Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 6891 cluster # 6891       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6891#0 length = 1320 sequences # 4  

consensusID : consensus_6891#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1320
fasta sequence
                              [ACTGAACCGCCGCAGCCGCACTCCTCTCCCGCGCTCATCCGTTCGTCTGTCGTCTGTTCCGGTTGCTTTGGCGGGCAGCTAGGGTTTAGGCGCGGGGCCCTCCCGAATCCCCGATGTACGGCGTCGGCGTCGGCGGCGGCGGCGGCGGGAACTACGATGGCGGGGGAGGGAACGCCAGCTCCCTCTTCGGCGGCGGCGGATTCATGCCCTCGCAGGCGACCAACGCCGCGGAGGGGACCAGCGGCGGCGGCGGCGGCTTCCCCAAGAGTCGGAACGCCCAGGCGCTGCTCCCGCTCACCGTGAAGCAGATCATGGACGCGTCCCAGACCAACGACGACAAGTCGAATTTTGCTGTCAATGGCATGGAGGTGTCCACGGTTAGGCTTGTAGGACGCATGTTAAATAAGCTTGATCGGGTTACGGATGTATCATTCACTCTTGATGATGGTACAGGCAGGGTACCTGTGAATCGC-TGGGAAAACGATAGCACTGATACTAAGGAGATGGCTGACATTCAGAATGGTGACTATGTTATTGTCAATGGTGGTCTAAAAGGTTTTCAAGGGAAGCGTCAGGTGGTTGCTTACTCTGTGAGGCGTATAACCAACTTCAATGATGTAACACATCACTTTCTTCACTGCGTTCATGTGCACTTGGAGCTTACCAGGCCGAAGTCCCAAGTAAATGCTAATACAGCAACAGGAACTCCTAACCAAACTATGCCTAGGGATAGCATGGCGTATAACCAAAGTCCACTTACTAATCAGGCCTCAACATTTTCTGCACCACAAAATACTGGTACTGGAACAAATATGATCGACTTGGTCTTGAATGTTTTTCATGACCCAGCAGTTATGAATGATGACCATGGAGTAGGCGTAGATTATGTGAGCCGTCGTCTTAATCTACCAGAGGAAACAGTCGGGAAAATCATT-ATAGACCAAGTTGATCTGGGACATTTGTATGCCACTATCGATGACCACCA-TTACAAGTCCACAATGAATGGTTGATCGTATTCAATATTATACGTATGCTTCACAGCTTCAAGGTCGCATGGAGCCAAGAAATGTGTGCACTCCGCGAGAGTAGTTACTGCAGAGTGCCTCGCGTGATTTTTCTACAGGAGATCACCAGGCAATCAGCTTAACTGTTCAATTAAGTTGTTTATCTAAATAACTACTCCCTTGGCAGTCAGGCGAGTAGCTTGATAGCA-TGTTAGATCTTTAGGAGCTTCTTTTGTGTTTCAAACAACTATGAACGTGTTTGCAATTGAAGCATCTTATTTTCTTATGA-CAGTA-CAGGCAAGTTACTCAAAAAAAA]

[+] EMBL AK073723             [ACTGAACCGCCGCAGCCGCACTCCTCTCCCGCGCTCATCCGTTCGTCTGTCGTCTGTTCCGGTTGCTTTGGCGGGCAGCTAGGGTTTAGGCGCGGGGCCCTCCCGAATCCCCGATGTACGGCGTCGGCGTCGGCGGCGGCGGCGGCGGGAACTACGATGGCGGGGGAGGGAACGCCAGCTCCCTCTTCGGCGGCGGCGGATTCATGCCCTCGCAGGCGACCAACGCCGCGGAGGGGACCAGCGGCGGCGGCGGCGGCTTCCCCAAGAGTCGGAACGCCCAGGCGCTGCTCCCGCTCACCGTGAAGCAGATCATGGACGCGTCCCAGACCAACGACGACAAGTCGAATTTTGCTGTCAATGGCATGGAGGTGTCCACGGTTAGGCTTGTAGGACGCATGTTAAATAAGCTTGATCGGGTTACGGATGTATCATTCACTCTTGATGATGGTACAGGCAGGGTACCTGTGAATCGC TGGGAAAACGATAGCACTGATACTAAGGAGATGGCTGACATTCAGAATGGTGACTATGTTATTGTCAATGGTGGTCTAAAAGGTTTTCAAGGGAAGCGTCAGGTGGTTGCTTACTCTGTGAGGCGTATAACCAACTTCAATGATGTAACACATCACTTTCTTCACTGCGTTCATGTGCACTTGGAGCTTACCAGGCCGAAGTCCCAAGTAAATGCTAATACAGCAACAGGAACTCCTAACCAAACTATGCCTAGGGATAGCATGGCGTATAACCAAAGTCCACTTACTAATCAGGCCTCAACATTTTCTGCACCACAAAATACTGGTACTGGAACAAATATGATCGACTTGGTCTTGAATGTTTTTCATGACCCAGCAGTTATGAATGATGACCATGGAGTAGGCGTAGATTATGTGAGCCGTCGTCTTAATCTACCAGAGGAAACAGTCGGGAAAATCATT ATAGACCAAGTTGATCTGGGACATTTGTATGCCACTATCGATGACCACCA TTACAAGTCCACAATGAATGGTTGATCGTATTCAATATTATACGTATGCTTCACAGCTTCAAGGTCGCATGGAGCCAAGAAATGTGTGCACTCCGCGAGAGTAGTTACTGCAGAGTGCCTCGCGTGATTTTTCTACAGGAGATCACCAGGCAATCAGCTTAACTGTTCAATTAAGTTGTTTATCTAAATAACTACTCCCTTGGCAGTCAGGCGAGTAGCTTGATAGCA TGTTAGATCTTTAGGAGCTTCTTTTGTGTTTCAAACAACTATGAACGTGTTTGCAATTGAAGCATCTTATTTTCTTATGA CAGTA CAGGC                 ]
[+] EMBL AU090513             [                                                                                          CGCGGGGCCCTCCCGAATCCCCGATGTACGGCGTCGGCGTCGGCGGCGGCGGCGGCGGGAACTACGATGGCGGGGGAGGGAACGCCAGCNCCCTCTTCGGCGGCGGCGGATTCATGCNCTCGCAGGCGACCAACGCCGCGGAGGGGACCAGCNGCGGCGGCGGCGGCTTCCCCAAGAGTTGGAACGCCCAGGCGCTGCTCCCGCTCACCGTGAAGCAGATCATGGACGCGTCCCAGAACAACGACGACAAGT GAATTTTGCTGT AATGGCATGGAGGTGTCCACGGTTAGGCTTTTAGGACGCATGTTAAATAAGCTTGATCGGGTTAACGATGTTTTAATCACTCTTGATGATGGTANAGGCAAGGTANCTTTTAATTGCTTGGGAAAACGATAACCCTta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BI809535             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AACAGTCGGGAAAATCATTGATAGACCAAGTTGATCTGGGACATTTGTATGCCACTATCGATGACCACCAGTTACAAGTCCACAATGAATGGTTGATCGTATTCAATGTTATACGTATGCTTCACAGCTTCAAGGTCGCATGGAGCCAAGAAATGTGTGCACTCCGCGAGAGTAGTTACTGCAGAGTGCCTCGCGTGATTTTTCTACAGGAGATCACCAGGCAATCAGCTTAACTGTTCAATTAAGTTGTTTATCTAAATAACTACTCCCTTGGCAGTCAGGCGAGTAGCTTGATAGCACTGTTAGATCTTTAGGAG   CTTTTGTGTTTCAAACAACTATGAACGTGTTTGCAATTGAAGCATCTTATTTTCTTATGACCAGTACCAGGCAAGTTACTCAAAAAAAA]
[+] EMBL AU032338             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AAATAACTACTCCCTTGGCAGTCAGGCGAGTAGCTTGATAGCA TGTTAGATCTTTAGGAGCTTCTTTTGTGTTTCAAACAACTATGAACGTGTTTGCAATTGAAGCATCTTATTTTCTTATGA CAaaa                       ]


>consensus_6891#0 ACTGAACCGCCGCAGCCGCACTCCTCTCCCGCGCTCATCCGTTCGTCTGTCGTCTGTTCC GGTTGCTTTGGCGGGCAGCTAGGGTTTAGGCGCGGGGCCCTCCCGAATCCCCGATGTACG GCGTCGGCGTCGGCGGCGGCGGCGGCGGGAACTACGATGGCGGGGGAGGGAACGCCAGCT CCCTCTTCGGCGGCGGCGGATTCATGCCCTCGCAGGCGACCAACGCCGCGGAGGGGACCA GCGGCGGCGGCGGCGGCTTCCCCAAGAGTCGGAACGCCCAGGCGCTGCTCCCGCTCACCG TGAAGCAGATCATGGACGCGTCCCAGACCAACGACGACAAGTCGAATTTTGCTGTCAATG GCATGGAGGTGTCCACGGTTAGGCTTGTAGGACGCATGTTAAATAAGCTTGATCGGGTTA CGGATGTATCATTCACTCTTGATGATGGTACAGGCAGGGTACCTGTGAATCGCTGGGAAA ACGATAGCACTGATACTAAGGAGATGGCTGACATTCAGAATGGTGACTATGTTATTGTCA ATGGTGGTCTAAAAGGTTTTCAAGGGAAGCGTCAGGTGGTTGCTTACTCTGTGAGGCGTA TAACCAACTTCAATGATGTAACACATCACTTTCTTCACTGCGTTCATGTGCACTTGGAGC TTACCAGGCCGAAGTCCCAAGTAAATGCTAATACAGCAACAGGAACTCCTAACCAAACTA TGCCTAGGGATAGCATGGCGTATAACCAAAGTCCACTTACTAATCAGGCCTCAACATTTT CTGCACCACAAAATACTGGTACTGGAACAAATATGATCGACTTGGTCTTGAATGTTTTTC ATGACCCAGCAGTTATGAATGATGACCATGGAGTAGGCGTAGATTATGTGAGCCGTCGTC TTAATCTACCAGAGGAAACAGTCGGGAAAATCATTATAGACCAAGTTGATCTGGGACATT TGTATGCCACTATCGATGACCACCATTACAAGTCCACAATGAATGGTTGATCGTATTCAA TATTATACGTATGCTTCACAGCTTCAAGGTCGCATGGAGCCAAGAAATGTGTGCACTCCG CGAGAGTAGTTACTGCAGAGTGCCTCGCGTGATTTTTCTACAGGAGATCACCAGGCAATC AGCTTAACTGTTCAATTAAGTTGTTTATCTAAATAACTACTCCCTTGGCAGTCAGGCGAG TAGCTTGATAGCATGTTAGATCTTTAGGAGCTTCTTTTGTGTTTCAAACAACTATGAACG TGTTTGCAATTGAAGCATCTTATTTTCTTATGACAGTACAGGCAAGTTACTCAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)