cluster # 6864

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Oryza sativa
cluster # 6864 cluster # 6864 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6864#0 length = 461 sequences # 3

consensus_6864#1 length = 446 sequences # 1

consensusID : consensus_6864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 461
fasta sequence

                              [CACCCAAAGAATCGCCACGGCGGCNAGCACCGATCGAGATCAAGTACCAAGGGTACTGCATGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCATGGACTACGTGATGATACACATAACACATGGATTTCCACATCATGCATTCGGGTTGCAACGGAATTGGGTTGGATATCATCTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATTGGATATATATCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTTCAGTGTGATCGAGTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCATGTTTGCTTCATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAATAATAATAAAGTTTGAATGAAAAAAATATGCTCCAAAAAAAA]

[+] EMBL AU172346             [CACCCAAAGAATCGCCACGGCGGCGAGCACCGATCGAGATCAAGTACCAAGGGTACTGCATGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCATGGACTACGTGATGATACACATAACACATGGATTTCCNCATCATGCATTCGGGTTGCAACGGAATTGGGTTGGATATCATNTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATTGGATATATATCCGCCCATTCCTAGCTTCATNTTAATAATAAGCAGTTTCAGTGTGATCGAGTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCATGTTTGCTTCATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAATAATAATAAAGTTTGAATGAAAAAAA                ]
[+] EMBL AU092958             [         AATCGCCACGGCGNCNAGCACCNATCGAGATCAAGTACCAAGGGTACTGCATGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCATGGACTACGTGATGATACACATAACACATGGATTTCCACATCATGCATTCGGGTTGCAACGGAATTGGGTTGGATATCATCTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATTGGATATATATCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTTCAGTGTGATCGAGTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCATGTTTGCTTCATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAATAATAATAAAGTTTGAATGAAGTTTATATGCTCCAAAAAAAA]
[+] EMBL AU092039             [         AATCGCCACGGCGGCNAGCACCGATCGAGATCAAGTACCAAGGGTACTGCATGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCATGGACTACGTGATGATACACATNACACATGGATTTCCACATCATGCATTCGGGTTGCAACGGAATTGGGTTGGATATCATCTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATTGGATATATATCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTTCAGTGTGATCGAGTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCATGTTTGCTTCATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAATAATAATAAAGTTTGAATGAAAAAAAaa              ]




>consensus_6864#0
CACCCAAAGAATCGCCACGGCGGCNAGCACCGATCGAGATCAAGTACCAAGGGTACTGCA
TGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCAT
GGACTACGTGATGATACACATAACACATGGATTTCCACATCATGCATTCGGGTTGCAACG
GAATTGGGTTGGATATCATCTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATT
GGATATATATCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTTCAGTGTGATCGA
GTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCAT
GTTTGCTTCATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAAT
AATAATAAAGTTTGAATGAAAAAAATATGCTCCAAAAAAAA

consensusID : consensus_6864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 446
fasta sequence

                              [AATCGCCACGGCGGCNAGCACCNATCGAGATCAAGTACCAAGGGTACTGCATGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCATGGACTACGTGATGATACACATAACACATGGATTTCCACATCATGCATTCGGGTTGCAACGGAATTGGGTTGGATATCATCTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATTGGATATATATCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTTCAGTGTGATCGAGTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCATGTTTGCTTCATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAATAATAATAAAGTTTGAATGAAGTTTATAAAAAAAAA]

[+] EMBL C96744               [AATCGCCACGGCGGCNAGCACCNATCGAGATCAAGTACCAAGGGTACTGCATGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCATGGACTACGTGATGATACACATAACACATGGATTTCCACATCATGCATTCGGGTTGCAACGGAATTGGGTTGGATATCATCTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATTGGATATATATCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTTCAGTGTGATCGAGTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCATGTTTGCTTCATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAATAATAATAAAGTTTGAATGAAGTTTATAAAAAAAAA]




>consensus_6864#1
AATCGCCACGGCGGCNAGCACCNATCGAGATCAAGTACCAAGGGTACTGCATGATTCCCC
GAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCATGGACTACGT
GATGATACACATAACACATGGATTTCCACATCATGCATTCGGGTTGCAACGGAATTGGGT
TGGATATCATCTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATTGGATATATA
TCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTTCAGTGTGATCGAGTCTGTGTG
TACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCATGTTTGCTTC
ATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAATAATAATAAA
GTTTGAATGAAGTTTATAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6864#0      CACCCAAAGAATCGCCACGGCGGCNAGCACCGATCGAGATCAAGTACCAAGGGTACTGCA 60
consensus_6864#1      ---------AATCGCCACGGCGGCNAGCACCNATCGAGATCAAGTACCAAGGGTACTGCA 51
                               ********************** ****************************

consensus_6864#0      TGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCAT 120
consensus_6864#1      TGATTCCCCGAACAGGTCAAGCTTTCATTTTATCGCATATTTGGGTATCCGGAAATCCAT 111
                      ************************************************************

consensus_6864#0      GGACTACGTGATGATACACATAACACATGGATTTCCACATCATGCATTCGGGTTGCAACG 180
consensus_6864#1      GGACTACGTGATGATACACATAACACATGGATTTCCACATCATGCATTCGGGTTGCAACG 171
                      ************************************************************

consensus_6864#0      GAATTGGGTTGGATATCATCTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATT 240
consensus_6864#1      GAATTGGGTTGGATATCATCTGAACTGCATTTAATTTCATGATCGGATTCAATTCAAATT 231
                      ************************************************************

consensus_6864#0      GGATATATATCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTTCAGTGTGATCGA 300
consensus_6864#1      GGATATATATCCGCCCATTCCTAGCTTCATCTTAATAATAAGCAGTTTCAGTGTGATCGA 291
                      ************************************************************

consensus_6864#0      GTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCAT 360
consensus_6864#1      GTCTGTGTGTACTGTAATGCTGTGTTCTGCATGTCTGTGTAGTCGAGTTGAGTCCATCAT 351
                      ************************************************************

consensus_6864#0      GTTTGCTTCATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAAT 420
consensus_6864#1      GTTTGCTTCATTCTGTAATTCTGCATGATCTTCAGACGCTCTGCATGAGCGAGTAGTAAT 411
                      ************************************************************

consensus_6864#0      AATAATAAAGTTTGAATGAAAAAAATATGCTCCAAAAAAAA 461
consensus_6864#1      AATAATAAAGTTTGAATGAAGTTTATA------AAAAAAAA 446
                      ********************    ***      ********