These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1006 fasta sequence [GAGAGAGGAGGAGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGCAGCTAGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAAGGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCACATCAGCTGTTGTAAATGATTATTACTTCTATAAAATTCTAATTCATTGCTGCCAAAACCCAAATCGGCCTATAGGGAAGAATAATACCCGCGGCTAATTGGCCCCCGTTTACAATCGCCGGACCGGGAAAACCCTCGATATTACACTACTCTTGTGGGGGGGCCCGGGACCCAAATTTCCCTATTGGGGGGTTTATTCACCGCGCCCCTTTGCGCCTGGTTTTACCAACGGGGGGCGGGAGAAACCTCGGGGTGATGGCCAATCTAATTTGTCTTGGGGCCATATCCCCCTTTTGGCCGTTGGGGGTAAAACAAAAAGGGCCCCGCAACCTTTCCCCTTCCCAACAATTCGGCACCTTAAAGTGAAAGTGGTGCCCCCCTCTAAAGAGGCCCTATAATCCCGCGGGGGGGTGGTGTGTACGCCCTCTTTGTCTTCGGTTAATTTTTTAAGGGGCCTTTTGGCCCCCTNTTTTCCACAATTATTTTTAATTTTCTTTCTCGGCGCCACACAGACGAGCCTTCCCCCGCAAGATAAAAAAAATATGCGCGCCTCTCTAGTGGGTTCCTCCCTGGCTTT] [+] EMBL BE040107 [GAGAGAGGAGGAGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGCAGCTAGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAAGGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCACATCAGCTGTTGTAAATGATTATTACTTCTATAAAATTCTAATTCATTGCTGCCAAAACCCAAATCGGCCTATAGGGAAGAATAATACCCGCGGCTAATTGGCCCCCGTTTACAATCGCCGGACCGGGAAAACCCTCGATATTACACTACTCTTGTGGGGGGGCCCGGGACCCAAATTTCCCTATTGGGGGGTTTATTCACCGCGCCCCTTTGCGCCTGGTTTTACCAACGGGGGGCGGGAGAAACCTCGGGGTGATGGCCAATCTAATTTGTCTTGGGGCCATATCCCCCTTTTGGCCGTTGGGGGTAAAACAAAAAGGGCCCCGCAACCTTTCCCCTTCCCAACAATTCGGCACCTTAAAGTGAAAGTGGTGCCCCCCTCTAAAGAGGCCCTATAATCCCGCGGGGGGGTGGTGTGTACGCCCTCTTTGTCTTCGGTTAATTTTTTAAGGGGCCTTTTGGCCCCCTNTTTTCCACAATTATTTTTAATTTTCTTTCTCGGCGCCACACAGACGAGCCTTCCCCCGCAAGATAAAAAAAATATGCGCGCCTCTCTAGTGGGTTCCTCCCTGGCTTT] consensusID : consensus_6877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence [GCCCTGACGCCCCCCTCGCCGNCCGCGGTGGCGGTGCGGAGCGACGGGACGGTGGCGGTGGGCGGCGGCGCCACGCTGCGCCTCGTCGGCAGCAACGACGGGTGGTCGTCGTGCGCCGAGCGCGACGAGGCCGAGCCGGACGGCGGCGCCGCCGCCGCCGTGGCGGCCGTGGCGGTGAGGGAGCGGAGGCGGGTGTACGCGCTGGTGGCGGCGGCGGACGCGGAGAAGGCGGCGGCGTGGCGGATCGAGGAGGTGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAA-GGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCACATCAGCTGTTGTAAATGATTATTAATGCTATAAAATTCTAATTCATTACTACCTAGGATAAAAAAGGA] [-] EMBL CB661070 [GCCCTGACGCCCCCCTCGCCGNCCGCGGTGGCGGTGCGGAGCGACGGGACGGTGGCGGTGGGCGGCGGCGCCACGCTGCGCCTCGTCGGCAGCAACGACGGGTGGTCGTCGTGCGCCGAGCGCGACGAGGCCGAGCCGGACGGCGGCGCCGCCGCCGCCGTGGCGGCCGTGGCGGTGAGGGAGCGGAGGCGGGTGTACGCGCTGGTGGCGGCGGCGGACGCGGAGAAGGCGGCGGCGTGGCGGATCGAGGAGGTGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAAGGGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCACATCAGCTGTTGTAAATGATTATTAATGCTATAAAATTCTAATTCATTACTACCTAGGATAAAAAAGGA] [+] EMBL AU174580 [ TGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAA GGCTGTTACGGTTATC ] [+] EMBL AU174579 [ GAGATGGTTGTGGGCTTCGTCTTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCCGGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTGTTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGCGACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTATCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGTACACGATGTAGTAGAATTTGATCAAAA GGCTGTTACGGTTATCTTGGTTCATGAATGCAAAGTGCAGTTCGCATCAGCTGTTGTAAATGATTATTACTTCTATAAAATTCTAATTCATTACTACCTAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6877#0 ------------------------------------------------------------ consensus_6877#1 GCCCTGACGCCCCCCTCGCCGNCCGCGGTGGCGGTGCGGAGCGACGGGACGGTGGCGGTG 60 consensus_6877#0 ------------------------------------------------------------ consensus_6877#1 GGCGGCGGCGCCACGCTGCGCCTCGTCGGCAGCAACGACGGGTGGTCGTCGTGCGCCGAG 120 consensus_6877#0 ------------------------------------------------------------ consensus_6877#1 CGCGACGAGGCCGAGCCGGACGGCGGCGCCGCCGCCGCCGTGGCGGCCGTGGCGGTGAGG 180 consensus_6877#0 ------------------------------------------------------------ consensus_6877#1 GAGCGGAGGCGGGTGTACGCGCTGGTGGCGGCGGCGGACGCGGAGAAGGCGGCGGCGTGG 240 consensus_6877#0 --GAGAGAGGAGGAGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTC 58 consensus_6877#1 CGGATCGAGGAGGTGTCGTGGAAGAAGGAAGGCGAAGGGGAGATGGTTGTGGGCTTCGTC 300 ** ******* ********************************************** consensus_6877#0 TTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGCAGCTAGCC 118 consensus_6877#1 TTCGTCGGCGTCGCGCTCGCCATCTTCATGTTCTGGAGGTTCCAAATGCGGGAGCTCGCC 360 *************************************************** **** *** consensus_6877#0 GGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTG 178 consensus_6877#1 GGCAGCATGAACAAGAAGATCAGATAGTAACAGCATTGCAATGCTCTGAACTCCAAATTG 420 ************************************************************ consensus_6877#0 TTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGC 238 consensus_6877#1 TTCTAGGATATTTTTGATTTCTGGTTGAATTTAGGAGGATTTTACTTGGTTTTGTTGCGC 480 ************************************************************ consensus_6877#0 GACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTA 298 consensus_6877#1 GACAGTTGGTACAGACACTTGTAGAATAGAAATTTTACTCATCATCGAACCATGAATCTA 540 ************************************************************ consensus_6877#0 TCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGT 358 consensus_6877#1 TCTACGACGACAGAAGAGGATAGTAGAAATGATCCTGGTTTTCAGTTGTTTATTGGAAGT 600 ************************************************************ consensus_6877#0 ACACGATGTAGTAGAATTTGATCAAAAGGCTGTTACGGTTATCTTGGTTCATGAATGCAA 418 consensus_6877#1 ACACGATGTAGTAGAATTTGATCAAAAGGCTGTTACGGTTATCTTGGTTCATGAATGCAA 660 ************************************************************ consensus_6877#0 AGTGCAGTTCACATCAGCTGTTGTAAATGATTATTACTTCTATAAAATTCTAATTCATTG 478 consensus_6877#1 AGTGCAGTTCACATCAGCTGTTGTAAATGATTATTAATGCTATAAAATTCTAATTCATTA 720 ************************************ * ******************** consensus_6877#0 CTGCCAAAACCCAAATCGGCCTATAGGGAAGAATAATACCCGCGGCTAATTGGCCCCCGT 538 consensus_6877#1 CTACCTAGGATAAAAAAGGA---------------------------------------- 740 ** ** * *** ** consensus_6877#0 TTACAATCGCCGGACCGGGAAAACCCTCGATATTACACTACTCTTGTGGGGGGGCCCGGG 598 consensus_6877#1 ------------------------------------------------------------ consensus_6877#0 ACCCAAATTTCCCTATTGGGGGGTTTATTCACCGCGCCCCTTTGCGCCTGGTTTTACCAA 658 consensus_6877#1 ------------------------------------------------------------ consensus_6877#0 CGGGGGGCGGGAGAAACCTCGGGGTGATGGCCAATCTAATTTGTCTTGGGGCCATATCCC 718 consensus_6877#1 ------------------------------------------------------------ consensus_6877#0 CCTTTTGGCCGTTGGGGGTAAAACAAAAAGGGCCCCGCAACCTTTCCCCTTCCCAACAAT 778 consensus_6877#1 ------------------------------------------------------------ consensus_6877#0 TCGGCACCTTAAAGTGAAAGTGGTGCCCCCCTCTAAAGAGGCCCTATAATCCCGCGGGGG 838 consensus_6877#1 ------------------------------------------------------------ consensus_6877#0 GGTGGTGTGTACGCCCTCTTTGTCTTCGGTTAATTTTTTAAGGGGCCTTTTGGCCCCCTN 898 consensus_6877#1 ------------------------------------------------------------ consensus_6877#0 TTTTCCACAATTATTTTTAATTTTCTTTCTCGGCGCCACACAGACGAGCCTTCCCCCGCA 958 consensus_6877#1 ------------------------------------------------------------ consensus_6877#0 AGATAAAAAAAATATGCGCGCCTCTCTAGTGGGTTCCTCCCTGGCTTT 1006 consensus_6877#1 ------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||