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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1356 fasta sequence
[TCCTTCTTCCTGCCTCTCTCTCTCAGTCGCCTCCTATGCTCGCCGGCGTCGCCCGCCGCCGGCGATGCCGAGCCCGCTGAAGCGCCGCATCCCAGGCCGCCTCGGCCGCCTCCTCGCCTCCCTCCGCCCGCCCTCCCGCGCGGGCCCTCTCCCCGTCCAGACCGGCTTCCCCACCTCCCTCGCCGACCTCCTCGTCAAGAACCATGACCGCCTCCTCCTCACCAAGCCCAGGCGCCGCCGCCGCCCGACCCCGCCGACGACGACGACCGCTACGGCCTCCGTTGCCGCCGCCGACGTCGAGACACCGCTGCCCAGTGGGCGGGAGGAGCTCGAGGAGGAGAAGGTTGGCGGCGTCGCTGTCAGGCTCCGCCCGGAGCTCCTCGGCGTCGGCGCGGCGGCGGCGCTCGCGCTGATGGTGATCTGGAGCAGGTGGTTGGTGGCGGCCGTCACCGTCGCCTCGCTGTCGCTGTTCTGGATCGAGTCCGTCAGGTCCTCCTCCTCCCGCCTCCGGCCACGGCCACGGTCAACTCCCGCGGCGGAGACCGCCGCTGAGCTGCCGGATTTGCGCGGCCGCGGCGTCGTCTCACCGATCCGGGAGGCGGCGGCAGCGACGCCCAGGCCGAGCTCCGCCGATTCCGACGTGGGGAGCGAGGTCTCCGTCTCCTCCATTTGGACCGACGGCGACGAGATGAGCCAGCTCGTCGTCGGCGATTCGACGACCAATCCCACCAAGAGGAAGGAGAAGAGGAGGTGGCTGAGGAAGCTAATCGCCAAGAGGAAGGAGAAGAAGGATTCCTCGGTGGTCTCCCCCTCCCACGGCGAGGTTGTCGGCAACGCCGCCGCCGAGCAGCAGCAGCAGCCGTCAACGTCGGCGGAGCCGATCATGGCGGAGGCGTCGCCGGCGGATGGTCGACGAGGAGGCGCATTGCCCGTCGCGGCGTTCGTCCCGGTCGTCCTCGTAGGCCTCGTCGGCGGGAAGCTCCCGGCGGTGGCGCTGACCGTGATCTTCGCCGTGTTCTTCAGCTCAGTGGAGAGGAGATCACCAGCTTAGCTCTAGTGATGATGAACTCATCTCACCATCAGTTCAGGTTTCTGAATTTCTTCAGAAATCAATCCGAAAGCTGCCCCTCGAAACCGAGGGAAACTTTCAGAAATTCAGATCGAGTTCGTTCGTTTGTTGTAAATTTAGAGAACCCAAAAAAACAAAAGACATAAATCAAAGTGTATAATACTAGTACATCTCTTCTGTTCTTCTGTTCTTGTTCATCCCAACTGTTCTTGTAAACTGCAAATCGCATTCCTTCTTTACTCTGAATTAAGAAGTGAAATGTTGGTGTTGTTATGCCAAAAAAAAAA]
[+] EMBL AK102484 [TCCTTCTTCCTGCCTCTCTCTCTCAGTCGCCTCCTATGCTCGCCGGCGTCGCCCGCCGCCGGCGATGCCGAGCCCGCTGAAGCGCCGCATCCCAGGCCGCCTCGGCCGCCTCCTCGCCTCCCTCCGCCCGCCCTCCCGCGCGGGCCCTCTCCCCGTCCAGACCGGCTTCCCCACCTCCCTCGCCGACCTCCTCGTCAAGAACCATGACCGCCTCCTCCTCACCAAGCCCAGGCGCCGCCGCCGCCCGACCCCGCCGACGACGACGACCGCTACGGCCTCCGTTGCCGCCGCCGACGTCGAGACACCGCTGCCCAGTGGGCGGGAGGAGCTCGAGGAGGAGAAGGTTGGCGGCGTCGCTGTCAGGCTCCGCCCGGAGCTCCTCGGCGTCGGCGCGGCGGCGGCGCTCGCGCTGATGGTGATCTGGAGCAGGTGGTTGGTGGCGGCCGTCACCGTCGCCTCGCTGTCGCTGTTCTGGATCGAGTCCGTCAGGTCCTCCTCCTCCCGCCTCCGGCCACGGCCACGGTCAACTCCCGCGGCGGAGACCGCCGCTGAGCTGCCGGATTTGCGCGGCCGCGGCGTCGTCTCACCGATCCGGGAGGCGGCGGCAGCGACGCCCAGGCCGAGCTCCGCCGATTCCGACGTGGGGAGCGAGGTCTCCGTCTCCTCCATTTGGACCGACGGCGACGAGATGAGCCAGCTCGTCGTCGGCGATTCGACGACCAATCCCACCAAGAGGAAGGAGAAGAGGAGGTGGCTGAGGAAGCTAATCGCCAAGAGGAAGGAGAAGAAGGATTCCTCGGTGGTCTCCCCCTCCCACGGCGAGGTTGTCGGCAACGCCGCCGCCGAGCAGCAGCAGCAGCCGTCAACGTCGGCGGAGCCGATCATGGCGGAGGCGTCGCCGGCGGATGGTCGACGAGGAGGCGCATTGCCCGTCGCGGCGTTCGTCCCGGTCGTCCTCGTAGGCCTCGTCGGCGGGAAGCTCCCGGCGGTGGCGCTGACCGTGATCTTCGCCGTGTTCTTCAGCTCAGTGGAGAGGAGATCACCAGCTTAGCTCTAGTGATGATGAACTCATCTCACCATCAGTTCAGGTTTCTGAATTTCTTCAGAAATCAATCCGAAAGCTGCCCCTCGAAACCGAGGGAAACTTTCAGAAATTCAGATCGAGTTCGTTCGTTTGTTGTAAATT ]
[+] EMBL AU031681 [ GCCCCTCGAAACCGAGGGAAACTTTCAGAAATTCAGATCGAGTTCGTTCGTTTGTTGTAAATTTAGAGAACCCAAAAAAACAAAAGACATAAATCAAAGTGTATAATACTAGTACATCTCTTCTGTTCTTCTGTTCTTGTTCATCCCAACTGTTCTTGTAAACTGCAAATCGCATTCCTTCTTTACTCTGAATTAAGAAGTGAAATGTTGGTGTTGTTATGCCAAAAAAAAAA]
[+] EMBL OSR04961A [ GCCCCTCGAAACCGAGGGAAACTTTCAGAAATTCAGATCGAGTTCGTTCGTTTGTTGTAAATTTAGAGAACCCAAAAAAACAAAAGACATAAATCAAAGTGTATAATACTAGTACATCTCTTCTGTTCTTCTGTTCTTGTTCATCCCAACTGTTCTTGTAAACTGCAAATCGCATTCCTTCTTTACTCTGAATTAAGAAGTGAAATGTTGGTGTTGTT ]
consensusID : consensus_6868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence
[GNGGTCTACCCNCCCACGGCGAGGTTGTCGGCAACGNNNCGCCGAGCAGCAGCAGCAGCNGTCAACGTCGGCGGANATACAATGTCGGAGGCGTNANCGGCGGATGGTCGACGAGGAGGCGCATTGCCCGTCGCGGCGTTCGTCCCGGTCGTCCTCGTAGGCCTCNTCGGCGGGAAGCTCCCGGCGGTGGCGCTGACCGTAATCTTCGCCGTGTTCTTCAGCTCAGTGGAGAGGAGATCANCAGCTTAAGCTCTAGTGATGATGAACTCATCTCACCATCAGTTCAGGTTTCTGAATTTTTTTCAAGAAATCAATCCGAAAG]
[+] EMBL OS1321949 [GNGGTCTACCCNCCCACGGCGAGGTTGTCGGCAACGNNNCGCCGAGCAGCAGCAGCAGCNGTCAACGTCGGCGGANATACAATGTCGGAGGCGTNANCGGCGGATGGTCGACGAGGAGGCGCATTGCCCGTCGCGGCGTTCGTCCCGGTCGTCCTCGTAGGCCTCNTCGGCGGGAAGCTCCCGGCGGTGGCGCTGACCGTAATCTTCGCCGTGTTCTTCAGCTCAGTGGAGAGGAGATCANCAGCTTAAGCTCTAGTGATGATGAACTCATCTCACCATCAGTTCAGGTTTCTGAATTTTTTTCAAGAAATCAATCCGAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6868#0 TCCTTCTTCCTGCCTCTCTCTCTCAGTCGCCTCCTATGCTCGCCGGCGTCGCCCGCCGCC 60
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 GGCGATGCCGAGCCCGCTGAAGCGCCGCATCCCAGGCCGCCTCGGCCGCCTCCTCGCCTC 120
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 CCTCCGCCCGCCCTCCCGCGCGGGCCCTCTCCCCGTCCAGACCGGCTTCCCCACCTCCCT 180
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 CGCCGACCTCCTCGTCAAGAACCATGACCGCCTCCTCCTCACCAAGCCCAGGCGCCGCCG 240
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 CCGCCCGACCCCGCCGACGACGACGACCGCTACGGCCTCCGTTGCCGCCGCCGACGTCGA 300
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 GACACCGCTGCCCAGTGGGCGGGAGGAGCTCGAGGAGGAGAAGGTTGGCGGCGTCGCTGT 360
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 CAGGCTCCGCCCGGAGCTCCTCGGCGTCGGCGCGGCGGCGGCGCTCGCGCTGATGGTGAT 420
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 CTGGAGCAGGTGGTTGGTGGCGGCCGTCACCGTCGCCTCGCTGTCGCTGTTCTGGATCGA 480
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 GTCCGTCAGGTCCTCCTCCTCCCGCCTCCGGCCACGGCCACGGTCAACTCCCGCGGCGGA 540
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 GACCGCCGCTGAGCTGCCGGATTTGCGCGGCCGCGGCGTCGTCTCACCGATCCGGGAGGC 600
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 GGCGGCAGCGACGCCCAGGCCGAGCTCCGCCGATTCCGACGTGGGGAGCGAGGTCTCCGT 660
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 CTCCTCCATTTGGACCGACGGCGACGAGATGAGCCAGCTCGTCGTCGGCGATTCGACGAC 720
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 CAATCCCACCAAGAGGAAGGAGAAGAGGAGGTGGCTGAGGAAGCTAATCGCCAAGAGGAA 780
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 GGAGAAGAAGGATTCCTCGGTGGTCTCCCCCTCCCACGGCGAGGTTGTCGGCAACGCCGC 840
consensus_6868#1 -------------------GNGGTCTACCCN-CCCACGGCGAGGTTGTCGGCAACGNNNC 40
* ***** *** ************************ *
consensus_6868#0 CGCCGAGCAGCAGCAGCAGCCGTCAACGTCGGCGGAGCCGATCATGGCGGAGGCGTCGCC 900
consensus_6868#1 -GCCGAGCAGCAGCAGCAGCNGTCAACGTCGGCGGANAT-ACAATGTCGGAGGCGTNANC 98
******************* *************** * *** ********* *
consensus_6868#0 GGCGGATGGTCGACGAGGAGGCGCATTGCCCGTCGCGGCGTTCGTCCCGGTCGTCCTCGT 960
consensus_6868#1 GGCGGATGGTCGACGAGGAGGCGCATTGCCCGTCGCGGCGTTCGTCCCGGTCGTCCTCGT 158
************************************************************
consensus_6868#0 AGGCCTCGTCGGCGGGAAGCTCCCGGCGGTGGCGCTGACCGTGATCTTCGCCGTGTTCTT 1020
consensus_6868#1 AGGCCTCNTCGGCGGGAAGCTCCCGGCGGTGGCGCTGACCGTAATCTTCGCCGTGTTCTT 218
******* ********************************** *****************
consensus_6868#0 CAGCTCAGTGGAGAGGAGATCACCAGCTTA-GCTCTAGTGATGATGAACTCATCTCACCA 1079
consensus_6868#1 CAGCTCAGTGGAGAGGAGATCANCAGCTTAAGCTCTAGTGATGATGAACTCATCTCACCA 278
********************** ******* *****************************
consensus_6868#0 TCAGTTCAGGTTTCTGAATTTCTTC--AGAAATCAATCCGAAAGCTGCCCCTCGAAACCG 1137
consensus_6868#1 TCAGTTCAGGTTTCTGAATTTTTTTCAAGAAATCAATCCGAAAG---------------- 322
********************* ** *****************
consensus_6868#0 AGGGAAACTTTCAGAAATTCAGATCGAGTTCGTTCGTTTGTTGTAAATTTAGAGAACCCA 1197
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 AAAAAACAAAAGACATAAATCAAAGTGTATAATACTAGTACATCTCTTCTGTTCTTCTGT 1257
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 TCTTGTTCATCCCAACTGTTCTTGTAAACTGCAAATCGCATTCCTTCTTTACTCTGAATT 1317
consensus_6868#1 ------------------------------------------------------------
consensus_6868#0 AAGAAGTGAAATGTTGGTGTTGTTATGCCAAAAAAAAAA 1356
consensus_6868#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||