cluster # 6863

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6863 cluster # 6863 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6863#0 length = 750 sequences # 2

consensus_6863#1 length = 346 sequences # 2

consensusID : consensus_6863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 750
fasta sequence

                              [CTTGTCCGCATTGCCCTCGAAACGGAGCATGAGGATTGGTTCCGTCAACGCGAACCAAGAAATTCTACTACCGCNGNAATGGAANTTGTTTGGGANCGAAAAGGAGGGAGTTNCCGTNTACGTCGACGTGNCTCNCAATGGTACTTGCTGGGTGATCAAACTTTGCCGACCAGATCTACCGCTGGAAATGGACATGNCTGGGACCACATGCTTGGACCCGCNCGCACTGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGCCAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGNATCGATGGCGCTGCCACCCAGATCTCCCGCCGGTGACGATGGCACTGTGATGTGCGTCAACGCCCAGCAACAGATCTACTACCG-CAGGGGTGTGCATGGCGCGTGGCAGCAGCTCGATGNCG-CCGCCGT-CCAGGTCGACTGCTTCGATCACAACACCTACTTGGCCGTCAACGCCGCCGACGAGATCTACCTCCGCCAGCACGGCGCCTGGGTCCGTCAGCCTGGAGCCTGCAAGCACGCCTCGATCGGTGGCAACGACTACCGCCGCGTCTGCTGCACCAACGGCGCCCACGGAATCTACACTCATGGTCATTAATAAGCTCACCCCGAGCTCGCCGCCCCGCACAACTGATCAGTTGTGGTCTTGTGGAGGAGAATAGTATTCATGCCTGTGTATTCATTGAATAAAAGTGTCTGTACTTGTACCCCAAAAAA]

[+] EMBL AU031676             [CTTGTCCGCATTGCCCTCGAAACGGAGCATGAGGATTGGTTCCGTCAACGCGAACCAAGAAATTCTACTACCGCNGNAATGGAANTTGTTTGGGANCGAAAAGGAGGGAGTTNCCGTNTACGTCGACGTGNCTCNCAATGGTACTTGCTGGGTGATCAAACTTTGCCGACCAGATCTACCGCTGGAAATGGACATGNCTGGGACCACATGCTTGGACCCGCNCGCACTGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGCCAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGNATCGATGGCGCTGCCACCCAGATCTCCCGCCGGTGACGATGGCACTGTGATGTGCGTCAACGCCCAGCAACAGATCTACTACCG CAGGGGTGTGCATGGCGCGTGGCAGCAGCTCGATGNCG CCGCCGT CCAGGTCGACTGCTTCGATCACAACACCTACTTGGCCGTCAACGCCGCCGACGAGATCTACCTCCGCCAGCACGGCGCCTGGGTCCGTCAGCCTGGAGCCTGCAAGCACGCCTCGATCGGTGGCAACGACTACCGCCGCGTCTGCTGCACCAACGGCGCCCACGGAATCTACACTCATGGTCATTAATAAGCTCACCCCGAGCTCGCCGCCCCGCACAACTGATCAGTTGTGGTCTTGTGGAGGAGAATAGTATTCATGCCTGTGTATTCATTGAATAAAAGTGTCTGTACTTGTACCCCAAAAAA]
[+] EMBL AU031662             [                                                                                                                                                                                                                                                                                                                  TGGGCCCGCATCGATGGCGCTGCCACCCAGATCT CCGCCGGTGACGATGGCACTGTGATGTGCGTCAACGCCCAGCAACAGATCTACTACCGCCAGGGGTGTGCATGGCGCGTGGCAGCAGCTCGATGGCGCCCGCCGTCCCAGGTCGACTGCTTCGATCACAACACCTACTTGGCCGTCAACGCCGCCGACGAGATCTACCTCCGCCAGCACGGCGCCTGGGTCCGTCAGCCTGGAGCCTGCAAGCACGCCTCGATCGGTGGCAACGACTACCGCCGCGTCTGCTGCACCAACGGCGCCCACGGAATCTACACTCATGGTCATTAATAAGCTCACCCCGAGCTCGCCGCCCCGCACAACTGATCAGTTGTGGTCTTGTGGAGGAGAATAGTATTCATGCCTGTGTATTCATTGAATAAAAGTGTCTGTACTTGTACCCCAAAAAA]




>consensus_6863#0
CTTGTCCGCATTGCCCTCGAAACGGAGCATGAGGATTGGTTCCGTCAACGCGAACCAAGA
AATTCTACTACCGCNGNAATGGAANTTGTTTGGGANCGAAAAGGAGGGAGTTNCCGTNTA
CGTCGACGTGNCTCNCAATGGTACTTGCTGGGTGATCAAACTTTGCCGACCAGATCTACC
GCTGGAAATGGACATGNCTGGGACCACATGCTTGGACCCGCNCGCACTGTTGGTGTTGGT
TCCCGCAACGACGTCTGGGTCACCAACGCCAACCACGAGATCTACCACTGCAACGGAGAT
GGCAACTGGGCCCGNATCGATGGCGCTGCCACCCAGATCTCCCGCCGGTGACGATGGCAC
TGTGATGTGCGTCAACGCCCAGCAACAGATCTACTACCGCAGGGGTGTGCATGGCGCGTG
GCAGCAGCTCGATGNCGCCGCCGTCCAGGTCGACTGCTTCGATCACAACACCTACTTGGC
CGTCAACGCCGCCGACGAGATCTACCTCCGCCAGCACGGCGCCTGGGTCCGTCAGCCTGG
AGCCTGCAAGCACGCCTCGATCGGTGGCAACGACTACCGCCGCGTCTGCTGCACCAACGG
CGCCCACGGAATCTACACTCATGGTCATTAATAAGCTCACCCCGAGCTCGCCGCCCCGCA
CAACTGATCAGTTGTGGTCTTGTGGAGGAGAATAGTATTCATGCCTGTGTATTCATTGAA
TAAAAGTGTCTGTACTTGTACCCCAAAAAA

consensusID : consensus_6863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 346
fasta sequence

                              [GTCTTTGAACTGGTCACAACAACCTGGAGCTGCTGTCCGCATTGCCTCGAACGAGCATGAGGATTGGTGCGTCAACGCGAACCAAGAAATCTACTACCGCCGCAATGGAGGTAAGTTGGGAACGCAAGGAGGGAGCTGCCGTCTACGTCGACGTGGCTCGCGATGGTACCTGCTGGGTGATCAACTCTGCCGACCAGATCTACCGCTGGAATGGACATGGCTGGGACCACATGCCTGGAGCCGCGCGCACNGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGCCAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGCATCGATGG]

[+] EMBL OSR03711A            [GTCTTTGAACTGGTCACAACAACCTGGAGCTGCTGTCCGCATTGCCTCGAACGAGCATGAGGATTGGTGCGTCAACGCGAACCAAGAAATCTACTACCGCCGCAATGGAGGTAAGTTGGGAACGCAAGGAGGGAGCTGCCGTCTACGTCGACGTGGCTCGCGATGGTACCTGCTGGGTGATCAACTCTGCCGACCAGATCTACCGCTGGAATGGACATGGCTGGGACCACATGCCTGGAGCCGCGCGCACNGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGCCAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGCATCGATGG]
[+] EMBL OSR04701A            [GTCTTTGAACTGGTCACAACAACCTGGAGCTGCTGTCCGCATTGCCTCGAACGAGCATGAGGATTGGTGCGTCAACGCGAACCAAGAAATCTACTACCGCCGCAATGGAGGT GGTTGGGAACGCAAGGAGGGAGCTGCCGTCTACGTCGACGTGGCTCGCGATGGTACCTGCTGGGTGATCAACTCTGCCGACCAGATCTACCGCTGGAATGGACATGGCTGGGACCACATGCCTGGAGCCGCGCGCACTGTTGGTGTTGGTTCCCGCAACGACGTCTGG                                                                 ]




>consensus_6863#1
GTCTTTGAACTGGTCACAACAACCTGGAGCTGCTGTCCGCATTGCCTCGAACGAGCATGA
GGATTGGTGCGTCAACGCGAACCAAGAAATCTACTACCGCCGCAATGGAGGTAAGTTGGG
AACGCAAGGAGGGAGCTGCCGTCTACGTCGACGTGGCTCGCGATGGTACCTGCTGGGTGA
TCAACTCTGCCGACCAGATCTACCGCTGGAATGGACATGGCTGGGACCACATGCCTGGAG
CCGCGCGCACNGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGCCAACCACG
AGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGCATCGATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6863#0      -------------------------------CTTGTCCGCATTGCCCTCGAAACGGAGCA 29
consensus_6863#1      GTCTTTGAACTGGTCACAACAACCTGGAGCTGCTGTCCGCATTGCC-TCGAA--CGAGCA 57
                                                       ************* *****   *****

consensus_6863#0      TGAGGATTGGTTCCGTCAACGCGAACCAAGAAATTCTACTACCGCNGNAATGGAANTTGT 89
consensus_6863#1      TGAGGATTGGTGC-GTCAACGCGAACCAAGAAAT-CTACTACCGCCGCAATGGAGGTAAG 115
                      *********** * ******************** ********** * ******  *   

consensus_6863#0      TTGGGANCGAAAAGGAGGGAGTTNCCGTNTACGTCGACGTGNCTCNCAATGGTACTTGCT 149
consensus_6863#1      TTGGGAACGCAA-GGAGGGAGCTGCCGTCTACGTCGACGTGGCTCGCGATGGTACCTGCT 174
                      ****** ** ** ******** * **** ************ *** * ******* ****

consensus_6863#0      GGGTGATCAAACTTTGCCGACCAGATCTACCGCTGGAAATGGACATGNCTGGGACCACAT 209
consensus_6863#1      GGGTGATCAA-CTCTGCCGACCAGATCTACCGCTGGAA-TGGACATGGCTGGGACCACAT 232
                      ********** ** ************************ ******** ************

consensus_6863#0      GCTTGGACCCGCNCGCACTGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGC 269
consensus_6863#1      GCCTGGAGCCGCGCGCACNGTTGGTGTTGGTTCCCGCAACGACGTCTGGGTCACCAACGC 292
                      ** **** **** ***** *****************************************

consensus_6863#0      CAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGNATCGATGGCGCTGC 329
consensus_6863#1      CAACCACGAGATCTACCACTGCAACGGAGATGGCAACTGGGCCCGCATCGATGG------ 346
                      ********************************************* ********      

consensus_6863#0      CACCCAGATCTCCCGCCGGTGACGATGGCACTGTGATGTGCGTCAACGCCCAGCAACAGA 389
consensus_6863#1      ------------------------------------------------------------
                                                                                  

consensus_6863#0      TCTACTACCGCAGGGGTGTGCATGGCGCGTGGCAGCAGCTCGATGNCGCCGCCGTCCAGG 449
consensus_6863#1      ------------------------------------------------------------
                                                                                  

consensus_6863#0      TCGACTGCTTCGATCACAACACCTACTTGGCCGTCAACGCCGCCGACGAGATCTACCTCC 509
consensus_6863#1      ------------------------------------------------------------
                                                                                  

consensus_6863#0      GCCAGCACGGCGCCTGGGTCCGTCAGCCTGGAGCCTGCAAGCACGCCTCGATCGGTGGCA 569
consensus_6863#1      ------------------------------------------------------------
                                                                                  

consensus_6863#0      ACGACTACCGCCGCGTCTGCTGCACCAACGGCGCCCACGGAATCTACACTCATGGTCATT 629
consensus_6863#1      ------------------------------------------------------------
                                                                                  

consensus_6863#0      AATAAGCTCACCCCGAGCTCGCCGCCCCGCACAACTGATCAGTTGTGGTCTTGTGGAGGA 689
consensus_6863#1      ------------------------------------------------------------
                                                                                  

consensus_6863#0      GAATAGTATTCATGCCTGTGTATTCATTGAATAAAAGTGTCTGTACTTGTACCCCAAAAA 749
consensus_6863#1      ------------------------------------------------------------
                                                                                  

consensus_6863#0      A 750
consensus_6863#1      -