cluster # 6881

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Oryza sativa
cluster # 6881 cluster # 6881 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6881#0 length = 818 sequences # 3

consensus_6881#1 length = 508 sequences # 1

consensusID : consensus_6881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 818
fasta sequence

                              [TCCCCCTCCTCCTCTTTCTGTCTCGATGTCCCCGAGCTTCTTCTTTGTCGTCGTCTCGGCCTGGTCGCTAGCGCTGATGCTCGCCGCGGCGGCGAGGGGAGCCGAGGAGGAAGGAGGAGGAGGCTGCCTGGGCAGCCAGAAATGCGGCGACCTGAATATCTCCTCTCCGTTCTGGATCATCCAGGGCCAGGCGGATAAGCCGTGTGGTCCTCTGGATTACCAGGTATATTGCAACAACTCCACCGGCGTCGCAACTCTTCGAAGCTCTACAGACAGCGGGTTTGATATCATCAACATATCATATGGGGACCGTACTATGCTCGTCTTTGATGTCCATAAGCTAGCTCGCCTGAATAACTCCACCGGCTGCAGTATCCCAGTGTTTAACACCTTCGCCAAGCTGCCCATCACGTTTACAATCAGCCCTTCCAATCACAACCTCGTCTTCTACAACTGCACCGAGGCGCCGCCGGCGGAGCAGCAGCAACAACTGGGGCTCGTGGAGACGAGATGCGGTAACAACACGTTTGCTCGCCTGGGAGGGCGTTTCCACGGGGAGGGCGACTACGACAAGTACTATTTGGAAGGCTGCAGCAGAAACAGCCACCGTCTTCTTGCCGGTGCTGGAACCGCCTGATGGCAAGGCGAACGCCACCAGGTATGTGGAGCTCGTGCGTGGAGGCTTCCTCATAACATGGGGGAACCTGCCACCGCCAGTGCCTCCACCGCCAGAGCTGCCAGTGACATCTTCTGGTGCAAGCAATCCAAAGAAAATTGCAATAGGAGTTGGAGTAGGCGTCGGAACATTGTCTATTATA]

[+] EMBL CF279655             [TCCCCCTCCTCCTCTTTCTGTCTTGTTGTCCCCGAGCTTCTTCTTTGTCGTCGTCTCGGCCTGGTCGCTAGCGCTGATGCTCGCCGCGGCGGCGAGGGGAGCCTAGGAGGAAGGAGGAGGAGGCTGCCTGGGCAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CB655441             [     CTCCTCCTCTTTCTGTCTCGATGTCCCCGAGCTTCTTCTTTGTCGTCGTCTCGGCCTGGTCGCTAGCGCTGATGCTCGCCGCGGCGGCGAGGGGAGCCGAGGAGGAAGGAGGAGGAGGCTGCCTGGGCAGCCAGAAATGCGGCGACCTGAATATCTCCTCTCCGTTCTGGATCATCCAGGGCCAGGCGGATAAGCCGTGTGGTCCTCTGGATTACCAGGTATATTGCAACAACTCCACCGGCGTCGCAACTCTTCGAAGCTCTACAGACAGCGGGTTTGATATCATCAACATATCATATGGGGACCGTACTATGCTCGTCTTTGATGTCCATAAGCTAGCTCGCCTGAATAACTCCACCGGCTGCAGTATCCCAGTGTTTAACACCTTCGCCAAGCTGCCCATCACGTTTACAATCAGCCCTTCCAATCACAACCTCGTCTTCTACAACTGCACCGAGGCGCCGCCGGCGGAGCAGCAGCAACAACTGGGGCTCGTGGAGACGAGATGCGGTAACAACACGTTTGCTCGCCTGGGAGGGCGTTTCCACGGGGAGGGCGACTACGACAAGTACTATTTGGAAGGCTGCAGCAGAAACAGCCACCGTCTTCTTGCCGGTGCTGGAACCGCCTGATGGCAAGGCGAACGCCACCAGGTATGTGGAGCT                                                                                                                                                    ]
[+] EMBL CB618096             [        CTCCTC  TCTATCTCGATGGCCCCGAGCTTCTTCTTTGTCGTCGTCTCGGCCTGGTCGCTAGCGCTGATGCTCGCCGCGGCGGCGAAGGGAGCCGAGGAGGAAGGAGGAGGAGGCTGCCTGGGCAGCCAGAAATGCGGCGACCTGAATATCTCCTCTCCGTTCTGGATCATCCAGGGCCAGGCGGATAAGCCGTGTGGTACTCTGGATTTCCAGGTATATTGCAACAGCTCCACCGGCGTCGCAACTCTTCGAAGCTCTACGGACACCGGGTTTGATATCATCAACATATCATATGGGGACCGTACTATGCTCGTCTTTGATGTCCATAAGCTAGCTCGCCTGAATAGCTCCACCGGCTGCAGTATCCCAGTGTTTAACACCTTCGCCAAGCTGCCCCTCACGTTTACAATCAGCCCTTCCAATCTCAACCTCGTCTTCTACAACTGCACCAAGGCGCCGCCGGCGGAGCAGCAGCGACAACTGGGGCTCGTCGAGACGAGATGCGGTAACAACACGTTTGCTCGCCTGGGAGGGCGTTTCGACGGGAAGGGCGACTACGACAAGTACTATCTGGAAGGCTGCAGCAGCAGCAG CACCGTCTTCTCGCCGGTGCTGGAACCGCCTGATGGCAAGGCGAACGCCAGCAGGTATGTGGAGCTCGTGCGTGGAGGCTTCCTCATAACATGGGGGAACCTGCCACCGCCAGTGCCTCCACCGCCAGAGCTGCCAGTGACATCTTCTGGTGCAAGCAATCCAAAGAAAATTGCAATAGGAGTTGGAGTAGGCGTCGGAACATTGTCTATTATA]




>consensus_6881#0
TCCCCCTCCTCCTCTTTCTGTCTCGATGTCCCCGAGCTTCTTCTTTGTCGTCGTCTCGGC
CTGGTCGCTAGCGCTGATGCTCGCCGCGGCGGCGAGGGGAGCCGAGGAGGAAGGAGGAGG
AGGCTGCCTGGGCAGCCAGAAATGCGGCGACCTGAATATCTCCTCTCCGTTCTGGATCAT
CCAGGGCCAGGCGGATAAGCCGTGTGGTCCTCTGGATTACCAGGTATATTGCAACAACTC
CACCGGCGTCGCAACTCTTCGAAGCTCTACAGACAGCGGGTTTGATATCATCAACATATC
ATATGGGGACCGTACTATGCTCGTCTTTGATGTCCATAAGCTAGCTCGCCTGAATAACTC
CACCGGCTGCAGTATCCCAGTGTTTAACACCTTCGCCAAGCTGCCCATCACGTTTACAAT
CAGCCCTTCCAATCACAACCTCGTCTTCTACAACTGCACCGAGGCGCCGCCGGCGGAGCA
GCAGCAACAACTGGGGCTCGTGGAGACGAGATGCGGTAACAACACGTTTGCTCGCCTGGG
AGGGCGTTTCCACGGGGAGGGCGACTACGACAAGTACTATTTGGAAGGCTGCAGCAGAAA
CAGCCACCGTCTTCTTGCCGGTGCTGGAACCGCCTGATGGCAAGGCGAACGCCACCAGGT
ATGTGGAGCTCGTGCGTGGAGGCTTCCTCATAACATGGGGGAACCTGCCACCGCCAGTGC
CTCCACCGCCAGAGCTGCCAGTGACATCTTCTGGTGCAAGCAATCCAAAGAAAATTGCAA
TAGGAGTTGGAGTAGGCGTCGGAACATTGTCTATTATA

consensusID : consensus_6881#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 508
fasta sequence

                              [TACGACAAGTACTATTTGGAAGGCTGCAGCAGAAACAGCACCGTCTTCTTGCCGGTGCTGGAACCGCCTGATGGCAAGGCGAACGCCAGCAGGTATGTGGAGCTCGTGGGTGGAGGCTTCCTCATAACATGGGTACCTGCCTCCGCCAGTGACATCTTCTGGTAAGTTCACCCTCCCTGTTTCTATTAGGATCAAGTTCGTATAGAAAATCCACTGTATATCCTGATACTTCCGATCTCCAAGCGAGTACTAGTAGAATACGGTTCTCGCTCATCAGCGTGTAGGACAGGGAATCTGTCGATTGGCTGATAGGGTCGTCATCTTGCCCAATCGTGGCGGCTGGGCAACAGGGATGAGCAAGAATTAAACTAGAATTAAAGTGATCAAAGCAGTGGACCATGACCGTCCTTTCGCATTCCATCTCACTCCGGTGCCATTCCTTCCAATCTTCGATCCTGTTCTGGTACATGACTGAGAAGACCATGCACATCTGTTGGAATTGGAACCG]

[+] EMBL CF305901             [TACGACAAGTACTATTTGGAAGGCTGCAGCAGAAACAGCACCGTCTTCTTGCCGGTGCTGGAACCGCCTGATGGCAAGGCGAACGCCAGCAGGTATGTGGAGCTCGTGGGTGGAGGCTTCCTCATAACATGGGTACCTGCCTCCGCCAGTGACATCTTCTGGTAAGTTCACCCTCCCTGTTTCTATTAGGATCAAGTTCGTATAGAAAATCCACTGTATATCCTGATACTTCCGATCTCCAAGCGAGTACTAGTAGAATACGGTTCTCGCTCATCAGCGTGTAGGACAGGGAATCTGTCGATTGGCTGATAGGGTCGTCATCTTGCCCAATCGTGGCGGCTGGGCAACAGGGATGAGCAAGAATTAAACTAGAATTAAAGTGATCAAAGCAGTGGACCATGACCGTCCTTTCGCATTCCATCTCACTCCGGTGCCATTCCTTCCAATCTTCGATCCTGTTCTGGTACATGACTGAGAAGACCATGCACATCTGTTGGAATTGGAACCG]




>consensus_6881#1
TACGACAAGTACTATTTGGAAGGCTGCAGCAGAAACAGCACCGTCTTCTTGCCGGTGCTG
GAACCGCCTGATGGCAAGGCGAACGCCAGCAGGTATGTGGAGCTCGTGGGTGGAGGCTTC
CTCATAACATGGGTACCTGCCTCCGCCAGTGACATCTTCTGGTAAGTTCACCCTCCCTGT
TTCTATTAGGATCAAGTTCGTATAGAAAATCCACTGTATATCCTGATACTTCCGATCTCC
AAGCGAGTACTAGTAGAATACGGTTCTCGCTCATCAGCGTGTAGGACAGGGAATCTGTCG
ATTGGCTGATAGGGTCGTCATCTTGCCCAATCGTGGCGGCTGGGCAACAGGGATGAGCAA
GAATTAAACTAGAATTAAAGTGATCAAAGCAGTGGACCATGACCGTCCTTTCGCATTCCA
TCTCACTCCGGTGCCATTCCTTCCAATCTTCGATCCTGTTCTGGTACATGACTGAGAAGA
CCATGCACATCTGTTGGAATTGGAACCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6881#0      TCCCCCTCCTCCTCTTTCTGTCTCGATGTCCCCGAGCTTCTTCTTTGTCGTCGTCTCGGC 60
consensus_6881#1      ------------------------------------------------------------
                                                                                  

consensus_6881#0      CTGGTCGCTAGCGCTGATGCTCGCCGCGGCGGCGAGGGGAGCCGAGGAGGAAGGAGGAGG 120
consensus_6881#1      ------------------------------------------------------------
                                                                                  

consensus_6881#0      AGGCTGCCTGGGCAGCCAGAAATGCGGCGACCTGAATATCTCCTCTCCGTTCTGGATCAT 180
consensus_6881#1      ---------------------------------------------TACGACAAGTACTAT 15
                                                                   * **    * *  **

consensus_6881#0      CCAGGGCCAGGCGG-ATAAGCCGTGTGGTCCTCTGGATTACCAGGTATATTGCAACAACT 239
consensus_6881#1      TTGGAAGGCTGCAGCAGAAACAGCACCGTCTTC----TTGCCGG---TGCTGGAACCGCC 68
                         *      ** * * ** * *    *** **    ** ** *   *  ** ***  * 

consensus_6881#0      CCACCGGCGTCGCAACTCTTCGAAGCTCTACAGACAGCGGGTTTGATATCATCAACATAT 299
consensus_6881#1      TGAT-GGCAAGGCGAACGCCAGCAGGTATGTGGAGCTCGTGGGTGGAGGCTTCCTCATA- 126
                        *  ***   ** *      * ** * *   **   ** *  **    * **  **** 

consensus_6881#0      CATATGGGGACCGTACTATGCTCGTCTTTGATGTCCATAAGCTAGCTCGCCTGAATAACT 359
consensus_6881#1      -ACATGGGTACC----TGCCTCCGCCAGTGACATCTTCTGGTAAGTTCACCC-------- 173
                       * ***** ***    *     ** *  ***  **     *  ** ** **         

consensus_6881#0      CCACCGGCTGCAGTATCCCAGTGTTTAACACCTTCGCCAAGCTGCCCATCACGTTTACAA 419
consensus_6881#1      ---------------TCCCTGTTTCTATTAGGATCA--AGTTCGTATAGAAAATCCACTG 216
                                     **** ** * **  *   **   *    *   *  *  *  **  

consensus_6881#0      TCAGCCCTTCCAATCACAACCTCGTCTTCTACAACTGCACCGAGGCGCCGCCGGCGGAGC 479
consensus_6881#1      TATATCCTGATACTTCCGATCTC-CAAGCGAGTACTAGTAGAATACGGTTCTCGCTCATC 275
                      *    ***   * *  * * ***     * *  ***      *  **   *  **  * *

consensus_6881#0      AGCAGCAACAACTGGGGCTCGTGGAGACGAGATGCGGTAACAACACGTTTGCTCGCCTGG 539
consensus_6881#1      AGCGTGTAGGACAGGGAATC-TGTCGATTGGCTGATAGGGTCGTCATCTTGCCCAATCGT 334
                      ***    *  ** ***  ** **  **   * **              **** *    * 

consensus_6881#0      GAGGGCGTTTCCACGGGGA-GGGCGACTACGACAAGTACTATTTGGAAGGCTGCAGCAG- 597
consensus_6881#1      GGCGGCTGGGCAACAGGGATGAGCAAGAATTA-AACTAGAATTAAAGTGATCAAAGCAGT 393
                      *  ***    * ** **** * ** *  *  * ** **  ***     *     ***** 

consensus_6881#0      AAACAGCCACCGTCTTCTTGCCGGTGCTGGAACCGCCTGATGGCAAGGCGAACGCCACCA 657
consensus_6881#1      GGACCATGACCGTCCTTTCGC--------ATTCCATCTCACTCCGGTGCCATTCCTTCCA 445
                        **    ****** * * **           **  ** *   *   ** *   *  ***

consensus_6881#0      GGTATGTGGAGCTCGTGCGTGGAGGCTTCCTCATAACATGGGGGA-ACCTGCCACCGCCA 716
consensus_6881#1      ATCTT--CGATCCTGTTC-TGGTACATGACTGAGAAGACCATGCACATCTGTTGGAATTG 502
                          *   ** *  ** * ***    *  ** * ** *    * * * ***         

consensus_6881#0      GTGCCTCCACCGCCAGAGCTGCCAGTGACATCTTCTGGTGCAAGCAATCCAAAGAAAATT 776
consensus_6881#1      GAACCG------------------------------------------------------ 508
                      *  **                                                       

consensus_6881#0      GCAATAGGAGTTGGAGTAGGCGTCGGAACATTGTCTATTATA 818
consensus_6881#1      ------------------------------------------