|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6865#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[CTTTTTTTTTATATAATTTGCGCCGGAACATACCTAAATAAAAGTACAGCATTCAAGTACAAAATGTATGTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACTAATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCGTGTAATACTTTGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGTGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCAAATAAACGAACTACATTTCATTTTTTGTGATTCTAAAAGTGAAATTTAGTTCATTTAGTTGAACTAGTGTGGGTAAAGGAGTATCCACGGGTCAGCCCACACTCATCCCTAGCCAACTAGTGAAGTGTATGTCTAAGTTCCTAATCTTTGTTTACATCGGCGTCAGGCCCAATTCATGAGTAAGAGAGGTTGAAACATCTGTCGGATTGGCTTCAACCTCAGTATACAGTCAGCCTAAGAGGTAGCATGGTTAGAAGTCAACCTTCAAAATTATACAAGCATCTATGTGCACCACCACTAATTTCAGAGCTGATAATTTTGGTCACTTGGACATGCACAATCACACAGGTGGAGGTGGAGGTGGAGGTGGAGTTGATCCTTCGTTATCTTTCTTTCCCGGTAAACACCTTGAGATGTAAGTTTTCAATTCAGTTTGGGGAACCGGTATGAACTTTCCAGAAAAAGCCAGGGGCCAACTCACAAATCCAATACCAACAGAAACAAGCCAAAG]
[+] EMBL CB634745 [CTTTTTTTTTATATAATTTGCGCCGGAACATACCTAAATAAAAGTACAGCATTCAAGTACAAAATGTATGTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACTAATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCGTGTAATACTTTGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGTGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCAAATAAACGAACTACATTTCATTTTTTGTGATTCTAAAAGTGAAATTTAGTTCATTTAGTTGAACTAGTGTGGGTAAAGGAGTATCCACGGGTCAGCCCACACTCATCCCTAGCCAACTAGTGAAGTGTATGTCTAAGTTCCTAATCTTTGTTTACATCGGCGTCAGGCCCAATTCATGAGTAAGAGAGGTTGAAACATCTGTCGGATTGGCTTCAACCTCAGTATACAGTCAGCCTAAGAGGTAGCATGGTTAGAAGTCAACCTTCAAAATTATACAAGCATCTATGTGCACCACCACTAATTTCAGAGCTGATAATTTTGGTCACTTGGACATGCACAATCACACAGGTGGAGGTGGAGGTGGAGGTGGAGTTGATCCTTCGTTATCTTTCTTTCCCGGTAAACACCTTGAGATGTAAGTTTTCAATTCAGTTTGGGGAACCGGTATGAACTTTCCAGAAAAAGCCAGGGGCCAACTCACAAATCCAATACCAACAGAAACAAGCCAAAG]
consensusID : consensus_6865#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 667 fasta sequence
[TCCAGACATCTCCGCGTAATACTTTGGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCAAGACTGGCCACAGGCCAACCCCATCAGGTCACTCAATTGCACCCCACTCTCAGTCCCAAATCAAACGCAACTCACCATTTCCATTATTTGTGCATTCCTCAAACAGTGCACACATTTGCAGTTCCATTTCAGTTGCAACTCAGATGTGGGTCACACAGGCAGTCATCCCACGGGGTCAGCCCACCACTCCATCCCTCAGCCCAACTCAGTGCACAGGTTGTCATTGTCCTCACAGTTCCTCAATCTTTTGTTTCACCATCGGCTGTCCAGGCCCCAATATCCATTGCAGTCACAGCAGCAGGCATTGCACCACCATCTGTCGGGCATAGGCTTTCCAACCTCCCAGTCATCACCAGTCCAGCCCTCAACGCAGGTCAGCCATTGGTTACAGCACAGTCCACACCTTTCCACACACATTTCATACCACAGCCATCTCATAGTTAGCACCCAACCACTCACATTTCCAGCAGCTGCATCACATTTAGTGGTCCACTATGGCACCATTGCACCAATCCACCACCAAGGTGGCAGGTTGGCAGGTGGCAAGGTGGCAGTTTGCATCCTATCGCTACATCTTTCCTTTCCCCCTGGAACA]
[-] EMBL BI803241 [TCCAGACATCTCCGCGTAATACTTTGGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCAAGACTGGCCACAGGCCAACCCCATCAGGTCACTCAATTGCACCCCACTCTCAGTCCCAAATCAAACGCAACTCACCATTTCCATTATTTGTGCATTCCTCAAACAGTGCACACATTTGCAGTTCCATTTCAGTTGCAACTCAGATGTGGGTCACACAGGCAGTCATCCCACGGGGTCAGCCCACCACTCCATCCCTCAGCCCAACTCAGTGCACAGGTTGTCATTGTCCTCACAGTTCCTCAATCTTTTGTTTCACCATCGGCTGTCCAGGCCCCAATATCCATTGCAGTCACAGCAGCAGGCATTGCACCACCATCTGTCGGGCATAGGCTTTCCAACCTCCCAGTCATCACCAGTCCAGCCCTCAACGCAGGTCAGCCATTGGTTACAGCACAGTCCACACCTTTCCACACACATTTCATACCACAGCCATCTCATAGTTAGCACCCAACCACTCACATTTCCAGCAGCTGCATCACATTTAGTGGTCCACTATGGCACCATTGCACCAATCCACCACCAAGGTGGCAGGTTGGCAGGTGGCAAGGTGGCAGTTTGCATCCTATCGCTACATCTTTCCTTTCCCCCTGGAACA]
consensusID : consensus_6865#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[TTTTTTTTTAGACATCTCCGGCGTAATACTTGGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCCAAATCAAACGAACTCCCATTTCCATTTTTGTGATTCTCAAAAGTGCAAATGTCAGTTCATTTAGTTGCAACTCAGTGTGGGTCAACAGGAGTATCCCACGGGTCAGCCCACACTCATCCCTAGCCAACTAGTGCAAGTGTCATGTCCTCACAGTTCCGTCACATCATTGGTCTCACCATCGGCGTCAGGCCCACAATTCCATGCAGTCACAGCAGCAGGCATGCACAACCATCTAGTCG]
[-] EMBL BI803319 [TTTTTTTTTAGACATCTCCGGCGTAATACTTGGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCCAAATCAAACGAACTCCCATTTCCATTTTTGTGATTCTCAAAAGTGCAAATGTCAGTTCATTTAGTTGCAACTCAGTGTGGGTCAACAGGAGTATCCCACGGGTCAGCCCACACTCATCCCTAGCCAACTAGTGCAAGTGTCATGTCCTCACAGTTCCGTCACATCATTGGTCTCACCATCGGCGTCAGGCCCACAATTCCATGCAGTCACAGCAGCAGGCATGCACAACCATCTAGTCG]
consensusID : consensus_6865#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence
[TTTTTTTTTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACTAATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCGCGTAATACTTTGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCAAATAAACGAACTACATTTCATTTTTTGGGATTCTAAAAGTGAAATTTAGTTCATTTAGTTGAACTAGTGGGGGTAAAGGAGTATCCACGGGTCAGCCCCCCCTTGTCTCGTCCTCT]
[+] EMBL CA761709 [TTTTTTTTTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACTAATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCGCGTAATACTTTGAAAGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCCAACCCATAGGTACTAATTGACCCACTCTAGTCCAAATAAACGAACTACATTTCATTTTTTGGGATTCTAAAAGTGAAATTTAGTTCATTTAGTTGAACTAGTGGGGGTAAAGGAGTATCCACGGGTCAGCCCCCCCTTGTCTCGTCCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6865#0 CTTTTTTTTTATATAATTTGCGCCGGAACATACCTAAATAAAAGTACAGCATTCAAGTAC 60
consensus_6865#3 ------------------------------------------------------------
consensus_6865#1 ------------------------------------------------------------
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 AAAATGTATGTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACT 120
consensus_6865#3 --TTTTTTTTTTGATCCTGAAAAATATGAGCAGCTCTCAAAAATCAAAAGCAGTAACACT 58
consensus_6865#1 ------------------------------------------------------------
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 AATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCG-TGTAATACTTTG-AA 178
consensus_6865#3 AATAAACCTCCCAGTCATTTAGCTCAAATTTTTAGACATCTCCG-CGTAATACTTTG-AA 116
consensus_6865#1 ------------------------------TCCAGACATCTCCG-CGTAATACTTTGGAA 29
consensus_6865#2 ------------------------TTTTTTTTTAGACATCTCCGGCGTAATACTT-GGAA 35
* *********** ********* * **
consensus_6865#0 AGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGTGGCCAAGACTGGCCACAGGCC 238
consensus_6865#3 AGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCC 176
consensus_6865#1 AGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGC-AAGACTGGCCACAGGCC 88
consensus_6865#2 AGAAGATGTGCTCAGTAGCGTACTATGATGCATGAATGCGGCCAAGACTGGCCACAGGCC 95
************************************** *** *****************
consensus_6865#0 AACCC--ATAGGT-ACT-AATTG--ACCCACTCT-AGTCCAAA--TAAACG-AACTA--C 286
consensus_6865#3 AACCC--ATAGGT-ACT-AATTG--ACCCACTCT-AGTCCAAA--TAAACG-AACTA--C 224
consensus_6865#1 AACCCCATCAGGTCACTCAATTGCACCCCACTCTCAGTCCCAAATCAAACGCAACTCACC 148
consensus_6865#2 AACCC--ATAGGT-ACT-AATTG--ACCCACTCT-AGTCCCAAATCAAACG-AACTC-CC 146
***** **** *** ***** ******** ***** ** ***** **** *
consensus_6865#0 ATTTC-ATTTTTTGTG--ATTCTAAAA--GTGAA---ATTT--AGTTC--ATTTAGTTG- 333
consensus_6865#3 ATTTC-ATTTTTTGGG--ATTCTAAAA--GTGAA---ATTT--AGTTC--ATTTAGTTG- 271
consensus_6865#1 ATTTCCATTATTTGTGCATTCCTCAAACAGTGCACACATTTGCAGTTCCATTTCAGTTGC 208
consensus_6865#2 ATTTCCATT-TTTGTG--ATTCTCAAA-AGTGCAAATGT---CAGTTC--ATTTAGTTGC 197
***** *** **** * * ** *** *** * * ***** ** *****
consensus_6865#0 AACT-AG-TGTGGGTAA---AGG-AGT--ATCCACGGG-TCAGCCCAC-ACTC-ATCCCT 382
consensus_6865#3 AACT-AG-TGGGGGTAA---AGG-AGT--ATCCACGGG-TCAGCCCCC-CCTT-GTCTC- 319
consensus_6865#1 AACTCAGATGTGGGTCACACAGGCAGTCATCCCACGGGGTCAGCCCACCACTCCATCCCT 268
consensus_6865#2 AACTCAG-TGTGGGTCA-ACAGG-AGT-ATCCCACGGG-TCAGCCCAC-ACTC-ATCCCT 250
**** ** ** **** * *** *** ******* ******* * ** ** *
consensus_6865#0 AG--CCAACT-AGTGAAGTGTATGTCTAAGTTCCTAATCTTTGTTTACATCGGCGTCAGG 439
consensus_6865#3 -G--TCCTCT-------------------------------------------------- 326
consensus_6865#1 CAGCCCAACTCAGTGCACAGGTTGTCATTGTCCTCACAGTTCC-TCA-ATC---TTTTGT 323
consensus_6865#2 AG--CCAACT-AGTGCA---AGTGTCAT-GTCCTCACAGTTCCGTCACATC---ATTGGT 300
* **
consensus_6865#0 CCCAATTCATGAGTAAGAGAGGTTGAAACATCTGTCGGATTGGCTTCAACCT-CAGTATA 498
consensus_6865#3 ------------------------------------------------------------
consensus_6865#1 TTCA--CCATCGGCTGTCCAGGCCCCAATATCCATTGCAGTCACAGCAGCAGGCATTGCA 381
consensus_6865#2 CTCA--CCATCGGC-GTCAGGCCCACAAT-TCCAT-GCAGTCACAGCAGCAGGCAT-GCA 354
consensus_6865#0 CAGTCAGCCTAAGAGGTAGCATGGTTAGAAGTCAACCTTCAAAATTA-TACAAGCATCTA 557
consensus_6865#3 ------------------------------------------------------------
consensus_6865#1 CCACCATCT-GTCGGGCATAGGCTTTCCAACCTCCCAGTCATCACCAGTCCAGCCCTCAA 440
consensus_6865#2 CAACCATCTAGTCG---------------------------------------------- 368
consensus_6865#0 TGTGCACCA-CCACTAATTTCAGAGCTGATAATTTTGGTCACTTGGACATGCACAATCAC 616
consensus_6865#3 ------------------------------------------------------------
consensus_6865#1 CGCAGGTCAGCCATTGGTTACAGCACAGTCCACACCTTTC-CACACACATTTCATACCAC 499
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 ACAGGTGGAGGTGGAGGTGGAGGTGGAGTTGATCCTTCGTTATCTTTCTTTC--CCGGTA 674
consensus_6865#3 ------------------------------------------------------------
consensus_6865#1 AGCCATCTCATAGTTAGCACCCAACCACTCACATTTCCAGCAGCTGCATCACATTTAGTG 559
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 AACACCTTGAGATGTAAGTTTTCAATTCAGTTTGGGGAACCGGTATGAACTTTCCAGAAA 734
consensus_6865#3 ------------------------------------------------------------
consensus_6865#1 GTCCACTATGGCACCATTGCACCAATCCACCACCAAGGTGGCAGGTTGGCAGGTGGCAAG 619
consensus_6865#2 ------------------------------------------------------------
consensus_6865#0 AAGCCAGGGGCCAACTCACAAATCCAATACCAACAGAAACAAGCCAAAG 783
consensus_6865#3 -------------------------------------------------
consensus_6865#1 GTGGCAGTTTGCATCCTATCGCTACATCTTTCCTTTCCCCCTGGAACA- 667
consensus_6865#2 -------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||