These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6886#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1218 fasta sequence [CGTTTTGGTCCCCCTCCTGTTCGGCGACGGGCGACGTACGGCGCCACTATAAGAAACGTGCCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCCATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTTTTGCCGCTCTTCAGCCGATCGCCGGCCGAGGATCTTGAGGAGAAGCTGAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGGTCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGCCACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGCGGCGAGGGAGGACGCCGCACCGGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTGCGCATTCGCGCCGTCTTGCCCCGTCAAGAAGAAGCTCCAAAGATGTGCGGAGGATAGGTCAATGCTAGTGGCGACCTACGAGGGAGAACACAACCATGCCCTGTCCACGCAGACAACCGAATTCGTCGCCAGCGGCTGCACTACGAGCCAGCACGCCGGGGGGTCGTCGTCGTCGCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCAAGCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGGCCGCCGTCTCCGGCGAGCTCGTCACGGTGCTCTCGCCGGAGTTGAGGAGGCACCTCGTGGAGGAGGTGGTGCAAGTGCTCAAGAACGACGCCGAGTTCGTGGAGGCCGTGACCAACGCCGTGGCCGCTAGAGTTGTGGATCAAATCCCACACATTCCTGTTCATTTGTAGTTGTTTTTTTTTTTCTCTTTGAGAACGTTGATTTGTAGTTTGTAGGCAGTATATATATCCCAAAATGCTTGCAAGTATATGTACACATGTATTCGCAAATGTGAGTATATACCTATGCCGCTTTTGCTATAAAAAAAAAGA] [+] EMBL AK067834 [CGTTTTGGTCCCCCTCCTGTTCGGCGACGGGCGACGTACGGCGCCACTATAAGAAACGTGCCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCCATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTTTTGCCGCTCTTCAGCCGATCGCCGGCCGAGGATCTTGAGGAGAAGCTGAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGGTCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGCCACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGCGGCGAGGGAGGACGCCGCACCGGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTGCGCATTCGCGCCGTCTTGCCCCGTCAAGAAGAAGCTCCAAAGATGTGCGGAGGATAGGTCAATGCTAGTGGCGACCTACGAGGGAGAACACAACCATGCCCTGTCCACGCAGACAACCGAATTCGTCGCCAGCGGCTGCACTACGAGCCAGCACGCCGGGGGGTCGTCGTCGTCGCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCAAGCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGGCCGCCGTCTCCGGCGAGCTCGTCACGGTGCTCTCGCCGGAGTTGAGGAGGCACCTCGTGGAGGAGGTGGTGCAAGTGCTCAAGAACGACGCCGAGTTCGTGGAGGCCGTGACCAACGCCGTGGCCGCTAGAGTTGTGGATCAAATCCCACACATTCCTGTTCATTTGTAGTTGTTTTTTTTTTTCTCTTTGAGAACGTTGATTTGTAGTTTGTAGGCAGTATATATATCCCAAAATGCTTGCAAGTATATGTACACATGTATTCGC ] [-] EMBL CB673076 [ GGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTGCGCATTCGCGCCGTCTTGCCCCGTCAAGAAGAAGCTCCAAAGATGTGCGGAGGATAGGTCAATGCTAGTGGCGACCTACGAGGGAGAACACAACCATGCCCTGTCCACGCAGACAACCGAATTCGTCGCCAGCGGCTGCACTACGAGCCAGCACGCCGGGGGGTCGTCGTCGTCGCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCAAGCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGGCCGCCGTCTCCGGCGAGCTCGTCACGGTGCTCTCGCCGGAGTTGAGGAGGCACCTCGTGGAGGAGGTGGTGCAAGTGCTCAAGAACGACGCCGAGTTCGTGGAGGCCGTGACCAACGCCGTGGCCGCTAGAGTTGTGGATCAAATCCCACACATTCCTGTTCATTTGTAGTTG TTTTTTTTTTCTCTTTGAGAACGTTGATTTGTAGTTTGTAGGCAGTATATATATCCCAAAATGCTTGCAAGTATATGTACACATGTATTCGCAAATGTGAGTATATACCTATGCCGCTTTTGCTATAAAAAAAAAGA] consensusID : consensus_6886#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [CACTATAAGAAACGTGCCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCCATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTTTTGCCGCTCTTCAGCCGATCGCCGGTCTGTCCGTCCATCGATATGATCGATCGATCTTTGCGTGTCGTCGTCAATGGCTGATTTGGATTGTTGGTTGTTAATTCGAACATGTGTGATGTGATTGCGCGTGGGTGTGGTGGCTGGGGAGTGTGTACAGGCCGAGGATCTTGAGGAGAAGCTGAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGGTCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGCCACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGCGGCGAGGGAGGACGCCGCACCGGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTG] [+] EMBL CB673075 [CACTATAAGAAACGTGCCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCCATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTTTTGCCGCTCTTCAGCCGATCGCCGGTCTGTCCGTCCATCGATATGATCGATCGATCTTTGCGTGTCGTCGTCAATGGCTGATTTGGATTGTTGGTTGTTAATTCGAACATGTGTGATGTGATTGCGCGTGGGTGTGGTGGCTGGGGAGTGTGTACAGGCCGAGGATCTTGAGGAGAAGCTGAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGGTCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGCCACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGCGGCGAGGGAGGACGCCGCACCGGCGGTCGCCGCCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGACCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCGTGCGCGCCGACGCCGCCGACGCCACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGGGCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTG] consensusID : consensus_6886#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [GAAGGGAAAGTTTCCAAGTTTAAATTGTGCCTTGGAATTTTTGGACCCTCGGGGCTTCGTAATGGTTTATTAATGGTTAAGGCCTCCCAAAAGATGTTCCGGGAAGGTATTAGGGTCCAAATGGCTTAGTGGCCGAACCTACCGAAGGGGAGAAACAACCCCCCAATGGCCCCTTGTCCACCGCCAGACATACCCGAATTTCGTTCAGCCAGCGGTGCATACGAGCCAGCACGCCGGGGGGTCTCGTCGTCCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCCACCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGCCGC] [+] EMBL BI810138 [GAAGGGAAAGTTTCCAAGTTTAAATTGTGCCTTGGAATTTTTGGACCCTCGGGGCTTCGTAATGGTTTATTAATGGTTAAGGCCTCCCAAAAGATGTTCCGGGAAGGTATTAGGGTCCAAATGGCTTAGTGGCCGAACCTACCGAAGGGGAGAAACAACCCCCCAATGGCCCCTTGTCCACCGCCAGACATACCCGAATTTCGTTCAGCCAGCGGTGCATACGAGCCAGCACGCCGGGGGGTCTCGTCGTCCCGCTGCCGTGCTCCATCTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCCACCAGGGTCCGGATCGATCGCGAGCTGCGGCGTCGAGGCGCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6886#0 CGTTTTGGTCCCCCTCCTGTTCGGCGACGGGCGACGTACGGCGCCACTATAAGAAACGTG 60 consensus_6886#1 --------------------------------------------CACTATAAGAAACGTG 16 consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 CCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCC 120 consensus_6886#1 CCCTATTGCTGTCACGCCGTACTTCCTCCCGCCCACCGGGCAGCTAGCTTAGCTGCCGCC 76 consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 ATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTT 180 consensus_6886#1 ATGGACGACGACGGCGACGGCTCATCGTCACCGACCGACGACAGCGCCGCCGCCGGGCTT 136 consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 TTGCCGCTCTTCAGCCGATCGCCGG----------------------------------- 205 consensus_6886#1 TTGCCGCTCTTCAGCCGATCGCCGGTCTGTCCGTCCATCGATATGATCGATCGATCTTTG 196 consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 ------------------------------------------------------------ consensus_6886#1 CGTGTCGTCGTCAATGGCTGATTTGGATTGTTGGTTGTTAATTCGAACATGTGTGATGTG 256 consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 --------------------------------------CCGAGGATCTTGAGGAGAAGCT 227 consensus_6886#1 ATTGCGCGTGGGTGTGGTGGCTGGGGAGTGTGTACAGGCCGAGGATCTTGAGGAGAAGCT 316 consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 GAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGG 287 consensus_6886#1 GAGGCGGGCGATGGAGGAGAACGCGCGGCTGACGCGAGCGCTCGACGCCATTCTGGCCGG 376 consensus_6886#2 ---------GAAGGGAAAGTTTCCAAGTTTAAATTGTGCCTTGGA----ATTTT---TGG 44 ** ** ** * * * * * ** * ** *** * ** consensus_6886#0 TCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGC 347 consensus_6886#1 TCACCACGCCCACCAGCGCGCGCTCTTGGCGCCGTCGCTGTCGCCGCCGCCGCCTTCCGC 436 consensus_6886#2 ACCCTCGGGGCTTCGTAATGGTTTATTAATG--GTTAAGGCCTCCCAAAAGATGTTCCGG 102 * * * * * * * ** * ** * * ** ***** consensus_6886#0 CACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGC-----GGCGAGGGAGGACGCCGCA 402 consensus_6886#1 CACAGCAAGGGCGCCGAGCGTGTCCACCAGCTGCGC-----GGCGAGGGAGGACGCCGCA 491 consensus_6886#2 GAAGGTATTAGGGTCCAAATGGCTTAGTGGCCGAACCTACCGAAGGGGAGAAACAACCCC 162 * * * * * * * * * ** * * * * ** ** * * consensus_6886#0 CCGGCGGTCGCCG--CCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGA 460 consensus_6886#1 CCGGCGGTCGCCG--CCGCCGCCGCGTCGACGGCATGTCCGTCGAGACAGCAGCCGCCGA 549 consensus_6886#2 CCAATGGCCCCTTGTCCACCGCCAGACATACCCGAATTTCGTTCAGCCAGCGGTG--CAT 220 ** ** * * ** ***** ** * * *** ** **** * * consensus_6886#0 CCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCG--TGCGCGCCGACGCCGCCGACGC 518 consensus_6886#1 CCGCGGAGCCACGGCCCAAGGTCAGGACGGTCCGCG--TGCGCGCCGACGCCGCCGACGC 607 consensus_6886#2 ACGAGCCAGCACGCCGGGGGGTCTCGTCGTCCCGCTGCCGTGCTCCATCTCCATCAACTC 280 ** * **** * **** * ** **** * ** ** * ** * ** * consensus_6886#0 CACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGG 578 consensus_6886#1 CACCGACGCCAACAGCATGGCGGAGACCGTGAAGGATGGGTACCAATGGAGGAAGTACGG 667 consensus_6886#2 GTCGGGCCGCACGATCACACTCGA---CCTGACGAAC--CCACCAGGGTCCGGAT--CGA 333 * * * ** * ** ** * *** * * **** * * * ** consensus_6886#0 GCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTGCGCATTCGCGCC 638 consensus_6886#1 GCAGAAGGTGACGCGTGACAACCCCTACCCTAGAGCTTACTTCCGCTG------------ 715 consensus_6886#2 TCGCGAGCTGCGGCGTCGAGGCGCCGC--------------------------------- 360 * ** ** **** * ** consensus_6886#0 GTCTTGCCCCGTCAAGAAGAAGCTCCAAAGATGTGCGGAGGATAGGTCAATGCTAGTGGC 698 consensus_6886#1 ------------------------------------------------------------ consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 GACCTACGAGGGAGAACACAACCATGCCCTGTCCACGCAGACAACCGAATTCGTCGCCAG 758 consensus_6886#1 ------------------------------------------------------------ consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 CGGCTGCACTACGAGCCAGCACGCCGGGGGGTCGTCGTCGTCGCCGCTGCCGTGCTCCAT 818 consensus_6886#1 ------------------------------------------------------------ consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 CTCCATCAACTCGTCGGGCCGCACGATCACACTCGACCTGACGAACCAAGCAGGGTCCGG 878 consensus_6886#1 ------------------------------------------------------------ consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 ATCGATCGCGAGCTGCGGCGTCGAGGCGGCCGCCGTCTCCGGCGAGCTCGTCACGGTGCT 938 consensus_6886#1 ------------------------------------------------------------ consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 CTCGCCGGAGTTGAGGAGGCACCTCGTGGAGGAGGTGGTGCAAGTGCTCAAGAACGACGC 998 consensus_6886#1 ------------------------------------------------------------ consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 CGAGTTCGTGGAGGCCGTGACCAACGCCGTGGCCGCTAGAGTTGTGGATCAAATCCCACA 1058 consensus_6886#1 ------------------------------------------------------------ consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 CATTCCTGTTCATTTGTAGTTGTTTTTTTTTTTCTCTTTGAGAACGTTGATTTGTAGTTT 1118 consensus_6886#1 ------------------------------------------------------------ consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 GTAGGCAGTATATATATCCCAAAATGCTTGCAAGTATATGTACACATGTATTCGCAAATG 1178 consensus_6886#1 ------------------------------------------------------------ consensus_6886#2 ------------------------------------------------------------ consensus_6886#0 TGAGTATATACCTATGCCGCTTTTGCTATAAAAAAAAAGA 1218 consensus_6886#1 ---------------------------------------- consensus_6886#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||