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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1846 fasta sequence
[GCCGCCGCCGCTTTTTCTTCCCTCCCCCGCTTCTCCTCGCCGGCGACGACGACTTGCCCCTCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCCTCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGATCAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAGCTAGCTTTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCATCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGTGCGTTGCGCTCGAGGTCGGCATAGCCGCCGCCGCCGCCTCTCTCCCTCCTAGCTCTCCCTTACGAGAA-GTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAAGCA-CTTGAAGGCTTGAAGTCGATATGGCACAATTTTGCTA-TGGGGAAGAAGATGTGTTGTTGCAATGGGCCAAATAATCANCTCCTTTAATGNTCGATCCAATCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTGCTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCTGGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCCATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTTCAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTTATTACACAGTTATTTTGTGAGTTTACATGATGCTTCTTTGAAATGAAAAATCTCCAAGAATCTGACAAAGCTAGAAACTCAGGTAAGTTTGACAAATGTCACTATATTGTTTTGATTTTGCACATGATTGTGTGATGAAGTTCGCTTTGTCAGTTAATTTGTACCCACCGAAGGTTCCATATCAGATCCCACATGTCTGAATGCTCATTTCTACTATAACCTTCCATTCCCAAATTCTTTGTTTCTTTACATACATGAGCACTCCTTAATTTGTTGACAAATCAAGTTTGCTTCATAAATGTAATATTGGTATCGGCAAGTAACAACAAATCTGAAACTATTATTTGCTTTGGAGGTAAACATGTTCTATACATATAATTGGGTTGCGTGCTTTTTTTTATAGGGCATTGTTAGCAACTTACCATATAACAGGACTGTCAGATTTTTTATGTGTTGCTTGTTCTTCGCTTTGTACATGTCCATTTTGGTAAATGGTGTACGATTTTTTTTCTGGACTTATGTTCTTCAAGCATTGTAGGGTTGCAGTCTTATTAGTCATCTACTACTGTAGCCTTATCTATAATGTGCATTTTGGAAGTGACGTTTCAGATTTTGGTATTAACTATAAAGACTGAGAACCCATGCCACATACTTTGTAGAACTCCCATGTGTATTGGAGTAATGTGATTAGTTATCCAAAACATTATTGTTCATCAGAAATGATTTCAGTAATGTATTACTTGGGCATATGACTTTTCTAAAGAGTGTCTTATCTAACCAACTAGCTTTTCTGTTGCCTCATAAAAAACATTTAGTTAATCAGAGACTATTTTAGGGGGGAGCTGTCCTACAAATGAATTTCTGCTTCATTAACATAAGCAGATGTTTC]
[+] EMBL AU070287 [GCCGCCGCCGCTTTTTCTTCCCTCCCCCGCTTCTCCTCGCCGGCGACGACGACTTGCCCCTCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCCTCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGATCAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAG TAGCTTTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCATCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGTGCGTTGCGCTCGAGGTCGGCATAGCCGCCGCCGCCGCCTCTCTCCCTCCTAGCTCTCCCTTACGAGAA GTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAAGCA CTTGAAGGCTTGAAGTCGATATGGCACAATTTTGCTA TGGGGAAGAAGATGTGTTGTTGCAATGGGCCAAATAATCANCTCCTTTAATGNTCGATCCAATCATGATCTTCCTCCCAT ]
[+] EMBL AK067044 [ TTCCCTCCCCCGCTTCTCCTCGCCGGCGACGACGACTTGCCCCTCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCCTCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGATCAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAGCTAGCTTTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCATCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGTGCGTTGCGCTCGAGGTCGGCATAGCCGCCGCCGCCGCCTCTCTCCCTCCTAGCTCTCCCTTACGAGAAGGTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGAT GGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAGGCACCTTGAGGGCTTGAGGTCGATATGGCACAATTTTGCTACTGGGGAAGAAGATGTGTTGTTGCAAT GGCCAAATAATCACCTCCTTT ATGCTCGATCCACTCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTGCTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCTGGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCCATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTTCAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTTATTACACAGTTATTTTGTGAGTTTACATGATGCTTCTTTGAAATGAAAAATCTCCAAGAATCTGACAAAGCTAGAAACTCAGGTAAGTTTGACAAATGTCACTATATTGTTTTGATTTTGCACATGATTGTGTGATGAAGTTCGCTTTGTCAGTTAATTTGTACCCACCGAAGGTTCCATATCAGATCCCACATGTCTGAATGCTCATTTCTACTATAACCTTCCATTCCCAAATTCTTTGTTTCTTTACATACATGAGCACTCCTTAATTTGTTGACAAATCAAGTTTGCTTCATAAATGTAATATTGGTATCGGCAAGTAACAACAAATCTGAAACTATTATTTGCTTTGGAGGTAAACATGTTCTATACATATAATTGGGTTGCGTGCTTTTTTTTATAGGGCATTGTTAGCAACTTACCATATAACAGGACTGTCAGATTTTTTATGTGTTGCTTGTTCTTCGCTTTGTACATGTCCATTTTGGTAAATGGTGTACGATTTTTTTTCTGGACTTATGTTCTTCAAGCATTGTAGGGTTGCAGTCTTATTAGTCATCTACTACTGTAGCCTTATCTATAATGTGCATTTTGGAAGTGACGTTTCAGATTTTGGTATTAACTATAAAGACTGAGAACCCATGCCACATACTTTGTAGAACTCCCATGTGTATTGGAGTAATGTGATTAGTTATCCAAAACATTATTGTTCATCAGAAATGATTTCAGTAATGTATTACTTGGGCATATGACTTTTCTAAAGAGTGTCTTATCTAACCAACTAGCTTTTCTGTTGCCTCATAAAAAACATTTAGTTAATCAGAGACTATTTTAGGGGGGAGCTGTCCTACAAATGAATTTCTGCTTCATTAACATAAGCAGATGTTTC]
[+] EMBL CB640801 [ CCGCTTCTCCTCGCCGGCGACGACGACTTGCCCCTCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCCTCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGATCAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAGCTAGCTTTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCATCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGT ]
consensusID : consensus_6883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[CCCATCGCCTGATTTTGGGAGAAGGTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAGGCACCTTGAGGGCTTGAGGTCGATATGGCACAATTTTGCTACTGGGGAAGAAGATGTGTTGTTGCAATGGCCAAATAATCACCTCCTTTATGCTCGATCCACTCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTGCTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCTGGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCCATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTTCAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTTATTACACAGTTATTTTGTGAGT]
[+] EMBL CB638184 [CCCATCGCCTGATTTTGGGAGAAGGTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGAGCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTCGATGTTCTACCTCCAGCGTTGATGGTAATCCCAGGCACCTTGAGGGCTTGAGGTCGATATGGCACAATTTTGCTACTGGGGAAGAAGATGTGTTGTTGCAATGGCCAAATAATCACCTCCTTTATGCTCGATCCACTCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTGCTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCTGGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCCATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTTCAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTTATTACACAGTTATTTTGTGAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6883#0 GCCGCCGCCGCTTTTTCTTCCCTCCCCCGCTTCTCCTCGCCGGCGACGACGACTTGCCCC 60
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 TCGAGCTCTCCCCTATCCTGCCCATCTCCTGGCGCTCCCTCCCTCCCTTCGCTTGCATCC 120
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 TCACGCCATCGTCGGCCCCGCCTTCCCCTTCTCATCTGTTCCCAGCGATGGCATGGGGAT 180
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 CAATCTGCTGACCCAGGCCCTTCTCTTCTAGCAGGGGGAGTGGACCATGCGGAGCTAGCT 240
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 TTGGGGGCACTGTGATAGAGATCGATGGTGTGGCTGTGTGGGGATCGATCTGTTGGCCCA 300
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 TCGCCTGATTTTGGGTAGGTGCACTCAAGCTCAACATGAAGTTCTCAATCCAGTGCGTTG 360
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 CGCTCGAGGTCGGCATAGCCGCCGCCGCCGCCTCTCTCCCTCCTAGCTCTCCCTTACGAG 420
consensus_6883#1 ---------------------------------------CCCATCGCCTGATTTTGGGAG 21
* * * ** ** ***
consensus_6883#0 AAG-TGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGGGA 479
consensus_6883#1 AAGGTGAGGGACTGAGTGGAGACCAGAGACAGCGCAACCACTCGATCCGGTGGGATGG-A 80
*** ****************************************************** *
consensus_6883#0 GCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTC 539
consensus_6883#1 GCCTGACCTCGACTTTGGTTCAAGTTGGTGGCGTGCGGCTCTGCAATTTGAATTGCGTTC 140
************************************************************
consensus_6883#0 GATGTTCTACCTCCAGCGTTGATGGTAATCCCAAGCAC-TTGAAGGCTTGAAGTCGATAT 598
consensus_6883#1 GATGTTCTACCTCCAGCGTTGATGGTAATCCCAGGCACCTTGAGGGCTTGAGGTCGATAT 200
********************************* **** **** ******* ********
consensus_6883#0 GGCACAATTTTGCTA-TGGGGAAGAAGATGTGTTGTTGCAATGGGCCAAATAATCANCTC 657
consensus_6883#1 GGCACAATTTTGCTACTGGGGAAGAAGATGTGTTGTTGCAATGG-CCAAATAATCACCTC 259
*************** **************************** *********** ***
consensus_6883#0 CTTTAATGNTCGATCCAATCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTG 717
consensus_6883#1 CTTTA-TGCTCGATCCACTCATGATCTTCCTCCCATTCTCTGTCTGCGCCTGCAGTGCTG 318
***** ** ******** ******************************************
consensus_6883#0 CTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCT 777
consensus_6883#1 CTTTTTCCATGAGAGTACAGCCTCTTCATTCTTCTCAGCGACTTGCTCTGGTCAGCACCT 378
************************************************************
consensus_6883#0 GGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCC 837
consensus_6883#1 GGTACTAATTGTTTGCCACCATGTCAGATTGCTAGCATCTAAAGATGCAGTTTTGCATCC 438
************************************************************
consensus_6883#0 ATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTT 897
consensus_6883#1 ATATTGCAATTACAAGGGATTTCATACACAAGTACTGCTTTGCTGAAGGATTCTGCGTTT 498
************************************************************
consensus_6883#0 CAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTT 957
consensus_6883#1 CAGTGCAGTAGTGGGATGAATCAGTGGAAAGTGAATTAATTGTTGTTTACTCTTTTACTT 558
************************************************************
consensus_6883#0 ATTACACAGTTATTTTGTGAGTTTACATGATGCTTCTTTGAAATGAAAAATCTCCAAGAA 1017
consensus_6883#1 ATTACACAGTTATTTTGTGAGT-------------------------------------- 580
**********************
consensus_6883#0 TCTGACAAAGCTAGAAACTCAGGTAAGTTTGACAAATGTCACTATATTGTTTTGATTTTG 1077
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 CACATGATTGTGTGATGAAGTTCGCTTTGTCAGTTAATTTGTACCCACCGAAGGTTCCAT 1137
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 ATCAGATCCCACATGTCTGAATGCTCATTTCTACTATAACCTTCCATTCCCAAATTCTTT 1197
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 GTTTCTTTACATACATGAGCACTCCTTAATTTGTTGACAAATCAAGTTTGCTTCATAAAT 1257
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 GTAATATTGGTATCGGCAAGTAACAACAAATCTGAAACTATTATTTGCTTTGGAGGTAAA 1317
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 CATGTTCTATACATATAATTGGGTTGCGTGCTTTTTTTTATAGGGCATTGTTAGCAACTT 1377
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 ACCATATAACAGGACTGTCAGATTTTTTATGTGTTGCTTGTTCTTCGCTTTGTACATGTC 1437
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 CATTTTGGTAAATGGTGTACGATTTTTTTTCTGGACTTATGTTCTTCAAGCATTGTAGGG 1497
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 TTGCAGTCTTATTAGTCATCTACTACTGTAGCCTTATCTATAATGTGCATTTTGGAAGTG 1557
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 ACGTTTCAGATTTTGGTATTAACTATAAAGACTGAGAACCCATGCCACATACTTTGTAGA 1617
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 ACTCCCATGTGTATTGGAGTAATGTGATTAGTTATCCAAAACATTATTGTTCATCAGAAA 1677
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 TGATTTCAGTAATGTATTACTTGGGCATATGACTTTTCTAAAGAGTGTCTTATCTAACCA 1737
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 ACTAGCTTTTCTGTTGCCTCATAAAAAACATTTAGTTAATCAGAGACTATTTTAGGGGGG 1797
consensus_6883#1 ------------------------------------------------------------
consensus_6883#0 AGCTGTCCTACAAATGAATTTCTGCTTCATTAACATAAGCAGATGTTTC 1846
consensus_6883#1 -------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||