These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6861#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1115 fasta sequence [GCATCCCCAACCCCAACCCCTCCCCGCCTTGCGCCGCCGCCGCCGCCGCCACCGGCGCCGGCGATCCTCCGATGGGCGCCTCGGCCTCCGTCCTCTCCCTTCCCACGGCGGCCGCCATCCCGGGAGCCGCCACCGCTATAGCTGGCGCCGCGGGCTGCTTCGCCCTCGGCTACTTCCTCGCCCTCAGCCGCTTCCCCCGCCAGGTCGTCGCTGCCTCCCCCGCTTCCGGGGAGACCTCGGACGAGGATTCCGAGGAGGATTCGGAAGAAGATGATGATGACGAAAACTCCGGCCGCAGCCGGGCGGCGAAGCGGGCGCCCAAGCGCGCCGGGCTCCGGCTGCTGTTCTGGGCGCGCAACGTGGTGACCAAGTCCGACTCGGCGAAGGAGGCCGAGAGGGCCAAGGCACGGACCGCGGCTAGCCCCCTGGAGGTCGAGAATCTCGCTGAGATTATAGAGGATTTCAAGATGGTGCTGGTTGTGAGGAATGATTTGAAGATGGGGAAGGGGAAGATTGCCGCGCAATGCAGCCATGCAACGTTGGGTCTGTTTAAAAAACTCCAACAGAGAGCTCCAAAATCATTAAGAAGGTGGGAGAGGTGTGGTCAAGTTAAGGTGGTCGTGAAAATTGAAAGCGAGGAAGATATGCTTGTTTTACAAGGAAGAGCAAAGTCTTTGAATATCCCAACACACATAACTATTGATGCTGGAAGAACACAGATCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATGTCACCGGTGGTCTGAAGCTTCTATAAATTCTTGTTCTCGGTATCCTCAGACATAGGAATTTGAAGACAAACGCTTAAATTTGACAAACCACATTGGCTGCTGAAGAACGAACCCTGAAACTCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAAGAGGCTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA] [+] EMBL AK071125 [GCATCCCCAACCCCAACCCCTCCCCGCCTTGCGCCGCCGCCGCCGCCGCCACCGGCGCCGGCGATCCTCCGATGGGCGCCTCGGCCTCCGTCCTCTCCCTTCCCACGGCGGCCGCCATCCCGGGAGCCGCCACCGCTATAGCTGGCGCCGCGGGCTGCTTCGCCCTCGGCTACTTCCTCGCCCTCAGCCGCTTCCCCCGCCAGGTCGTCGCTGCCTCCCCCGCTTCCGGGGAGACCTCGGACGAGGATTCCGAGGAGGATTCGGAAGAAGATGATGATGACGAAAACTCCGGCCGCAGCCGGGCGGCGAAGCGGGCGCCCAAGCGCGCCGGGCTCCGGCTGCTGTTCTGGGCGCGCAACGTGGTGACCAAGTCCGACTCGGCGAAGGAGGCCGAGAGGGCCAAGGCACGGACCGCGGCTAGCCCCCTGGAGGTCGAGAATCTCGCTGAGATTATAGAGGATTTCAAGATGGTGCTGGTTGTGAGGAATGATTTGAAGATGGGGAAGGGGAAGATTGCCGCGCAATGCAGCCATGCAACGTTGGGTCTGTTTAAAAAACTCCAACAGAGAGCTCCAAAATCATTAAGAAGGTGGGAGAGGTGTGGTCAAGTTAAGGTGGTCGTGAAAATTGAAAGCGAGGAAGATATGCTTGTTTTACAAGGAAGAGCAAAGTCTTTGAATATCCCAACACACATAACTATTGATGCTGGAAGAACACAGATCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATGTCACCGGTGGTCTGAAGCTTCTATAAATTCTTGTTCTCGGTATCCTCAGACATAGGAATTTGAAGACAAACGCTTAAATTTGACAAACCACATTGGCTGCTGAAGAACGAACCCTGAAACTCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAAGAGGCTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCC ] [+] EMBL CA757102 [ ATGCTGGAAGAACACAGATCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATGTCACCGGTGGTCTGAAGCTTCTATAAATTCTTGTTCTCGGTATCCTCAGACATAGGAATTTGAAGACAAACGCTTAAATTTGACAAACCACATTGGCTGCTGAAGAACGAACCCTGAAACTCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAGGAGGCTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGATTTTTTCTTTTTTCAGTTTTCCAATGTGCATTTGTTGCTGAGGACGTCTGAACTCTTGAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAA ] [+] EMBL OSR00991A [ ACCCTGAAACTCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAAGAGGCTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGG TTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA] consensusID : consensus_6861#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [GGAGNTCGCCCCACGGCNTCCGGAAGAACGACCCNTGAAACTCATCGGCTNACTCAATCTTGTTGTTCGANTATTTACCANTGAAGAGGNTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA] [+] EMBL AU031641 [GGAGNTCGCCCCACGGCNTCCGGAAGAACGACCCNTGAAACTCATCGGCTNACTCAATCTTGTTGTTCGANTATTTACCANTGAAGAGGNTTAATTTCACTTTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTCTTTCTTCAGTTTTCCACTCTGCATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAAGGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6861#0 GCATCCCCAACCCCAACCCCTCCCCGCCTTGCGCCGCCGCCGCCGCCGCCACCGGCGCCG 60 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 GCGATCCTCCGATGGGCGCCTCGGCCTCCGTCCTCTCCCTTCCCACGGCGGCCGCCATCC 120 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 CGGGAGCCGCCACCGCTATAGCTGGCGCCGCGGGCTGCTTCGCCCTCGGCTACTTCCTCG 180 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 CCCTCAGCCGCTTCCCCCGCCAGGTCGTCGCTGCCTCCCCCGCTTCCGGGGAGACCTCGG 240 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 ACGAGGATTCCGAGGAGGATTCGGAAGAAGATGATGATGACGAAAACTCCGGCCGCAGCC 300 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 GGGCGGCGAAGCGGGCGCCCAAGCGCGCCGGGCTCCGGCTGCTGTTCTGGGCGCGCAACG 360 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 TGGTGACCAAGTCCGACTCGGCGAAGGAGGCCGAGAGGGCCAAGGCACGGACCGCGGCTA 420 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 GCCCCCTGGAGGTCGAGAATCTCGCTGAGATTATAGAGGATTTCAAGATGGTGCTGGTTG 480 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 TGAGGAATGATTTGAAGATGGGGAAGGGGAAGATTGCCGCGCAATGCAGCCATGCAACGT 540 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 TGGGTCTGTTTAAAAAACTCCAACAGAGAGCTCCAAAATCATTAAGAAGGTGGGAGAGGT 600 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 GTGGTCAAGTTAAGGTGGTCGTGAAAATTGAAAGCGAGGAAGATATGCTTGTTTTACAAG 660 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 GAAGAGCAAAGTCTTTGAATATCCCAACACACATAACTATTGATGCTGGAAGAACACAGA 720 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 TCGCACCAAATTCAAGAACAGTCATGGCTATTCTTGGGCCAGCTGACATGGTCGATGATG 780 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 TCACCGGTGGTCTGAAGCTTCTATAAATTCTTGTTCTCGGTATCCTCAGACATAGGAATT 840 consensus_6861#1 ------------------------------------------------------------ consensus_6861#0 TGAAGACAAACGCTTAAATTTGACAAACCACATTGGCTGCTGAAGAACGAACCCTGAAAC 900 consensus_6861#1 -------------------GGAGNTCGCCCCACGGCNTCCGGAAGAACGACCCNTGAAAC 41 ** ** * * * ********* ** ****** consensus_6861#0 TCATCGGCTCACTCAATCTTGTTGTTCGAGTATTTACCAGTGAAGAGGCTTAATTTCACT 960 consensus_6861#1 TCATCGGCTNACTCAATCTTGTTGTTCGANTATTTACCANTGAAGAGGNTTAATTTCACT 101 ********* ******************* ********* ******** *********** consensus_6861#0 TTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTTTCTTTCTTCAGTTTTCCACTCTG 1020 consensus_6861#1 TTTACTTGTATGAACTGTCTTCGGAGCAATGGTTTTT-CTTTCTTCAGTTTTCCACTCTG 160 ************************************* ********************** consensus_6861#0 CATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAA 1080 consensus_6861#1 CATTTGTTGCTGTGGACGTCTGAACTCTTAAATTTTTCTGTAACATATTAGATAACAAAA 220 ************************************************************ consensus_6861#0 GGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA 1115 consensus_6861#1 GGGTAAAAGACTTCCTACTTATCTTAAAAAAAAAA 255 *********************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||