cluster # 689

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Oryza sativa
cluster # 689 cluster # 689 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_689#0 length = 338 sequences # 1

consensus_689#1 length = 117 sequences # 1

consensusID : consensus_689#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 338
fasta sequence

                              [CCTTGTGGGCGTGCTGCATCTTCCTCTCTACTCCGCCACCGCGACATCGAGCATCACCATCCCGCCGTCTCTCGGTGTTTGATAATTCATGGTATAGGAATTCATCCGGAAGCACCTTGACAATAAGCCCATCGTCGAACTGCTATAGTGTGCAACTGCAGTGCTTATATTTATCTTTTCTTAGGGCAAAAGATAATCTCTGACATTGAAGTACTATGTTGCATTCTTACTTTACTGTAATTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAGTCATTGAGCTNCTCAGTATCTAATCGGTTTNGGCACCAAACTGAGAAG]

[+] EMBL C28692               [CCTTGTGGGCGTGCTGCATCTTCCTCTCTACTCCGCCACCGCGACATCGAGCATCACCATCCCGCCGTCTCTCGGTGTTTGATAATTCATGGTATAGGAATTCATCCGGAAGCACCTTGACAATAAGCCCATCGTCGAACTGCTATAGTGTGCAACTGCAGTGCTTATATTTATCTTTTCTTAGGGCAAAAGATAATCTCTGACATTGAAGTACTATGTTGCATTCTTACTTTACTGTAATTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAGTCATTGAGCTNCTCAGTATCTAATCGGTTTNGGCACCAAACTGAGAAG]




>consensus_689#0
CCTTGTGGGCGTGCTGCATCTTCCTCTCTACTCCGCCACCGCGACATCGAGCATCACCAT
CCCGCCGTCTCTCGGTGTTTGATAATTCATGGTATAGGAATTCATCCGGAAGCACCTTGA
CAATAAGCCCATCGTCGAACTGCTATAGTGTGCAACTGCAGTGCTTATATTTATCTTTTC
TTAGGGCAAAAGATAATCTCTGACATTGAAGTACTATGTTGCATTCTTACTTTACTGTAA
TTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAGTCATTGAGCT
NCTCAGTATCTAATCGGTTTNGGCACCAAACTGAGAAG

consensusID : consensus_689#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 117
fasta sequence

                              [GATAATCTCTGACATTGAAATACTATGTTGCATTCTTACTTTACTGTAATTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CA765524             [GATAATCTCTGACATTGAAATACTATGTTGCATTCTTACTTTACTGTAATTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAAAAAAAAAAAAAAAAAAAA]




>consensus_689#1
GATAATCTCTGACATTGAAATACTATGTTGCATTCTTACTTTACTGTAATTTAAACCATG
CTAATTTATATCATAACAAAATTTGAACCAGACAATAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_689#0      CCTTGTGGGCGTGCTGCATCTTCCTCTCTACTCCGCCACCGCGACATCGAGCATCACCAT 60
consensus_689#1      ------------------------------------------------------------
                                                                                 

consensus_689#0      CCCGCCGTCTCTCGGTGTTTGATAATTCATGGTATAGGAATTCATCCGGAAGCACCTTGA 120
consensus_689#1      ------------------------------------------------------------
                                                                                 

consensus_689#0      CAATAAGCCCATCGTCGAACTGCTATAGTGTGCAACTGCAGTGCTTATATTTATCTTTTC 180
consensus_689#1      ------------------------------------------------------------
                                                                                 

consensus_689#0      TTAGGGCAAAAGATAATCTCTGACATTGAAGTACTATGTTGCATTCTTACTTTACTGTAA 240
consensus_689#1      -----------GATAATCTCTGACATTGAAATACTATGTTGCATTCTTACTTTACTGTAA 49
                                ******************* *****************************

consensus_689#0      TTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAGTCATTGAGCT 300
consensus_689#1      TTTAAACCATGCTAATTTATATCATAACAAAATTTGAACCAGACAATAAAAAAAAAAAAA 109
                     *************************************************   *   *   

consensus_689#0      NCTCAGTATCTAATCGGTTTNGGCACCAAACTGAGAAG 338
consensus_689#1      AAAAAAAA------------------------------ 117
                         *  *