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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6878#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1227 fasta sequence
[GCCGCGGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGTATGATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATACTGTGGCGGCGAATCCTGTGGCCAGAATTTGAGGTTTTGTGGTTTAATTCAGTTCTGAACCGGAGTTCAGAGTGGGGTACACATTCCATCCATTGGTACTTCACCTCAGCACTTCCACGCTCCATGCTGGTAGCATATCCTCTTTGCATGGTCGGTGCTCTTCTTGACAGAAGGATAGTGCCATACATACTTCCAGTCTTCTCATTTGTTGTGCTTTATTCAAAGCTTCCACATAAGGAGCTTCGCTTCATTATGGCTTCGATTCCCATGCTTAATGTGTCTGCTTCACTAGCAGCAAGCAGAATATATAATAACAGAAAGAAAACTGGGTGGAAGTTACTTTATGTTCTCATGATTGGTGGCTTTCTTTCCAGTCTAGGATACTCTGGTGTAACTTTCATGGCATCCTACAATAATTATCCTGGTGGATATGCTCTAAAGGCTCTACA]
[+] EMBL CB622594 [GCCGCGGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGTATGATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATA ]
[+] EMBL CB617966 [GCCCCTGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGTATGATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGGAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCCAATGTTGTGTAAGCACTGCCATTAT ]
[+] EMBL AK069661 [ CGGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGTATGATCATTTAGAATTTCCTGGTGTTGTCCCTCGGTCATTTATAGGAGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCAAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATACTGTGGCGGCGAATCCTGTGGCCAGAATTTGAGGTTTTGTGGTTTAATTCAGTTCTGAACCGGAGTTCAGAGTGGGGTACACATTCCATCCATTGGTACTTCACCTCAGCACTTCCACGCTCCATGCTGGTAGCATATCCTCTTTGCATGGTCGGTGCTCTTCTTGACAGAAGGATAGTGCCATACATACTTCCAGTCTTCTCATTTGTTGTGCTTTATTCAAAGCTTCCACATAAGGAGCTTCGCTTCATTATGGCTTCGATTCCCATGCTTAATGTGTCTGCTTCACTAGCAGCAAGCAGAATATATAATAACAGAAAGAAAACTGGGTGGAAGTTACTTTATGTTCTCATGATTGGTGGCTTTCTTTCCAGTCTAGGATACTCTGGTGTAACTTTCATGGCATCCTACAATAATTATCCTGGTGGATATGCTCTAAAGGCTCTACA]
consensusID : consensus_6878#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 825 fasta sequence
[CTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGGTAATACTATGTTCACTTGAAGCCTTGATCTGTGCACTATGCTACAATTTTTCCGCTAATGACCATTGCTTGGCTCAAGCATAATGAAATGGCAAGTAGATGGTCAAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATACTGTGG]
[+] EMBL CB628379 [CTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTTGCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTACGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACACCAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCATATTGAGAAGGTAATACTATGTTCACTTGAAGCCTTGATCTGTGCACTATGCTACAATTTTTCCGCTAATGACCATTGCTTGGCTCAAGCATAATGAAATGGCAAGTAGATGGTCAAGGCGCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTTCCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACTTTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTATCTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAATGTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGACGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTTCTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATCAAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATACTGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6878#0 GCCGCGGAATTCCGGAAGCGACTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTT 60
consensus_6878#1 ---------------------CTCGCTCTCGTCGGCTCGTCGCACGCGCGAGCCCACTTT 39
***************************************
consensus_6878#0 GCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTA 120
consensus_6878#1 GCCGGCCACCGGGATGGCGCCGCCGCGGCCCTCGCCGGCGGCGAGGCTGCTGAGGGAGTA 99
************************************************************
consensus_6878#0 CGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACAC 180
consensus_6878#1 CGGGTGGGACCTGTTGCTCGGATCGATTGCCGCGTTCTACGCCGTCATGGTGCCCTACAC 159
************************************************************
consensus_6878#0 CAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCA 240
consensus_6878#1 CAAGGTGGAAGAGAGCTTCAACGTGCAGGCCATGCATGACATTCTCTACCACAACTATCA 219
************************************************************
consensus_6878#0 TATTGAGAAG-------TATGATCATTTAGAA--------------------------TT 267
consensus_6878#1 TATTGAGAAGGTAATACTATGTTCACTTGAAGCCTTGATCTGTGCACTATGCTACAATTT 279
********** **** *** ** * **
consensus_6878#0 TCCTGGTGTTGTCC----CTCGG-TCATTTATA------------------------GGC 298
consensus_6878#1 TTCCGCTAATGACCATTGCTTGGCTCAAGCATAATGAAATGGCAAGTAGATGGTCAAGGC 339
* * * * ** ** ** ** *** *** ***
consensus_6878#0 GCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTT 358
consensus_6878#1 GCATTGGTTGTATCTGTTATCTCATCGCCTGCAGTCTTCGTAATGCATTTATGTCATGTT 399
************************************************************
consensus_6878#0 CCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACT 418
consensus_6878#1 CCAAAGGTTTATGGTCTTCTAGCAGTTCGGATAGTGTTGGGTAGTATTATCCTGATGACT 459
************************************************************
consensus_6878#0 TTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTAT 478
consensus_6878#1 TTGAGACTTCTCCGAGTTCAGGTAAAAAGGAAGTTTGGTCATCATGCTGAAGCATTCTAT 519
************************************************************
consensus_6878#0 CTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAAT 538
consensus_6878#1 CTGATACTAACTGCTACCCAGTTTCACTTATTGTTCTACTCAACCAGGCCCCTTCCGAAT 579
************************************************************
consensus_6878#0 GTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGA 598
consensus_6878#1 GTCTTAGCTTTAGCTTTTGTTAACTTGACATACTATTTCTGGTTCAAGGGAAACCATCGA 639
************************************************************
consensus_6878#0 CGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTT 658
consensus_6878#1 CGCACATTACAGGCCCTGATTGTCGCAGCAGTTATTTTTAGGTGTGACATGATTTTGCTT 699
************************************************************
consensus_6878#0 CTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATC 718
consensus_6878#1 CTTGGTACAATAGGACTTGCACTTTTGCTGAGCAGGTCTATTTCTCTATTGGAAGCAATC 759
************************************************************
consensus_6878#0 AAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATA 778
consensus_6878#1 AAATGTTGTGTAAGCACTGCCATTATATGCATTGGCTTCACTGTACTGGTTGACTCTATA 819
************************************************************
consensus_6878#0 CTGTGGCGGCGAATCCTGTGGCCAGAATTTGAGGTTTTGTGGTTTAATTCAGTTCTGAAC 838
consensus_6878#1 CTGTGG------------------------------------------------------ 825
******
consensus_6878#0 CGGAGTTCAGAGTGGGGTACACATTCCATCCATTGGTACTTCACCTCAGCACTTCCACGC 898
consensus_6878#1 ------------------------------------------------------------
consensus_6878#0 TCCATGCTGGTAGCATATCCTCTTTGCATGGTCGGTGCTCTTCTTGACAGAAGGATAGTG 958
consensus_6878#1 ------------------------------------------------------------
consensus_6878#0 CCATACATACTTCCAGTCTTCTCATTTGTTGTGCTTTATTCAAAGCTTCCACATAAGGAG 1018
consensus_6878#1 ------------------------------------------------------------
consensus_6878#0 CTTCGCTTCATTATGGCTTCGATTCCCATGCTTAATGTGTCTGCTTCACTAGCAGCAAGC 1078
consensus_6878#1 ------------------------------------------------------------
consensus_6878#0 AGAATATATAATAACAGAAAGAAAACTGGGTGGAAGTTACTTTATGTTCTCATGATTGGT 1138
consensus_6878#1 ------------------------------------------------------------
consensus_6878#0 GGCTTTCTTTCCAGTCTAGGATACTCTGGTGTAACTTTCATGGCATCCTACAATAATTAT 1198
consensus_6878#1 ------------------------------------------------------------
consensus_6878#0 CCTGGTGGATATGCTCTAAAGGCTCTACA 1227
consensus_6878#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||