consensus_6860#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGANAAC ANAAGAGGTAAAGATGATGCAATTTTCATCCCATCAATTTTAACTTAACTGTAANATCCT GACGATAACAACATTATAAGCTGCACTGACTGCATAACGCATTATTACATACAGAAGGCA TCGGGGTACAACACAACGCATTAGGAGTACTAACTTCAGGCCACGACAACAACACAAAGC TACACTGCAACATGGCTCCTTGTTATAATATATAAGCTCCTCTTCACTTCTTGTGGATGC TGCAGAGGCAGTTCTCCTCGCCTACGTCTTTGGCGAGGCAGGGAGGCTGGCATGATCCGT CCTGGTACCAGGTCGCCCGCTTCTCCGTCAGCTCGTTCAGGAAGTAGTCCAGCTTGTCGA TGGTCACACTGGGCATCACCACGACATGAGCGATGTTGCCCTCGCAGGCGAGCTGCCACC TCCGGACGAACTCCTCGTCCTTGGGCCTTTCGAACACCACGGTGCTGCTCAGCTCGTTGA GCATGGCGCCGATTCCAGCTTCCTTGAGGCGGTCCTTCAGGTAGTGAGCGTTCCTCAGGC ACTTCTGGACCTCCTTCTGGAAGCCCCTGTAGCCTTTCCTGTTCAGGGTGTACCAGAGGA AGATCGGAGCATGGCCGTTCCTACTTCCCATGATCGTCGCATCTCTTGATGCCAGATATT CAACATTGCTAGAAAGACGATTTATGTGCTCCAGTCTTGTTATCTGGACACCACATGGCA TGGGACATCCTACAAACTTGTGCCCGGAAACGCTCACACTCCCGATGGGCTTCTTAAATG ATACTCTAGGTGCCTTCTTGACAAATGTTTCATTAATTCCAAAAAAAAAAAAAAAAAAAA AAAAAAACTCGGGGGGGGGCCCGGGCCCAAATTCGCCCTTAAGGAAGCGTATTACCCGCG CCTACTTGGCGGCGGTTTTAACACGCTGGAGATGTGAAAAACCTGGCGGTACCCAACTAA ATGGCTTGTGAACAAATTCCCCTTTTCGCGAG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)