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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1697 fasta sequence
[GATGCGATGATCTTAAAATATAGTATTGAGTATTGATTTCAATCATTTCTCCCTTTTATCTTTACATGTAATGTTGGCTAGAAAATTTATTATCATGCCATGTATACTCCTTTTATTCAGACAAGCAATTAGCCAGAAAATCATTGCAAATACCAATTGGTACCATGGACCTTGTACTACAATATCCTACACAATGCAGCAGCACATCTTCTACCTTGTTACTACCTGGTAGCCGTCGCATAGAAGCGGCTGAGGCCGACCTTGGTGCCGACGGCCTTGATGTCGGCCTGCACCTGCTCGCGGAATTCCCTGTAGGAGAAGGGCCTGTAGACGCCGCCGCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCACGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGAGCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGGGGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCCGAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGAGGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGAGGTAGGACGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGCGATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATCATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAGATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTTGACGCGGAGCGACTTCAGCGCAGCCGTGCCCCAGAAGTAGCCCGGCCGCGCCTTCTTCAGCTCGAAGGTGTCGCGACCCAGCAGCTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGACGCCGTGGTTCACCACGCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGACGCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTGCAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTCCATCTGCGTGGTCCTCGTCGTCGTCGTTGACGACGACTCGCCCCCACCTCCTCCTGGTTGAAGCCTGCCGCACGTGGCGGCAGCTGAGGCCCAGCCCATCAGAAGCCTACGGCCTCCATCTCAGCCCATTAGTGAGATGGCGGCCAGGCCCGGCCCGTAGTCGTTTCTGCCCTACTCGTTTTGCAGTATGATAGGATCTGCCAAAAGGCCATTCAATTGCTGCCAAAAGTGAAATTTCGGACGGTGCGGTACAGATGTTTGAAAACCGAGCTTGAAAAATTGATGATGTAGAGCAGATCAGCAGATTCTACGGACTTCTCCATTCAGCAAAGGGAATGATGCTGAGAATTTCAGTGTAGTTAATGATGTATAGCACAATGTTCTTGAAGGGAGTAGAAAAGGAGGGGTGGGAAGCCAAAGGGAACTCTTGAGAAGAAAAGAGAAACCCAATTCATAAGGGCACCCGCA]
[-] EMBL AK110729 [GATGCGATGATCTTAAAATATAGTATTGAGTATTGATTTCAATCATTTCTCCCTTTTATCTTTACATGTAATGTTGGCTAGAAAATTTATTATCATGCCATGTATACTCCTTTTATTCAGACAAGCAATTAGCCAGAAAATCATTGCAAATACCAATTGGTACCATGGACCTTGTACTACAATATCCTACACAATGCAGCAGCACATCTTCTACCTTGTTACTACCTGGTAGCCGTCGCATAGAAGCGGCTGAGGCCGACCTTGGTGCCGACGGCCTTGATGTCGGCCTGCACCTGCTCGCGGAATTCCCTGTAGGAGAAGGGCCTGTAGACGCCGCCGCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCACGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGAGCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGGGGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCCGAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGAGGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGGGGTAGGACGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGCGATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATCATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAGATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTTGACGCGGAGCGACTTCAGCGCAGCCGTGCCCCAGAAGTAGCCCGGCCGCGCCTTCTTCAGCTCGAAGGTGTCGCGACCCAGCAGCTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGACGCCGTGGTTCACCACGCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGACGCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTGCAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTC ]
[+] EMBL AK070306 [ ATCCTACACAATGCAGCAGCACATCTTCTACCTTGTTACTACCTGGTAGCCGTCGCATAGAAGCGGCTGAGGCCGACCTTGGTGCCGACGGCCTTGATGTCGGCCTGCACCTGCTCGCGGAATTCCCTGTAGGAGAAGGGCCTGTAGACGCCGCCGCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCACGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGAGCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGGGGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCCGAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGAGGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGAGGTAGGACGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGCGATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATCATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAGATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTAGACGCGGAGCGACTTCAGCGCAGCCGTGCCCCAGAAGTAGCCCGACCGCGCCTTCTTCAGCTCGAAGGTGTCGCGACCCAGCAGCTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGACGCCGTGGTTCACCACGCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGACGCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTGCAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTCCATCTGCGTGGTCCTCGTCGTCGTCGTTGACGACGACTCGCCCCCACCTCCTCCTGGTTGAAGCCTGCCGCACGTGGCGGCAGCTGAGGCCCAGCCCATCAGAAGCCTACGGCCTCCATCTCAGCCCATTAGTGAGATGGCGGCCAGGCCCGGCCCGTAGTCGTTTCTGCCCTACTCGTTTTGCAGTATGATAGGATCTGCCAAAAGGCCATTCAATTGCTGCCAAAAGTGAAATTTCGGACGGTGCGGTACAGATGTTTGAAAACCGAGCTTGAAAAATTGATGATGTAGAGCAGAT ]
[+] EMBL AK105597 [ CGGCTGAGGCCGACCTTGGTGCCGACGGCCTTGATGTCGGCCTGCACCTGCTCGCGGAATTCCCTGTAGGAGAAGGGCCTGTAGACGCCGCCGCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCACGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGAGCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGGGGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCCGAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGAGGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGAGGTAGGACGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGCGATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATCATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAGATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTTGACGCGGAGCGACTTCAGCGCAGCCGTGCCCCAGAAGTAGCCCGGCCGCGCCTTCTTCAGCTCGAAGGTGTTGCGACCCAGCAGCTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGGCGCCGTGGTTCACCACGCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGACGCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTGCAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTCCATCTGCGTGGTCCTCGTCGTCGTCGTTGACGACGACTCGCCCCCACCTCCTCCTGGTTGAAGCCTGCCGCACGTGGCGGCAGCTGAGGCCCAGCCCATCAGAAGCCTACGGCCTCCATCTCAGCCCATTAGTGAGATGGCGGCCAGGCCCGGCCCGTAGTCGTTTCTGCCCTACTCGTTTTGCAGTGTGATAGGATCTGCCAAAAGGCCATTCAATTGCTGCCAAAAGTGAAATTTCGGACGGTGCGGTACAGATGT AAACCGAGCTTGAAAAATTGATGATGTAGAGCAGATCAGCAGATTCTACGGACTTCTCCATTCAGCAAAGGGAATGATGCTGAGAATTTCAGTGTAGTTAATGATGTATAGCACAATGTTCTTGAAGGGAGTAGAAAAGGAGGGGTGGGAAGCCAAAGGGAACTCTTGAGAAGAAAAGAGAAACCCAATTCATAAGGGCACCCGCA]
consensusID : consensus_6880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 272 fasta sequence
[TATCATGCCATGTATACTCCTTTTATTCAGACCAAGCAATTAGCCAGAAAATCATTGTGGAAATACCCAATTTGTGTACCCATGGACCTTGGTACTACAATATCCTACACAATTGCAGCAGCACATCTTCTACCTTGGTTACTACCTGGTAGCCTGTCTGCATAAAAGCGGCTGAGTGCCGACCTTGTGTGCCAGACGGCGCTTGATGTCAGGGCTGACACCTGGTCGCGGAATATCCCTGTAGTGAAGAATGGTGCTGTAGACGCCTGCGC]
[-] EMBL BI810327 [TATCATGCCATGTATACTCCTTTTATTCAGACCAAGCAATTAGCCAGAAAATCATTGTGGAAATACCCAATTTGTGTACCCATGGACCTTGGTACTACAATATCCTACACAATTGCAGCAGCACATCTTCTACCTTGGTTACTACCTGGTAGCCTGTCTGCATAAAAGCGGCTGAGTGCCGACCTTGTGTGCCAGACGGCGCTTGATGTCAGGGCTGACACCTGGTCGCGGAATATCCCTGTAGTGAAGAATGGTGCTGTAGACGCCTGCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6880#0 GATGCGATGATCTTAAAATATAGTATTGAGTATTGATTTCAATCATTTCTCCCTTTTATC 60
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 TTTACATGTAATGTTGGCTAGAAAATTTATTATCATGCCATGTATACTCCTTTTATTCAG 120
consensus_6880#1 ------------------------------TATCATGCCATGTATACTCCTTTTATTCAG 30
******************************
consensus_6880#0 AC-AAGCAATTAGCCAGAAAATCATTGC--AAATACC-AATTGGTA---CCATGGACCTT 173
consensus_6880#1 ACCAAGCAATTAGCCAGAAAATCATTGTGGAAATACCCAATTTGTGTACCCATGGACCTT 90
** ************************ ******* **** ** ***********
consensus_6880#0 G-TACTACAATATCCTACACAAT-GCAGCAGCACATCTTCTACCTTG-TTACTACCTGGT 230
consensus_6880#1 GGTACTACAATATCCTACACAATTGCAGCAGCACATCTTCTACCTTGGTTACTACCTGGT 150
* ********************* *********************** ************
consensus_6880#0 AGCC-GTC-GCATAGAAGCGGCTGAG-GCCGACCTTG-GTGCC-GACGGC-CTTGATGTC 284
consensus_6880#1 AGCCTGTCTGCATAAAAGCGGCTGAGTGCCGACCTTGTGTGCCAGACGGCGCTTGATGTC 210
**** *** ***** *********** ********** ***** ****** *********
consensus_6880#0 --GGCCTGCACCTGCTCGCGGAAT-TCCCTGTAG--GAGAAGGGC-CTGTAGACGCCGCC 338
consensus_6880#1 AGGGCTGACACCTGGTCGCGGAATATCCCTGTAGTGAAGAATGGTGCTGTAGACGCCTGC 270
*** ****** ********* ********* **** ** *********** *
consensus_6880#0 GCCGATGCCGCTGGGGGCCTCGACGACGGCGTCCTCCTGCGGGAAGGCGAAGTAGCAGCA 398
consensus_6880#1 GC---------------------------------------------------------- 272
**
consensus_6880#0 CGACACCCTCTCCGTGGAGGGGCGGCTCGCGAGCACCCTGTGGCGCACGCTCTGGTACGA 458
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GCCGCCGCTGATGGCCGTCATCATGTCGCCCAGGTTGACGAGGAGCTCGCCGGGCGCGGG 518
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GGCGACGTCGCGCCACGCGCCGTCGCGGATCACCTGCAGGCCGCCGACGTGGTCCTGGCC 578
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GAGGATGATGGAGAGCACGGAGCTGTCGGTGTGGGGCTCCATCCCGAGGCAGGAGGCGGA 638
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GGAAGGGCAGGGCGGGTAGCGGTACAGGCGGAGGAAGCCCTGGCGCTCGGCGAGGTAGGA 698
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CGCCGCCTGGTGATGATCCAGGCCCAGCTCGGCGGCCAGGGCGTCGAACAGCTTGCGGGC 758
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GATGCGCGCCATGTGGTCGCCGTACTCCGCCATCAGCGCCCTGATCCGCATCCAGCCATC 818
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 ATCATCATCATCATCGCCATCGCCGACCTGCGACGACGACGACGACGAGCCGGGGACGAG 878
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 ATCGACATGGAGTCCCTCCAGCCAGTTGACCTCCTTGACGCGGAGCGACTTCAGCGCAGC 938
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CGTGCCCCAGAAGTAGCCCGGCCGCGCCTTCTTCAGCTCGAAGGTGTCGCGACCCAGCAG 998
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CTGCTTCCCCAGCTCCAGCAGCCGCCGCCGGAGCTCGCCGGGGACGCCGTGGTTCACCAC 1058
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GCGGAACGCGCCCAGATCCCGGCAGGCCGCCACCAGCGCCGCCCGGTCCTCGCCGCCGAC 1118
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GCGCTCCAGGTCCAGCGTCGGCAGCTCCAGCCTGGGCAGACCCGGCTGCAGCTGCAGCTG 1178
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 CAGCGGCAGCGGTGGCGCCTCCGGCTGCGGGAACGGCGGGCACGACGGGTCCATCTGCGT 1238
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GGTCCTCGTCGTCGTCGTTGACGACGACTCGCCCCCACCTCCTCCTGGTTGAAGCCTGCC 1298
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GCACGTGGCGGCAGCTGAGGCCCAGCCCATCAGAAGCCTACGGCCTCCATCTCAGCCCAT 1358
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 TAGTGAGATGGCGGCCAGGCCCGGCCCGTAGTCGTTTCTGCCCTACTCGTTTTGCAGTAT 1418
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GATAGGATCTGCCAAAAGGCCATTCAATTGCTGCCAAAAGTGAAATTTCGGACGGTGCGG 1478
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 TACAGATGTTTGAAAACCGAGCTTGAAAAATTGATGATGTAGAGCAGATCAGCAGATTCT 1538
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 ACGGACTTCTCCATTCAGCAAAGGGAATGATGCTGAGAATTTCAGTGTAGTTAATGATGT 1598
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 ATAGCACAATGTTCTTGAAGGGAGTAGAAAAGGAGGGGTGGGAAGCCAAAGGGAACTCTT 1658
consensus_6880#1 ------------------------------------------------------------
consensus_6880#0 GAGAAGAAAAGAGAAACCCAATTCATAAGGGCACCCGCA 1697
consensus_6880#1 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||