cluster # 6873

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6873 cluster # 6873 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6873#0 length = 833 sequences # 1
consensus_6873#1 length = 509 sequences # 1

consensus_6873#2 length = 492 sequences # 1
consensus_6873#3 length = 415 sequences # 1

consensusID : consensus_6873#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 833
fasta sequence

                              [AAAAAAATCCTAAAAGCTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGGTGAATAAAGCTACTATACCTTTCAATTTCCTCCTATATGGTCTCTTTGATGCGTAGGACTATTCTTGATTCTCTTACACTGAAAATAATGCTGTTTTTTCAAAAGAAACCTGTTGGTTTCTTGTTTTCAATGAAAACGAGGATTAATGGGCGGGCTCATGCCTTTTGGTACTTTTTTTTTCTTTTGGTTAAAAAAGGACAAACCCTTGGAAAAATGGCATACCTAGAAAAGGATTAGAATTTAGGACTTGTTGCAACTTGCAAGTGGCAATTGTTTTTTTTTTTCAGTTTTTTTAGTTTCATCGTGCTGAGAAGTGAGAAGAACTAGTTGATAATTCTGCGGGAACAGAGGAACCTGTAGGCTGTACACAGCGGTTTTGGTATTCGGCAAGTTGAACTCTTCCTGGGAATGCCAACCTATTTTCTCTTATTTATCCTTTAGATATATGTATCCTACCTTGTTCTCGCTGTACTTCTTTTATTTATAGTGTCAAA]

[+] EMBL CB627498             [AAAAAAATCCTAAAAGCTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGGTGAATAAAGCTACTATACCTTTCAATTTCCTCCTATATGGTCTCTTTGATGCGTAGGACTATTCTTGATTCTCTTACACTGAAAATAATGCTGTTTTTTCAAAAGAAACCTGTTGGTTTCTTGTTTTCAATGAAAACGAGGATTAATGGGCGGGCTCATGCCTTTTGGTACTTTTTTTTTCTTTTGGTTAAAAAAGGACAAACCCTTGGAAAAATGGCATACCTAGAAAAGGATTAGAATTTAGGACTTGTTGCAACTTGCAAGTGGCAATTGTTTTTTTTTTTCAGTTTTTTTAGTTTCATCGTGCTGAGAAGTGAGAAGAACTAGTTGATAATTCTGCGGGAACAGAGGAACCTGTAGGCTGTACACAGCGGTTTTGGTATTCGGCAAGTTGAACTCTTCCTGGGAATGCCAACCTATTTTCTCTTATTTATCCTTTAGATATATGTATCCTACCTTGTTCTCGCTGTACTTCTTTTATTTATAGTGTCAAA]




>consensus_6873#0
AAAAAAATCCTAAAAGCTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGC
CTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTAT
CCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTT
TGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCT
GAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGA
CGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGGTGAATAAAGCTACTATACCTT
TCAATTTCCTCCTATATGGTCTCTTTGATGCGTAGGACTATTCTTGATTCTCTTACACTG
AAAATAATGCTGTTTTTTCAAAAGAAACCTGTTGGTTTCTTGTTTTCAATGAAAACGAGG
ATTAATGGGCGGGCTCATGCCTTTTGGTACTTTTTTTTTCTTTTGGTTAAAAAAGGACAA
ACCCTTGGAAAAATGGCATACCTAGAAAAGGATTAGAATTTAGGACTTGTTGCAACTTGC
AAGTGGCAATTGTTTTTTTTTTTCAGTTTTTTTAGTTTCATCGTGCTGAGAAGTGAGAAG
AACTAGTTGATAATTCTGCGGGAACAGAGGAACCTGTAGGCTGTACACAGCGGTTTTGGT
ATTCGGCAAGTTGAACTCTTCCTGGGAATGCCAACCTATTTTCTCTTATTTATCCTTTAG
ATATATGTATCCTACCTTGTTCTCGCTGTACTTCTTTTATTTATAGTGTCAAA

consensusID : consensus_6873#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence

                              [CATGTGCATTCCTTCTCTGAACCGTGCCCCCCCAATTCGTCCGCGAGCTATACAAATTTGGATTCGTTTTGTTCGTTTCCAGCTCACCCTGTAAATCGTTTCTCAAGTCATTCAGGCATACTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTATTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA]

[+] EMBL CB651784             [CATGTGCATTCCTTCTCTGAACCGTGCCCCCCCAATTCGTCCGCGAGCTATACAAATTTGGATTCGTTTTGTTCGTTTCCAGCTCACCCTGTAAATCGTTTCTCAAGTCATTCAGGCATACTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTATTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA]




>consensus_6873#1
CATGTGCATTCCTTCTCTGAACCGTGCCCCCCCAATTCGTCCGCGAGCTATACAAATTTG
GATTCGTTTTGTTCGTTTCCAGCTCACCCTGTAAATCGTTTCTCAAGTCATTCAGGCATA
CTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCC
ATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAA
TTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAG
CTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTC
CAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGT
GATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTATTGGCTGCTTCAAT
GAAAAGGCCAAGAAGCTTCTCGAGTTGCA

consensusID : consensus_6873#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [CCTAACCGTTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCTCATTCAGGCATACTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTGTTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA]

[+] EMBL CB617769             [CCTAACCGTTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCTCATTCAGGCATACTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTGTTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA]




>consensus_6873#2
CCTAACCGTTTAATTTCTTTCTTTGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTC
AACTGAATTTCTGGCCCCCTCTTCATCTCCTCATTCAGGCATACTCACATCGCACAAACA
TATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCCATAGGCGTACAAGTTAT
CCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTT
TGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCT
GAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGA
CGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCC
ATCTCTTCTCAATGAGATGTCAGCCGTTGTTGGCTGCTTCAATGAAAAGGCCAAGAAGCT
TCTCGAGTTGCA

consensusID : consensus_6873#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [TTAATCCCTTTCAATGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTATTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA]

[+] EMBL CB649030             [TTAATCCCTTTCAATGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATTTCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGATGTCAGCCGTTATTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA]




>consensus_6873#3
TTAATCCCTTTCAATGTTCTTATTACTGTCTCACGTGAGACGCCTGAGCTCAACTGAATT
TCTGGCCCCCTCTTCATCTCCACGCCATAGGCGTACAAGTTATCCATTCAAGCGCTCCAA
AAATTTGCCAAGAAGTTTGCCTTAAATTTGGATTCATGAAGTTTGCCAAGAAGTACGAGA
AGTACATGAAGGGGATGGATGAGGAGCTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAAT
TGCTCAAGAAATGCCGCTCTGACCTCCAATCCCACGAGAACGACGGCTCCTCCGCCGGCC
GCTGCCCCGGCCATTGCTCTGTATGTGATGGGAGTTTTTTCCCATCTCTTCTCAATGAGA
TGTCAGCCGTTATTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6873#1      CATGTGCATTCCTTCTCTGAACCGTGCCCCCCCAATTCGTCCGCGAGCTATACAAATTTG 60
consensus_6873#2      CCTAACCGTTTAATTTCTTT-CTTTGTTCTTATTACTGTCTCACGTG----AGACGCCTG 55
consensus_6873#3      ------------------------------------------------------------
consensus_6873#0      -----------------------------------------------------------A 1
                                                                                  

consensus_6873#1      GATTCGTTTTGTTCGTTTCCAGCTCACCCTGTAAATCGTTTCTCAAGTCATTCAGGCATA 120
consensus_6873#2      AGCTCAACTGA---ATTTCTGGCCCCCTCT-----TCATCTCC----TCATTCAGGCATA 103
consensus_6873#3      -------------------------------TTAATCCCTTTCAATGTTCTTATTACTGT 29
consensus_6873#0      AAAAAATCCTAAAAGCTTA-ATTTCTTTCT-----TTGTTCTT---ATTACT--GTCTCA 50
                                                         *           *   *    *   

consensus_6873#1      CTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCC 180
consensus_6873#2      CTCACATCGCACAAACATATATATACCCCAAGATTTTGAATCCATCAATTTGCAGACGCC 163
consensus_6873#3      CTCACGTGAGACGCCTGAGCTCA---ACTGAATTTCTGGCCCCCTCTTCATCTCCACGCC 86
consensus_6873#0      CGTGAGACGCCTGAGCTCA-------ACTGAATTTCTGGCCCCCTCTTCATCTCCACGCC 103
                      *                          *  *  ** **   ** **    *    *****

consensus_6873#1      ATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAA 240
consensus_6873#2      ATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAA 223
consensus_6873#3      ATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAA 146
consensus_6873#0      ATAGGCGTACAAGTTATCCATTCAAGCGCTCCAAAAATTTGCCAAGAAGTTTGCCTTAAA 163
                      ************************************************************

consensus_6873#1      TTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAG 300
consensus_6873#2      TTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAG 283
consensus_6873#3      TTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAG 206
consensus_6873#0      TTTGGATTCATGAAGTTTGCCAAGAAGTACGAGAAGTACATGAAGGGGATGGATGAGGAG 223
                      ************************************************************

consensus_6873#1      CTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTC 360
consensus_6873#2      CTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTC 343
consensus_6873#3      CTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTC 266
consensus_6873#0      CTCCCGGGCGTGGGGCTGAAGCGGCTCAAGAAATTGCTCAAGAAATGCCGCTCTGACCTC 283
                      ************************************************************

consensus_6873#1      CAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTG-TATG 419
consensus_6873#2      CAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTG-TATG 402
consensus_6873#3      CAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTG-TATG 325
consensus_6873#0      CAATCCCACGAGAACGACGGCTCCTCCGCCGGCCGCTGCCCCGGCCATTGCTCTGGTGAA 343
                      ******************************************************* *   

consensus_6873#1      TGATGGGA------------GTTTTTTCCCATCTCTTCTCAATGAGATGTCAG-CCGTTA 466
consensus_6873#2      TGATGGGA------------GTTTTTTCCCATCTCTTCTCAATGAGATGTCAG-CCGTTG 449
consensus_6873#3      TGATGGGA------------GTTTTTTCCCATCTCTTCTCAATGAGATGTCAG-CCGTTA 372
consensus_6873#0      TAAAGCTACTATACCTTTCAATTTCCTCCTATATGGTCTCTTTGATGCGTAGGACTATTC 403
                      * * *  *             ***  *** ** *  ****  ***   **  * *  ** 

consensus_6873#1      TTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA----------------- 509
consensus_6873#2      TTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA----------------- 492
consensus_6873#3      TTGGCTGCTTCAATGAAAAGGCCAAGAAGCTTCTCGAGTTGCA----------------- 415
consensus_6873#0      TTGATTCTCTTACACTGAAAATAATGCTGTTTTTTCAAAAGAAACCTGTTGGTTTCTTGT 463
                      ***  *   * *     **    * *  * ** *  *   * *                 

consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
consensus_6873#3      ------------------------------------------------------------
consensus_6873#0      TTTCAATGAAAACGAGGATTAATGGGCGGGCTCATGCCTTTTGGTACTTTTTTTTTCTTT 523
                                                                                  

consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
consensus_6873#3      ------------------------------------------------------------
consensus_6873#0      TGGTTAAAAAAGGACAAACCCTTGGAAAAATGGCATACCTAGAAAAGGATTAGAATTTAG 583
                                                                                  

consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
consensus_6873#3      ------------------------------------------------------------
consensus_6873#0      GACTTGTTGCAACTTGCAAGTGGCAATTGTTTTTTTTTTTCAGTTTTTTTAGTTTCATCG 643
                                                                                  

consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
consensus_6873#3      ------------------------------------------------------------
consensus_6873#0      TGCTGAGAAGTGAGAAGAACTAGTTGATAATTCTGCGGGAACAGAGGAACCTGTAGGCTG 703
                                                                                  

consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
consensus_6873#3      ------------------------------------------------------------
consensus_6873#0      TACACAGCGGTTTTGGTATTCGGCAAGTTGAACTCTTCCTGGGAATGCCAACCTATTTTC 763
                                                                                  

consensus_6873#1      ------------------------------------------------------------
consensus_6873#2      ------------------------------------------------------------
consensus_6873#3      ------------------------------------------------------------
consensus_6873#0      TCTTATTTATCCTTTAGATATATGTATCCTACCTTGTTCTCGCTGTACTTCTTTTATTTA 823
                                                                                  

consensus_6873#1      ----------
consensus_6873#2      ----------
consensus_6873#3      ----------
consensus_6873#0      TAGTGTCAAA 833