cluster # 6893

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Oryza sativa
cluster # 6893 cluster # 6893 Sequences # 4 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6893#0 length = 1342 sequences # 4
consensusID : consensus_6893#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1342
fasta sequence
                              [TCACTCTCCAGAAGCTATCATGGCTTCATCCAAGACTGTTCTTTCTGCAATTTTCACTGCTTCTCTGTGCTTCACTGTAGCTCTTGCTTTCCCTGCTCACCATGAGGATCTTCACCCAGTTGTGCAGAGCCCACCAAAGCCAGTTCTTTCTCCAGATTACTATAAGGCTACATGCCCACAAGCTGATGAGATTGTGGTCTCTGTCCTAAAGAAGGCTATTGCCAAGGAGCAGAGGATTGCTGCTTCTCTTCTCAGGCTCCTGTTCCATGACTGCTTTGTTCAGGGATGCGACGCGTCGGTTTTGTTGGATGACAGTGAAGAATTCGTGAGCGAGAAAAAGGCTATTCCTAACAAAAATTCTATTAGAGGATTTGAAGTTATAGACGAGATCAAGGCTGCAC-TTGAAGAAGCTTGTCCACACACAGTCTCTTGTGCTGACACCATTGCCCTAGCTGCGAGAGGTTCAACAGTTCTGAGCGGTGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCANAGGCAGCATATATGAAATTAGCANACAAGAACCTTCCTCCACCANATGCGACACTGCATCGTCTTGTGAAATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGT-CAGGAAG-CCA-CACCATTGGAAT-GGCCAGATGTGTGAGCTTCAAGCAGAGGCTCTACAACCAGCACAGAGACAACC-AGCCTGACAAAACGCTAG-AGAGAATGTTCTACTCCACACT-GGCCTC-AACATGCCCACGCAACGGCGGTGACAACAACTTAC-GCCCACTGGAGTTTGCTACCCCTTCGAAATTCGACAACACCTATTACAAGCTGCTGATCGAGGGAAGAGGGCTCCTCAATTCAGATGAAGTTCTGTGGACAGGACGAGACCCGCAGATCGCGGGTCTCGTCAGAAGCTATGCAGAAAACGAACCGCTG-TCTTCGAGCACTACGTGAACTCGATAACCAAGATGGGGAACATCAATCCCCTCACTGGTTACGACGGAGAAATCCGCAAGAACTGCCGTGTGGTTAACAAGAAGATCTAGCATATGAAAGCGGGTTCGGTTTAATTTGCATCAATATATTTCCTTTGCTTTTGGTCACCGTTGTAATTTAGAGATTGTTTTCCAGTTTGGATGTCACCACGCAAGTGTGGTGGCATGAGGTGTAATTGCAGTCTGCAAGCCCTGTCTGCTTTTCTTTTTCAAAATTAATCCTGTTTCTTTTTTGTACTCAATGTAATTCCAGTCCTTTCGATGAATGTTATCACATCGTCTCTTAAAAGTCAAAAGTCACCAATTTGTTTTGCCAAAAAAAAAAAAAAAA]

[+] EMBL CA755163             [TCACTCTCCAGAAGCTATCATGGCTTCATCCAAGACTGTTCTTTCTGCAATTTTCACTGCTTCTCTGTGCTTCACTGTAGCTCTTGCTTTCCCTGCTCACCATGAGGATCTTCACCCAGTTGTGCAGAGCCCACCAAAGCCAGTTCTTTCTCCAGATTACTATAAGGCTACATGCCCACAAGCTGATGAGATTGTGGTCTCTGTCCTAAAGAAGGCTATTGCCAAGGAGCAGAGGATTGCTGCTTCTCTTCTCAGGCTCCTGTTCCATGACTGCTTTGTTCAGGGATGCGACGCGTCGGTTTTGTTGGATGACAGTGAAGAATTCGTGAGCGAGAAAAAGGCTATTCCTAACAAAAATTCTATTAGAGGATTTGAAGTTATAGACGAGATCAAGGCTGCAC TTGAAGAAGCTTGTCCACACACAGTCTCTTGTGCTGACACCATTGCCCTAGCTGCGAGAGGTTCAACAGTTCTGAGCGGTGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCANAGGCAGCATATATGAAATTAGCANACAAGAACCTTCCTCCACCANATGCGACACTGCATCGTCTTGTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU032412             [                                      TTCTTTCTGCAATTTTCACTGCTTCTCTGTGCTTCACTGTAGCTCTTGCTTTCCCTGCTCACCATGAGGATCTTCACCCAGTTGTGCAGAGCCCACCAAAGCCAGTTCTTTCTCCAGATTACTATAAGGCTACATGCCCACAAGCTGATGAGATTGTGGTCTCTGTCCTAAAGAAGGCTATTGCCAAGGAGCAGAGGATTGCTGCTTCTCTTCTCAGGCTCCTGTTCCATGACTGCTTTGTTCAGGGATGCGACGCGTCGGTTTTGTTGGATGACAGTGAAGAATTCGTGAGCGAG AAAAGGCTATTCCTAACAAAAATTCTATTAGAGGATTTGAAGTTATAGACGAGATCAAGGCTGCACTTTNAAGAAGCTTGTCCACAAACAGTCTCTTGNGCTGAAACAATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU081575             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   cGCTGCGAGAGGTTCAACAGTTCTGAGCGGTGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCAAAGGCAGCATATATGAAATTAGCAAACAAGAACCTTCCTCCACCAAATGCGACACTGCATCGTCTTGTGAAATTCTTTGAAAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGT CAGGAAG CCA CACCATTGGAAT GGCCAGATGTGTGAGCTTCAAGCAGAGGCTCTACAACCAGCACAGAGACAACC AGCCTGACAAAACGCTAG AGAGAATGTTCTACTCCACACT GGCCTC AACATGCCCACGCAACGGCGGTGACAACAACTTAC GCCCACTGGAGTTTGCTACCCCTTCGAAATTCGACAACACCTATTACAAGCTGCTGATCGAGGGAAGAGGGCTCCTCAATTCAGATGAAGTTCTGTGGACAGGACGAGACCCGCAGATCGCGGGTCTCGTCAGAAGCTATGCAGAAAACGAACCGCTG TCTTCGAGCACTACGTGAACTCGATAACCAAG                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU081576             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         actTGTCCAGAAAGCCCACCACCATTGNAATGGGCCAAATGTGTAAG TTCAAGCAGAGGCTCTACAACCAGCACAGAGGCAACCAAGCCTGACAAAACGCTAGAAAAGAATGTTCTACTCCACANTNGGCCTCAAACATGCCCACGCAACGGCGGTGACAACAACTTACGGCCCACTGNAGTTTGCTACCCCTTCGAAATTCGACAACACCTATTACAAGCTGCTGATCGAGGGAAGAGGGCTCCTCAATTCAGATGAAGTTCTGTGGACAGGACGAGACCCGCAGATCGCGGGTCTCGTCAGAAGCTATGCAGAAAACGAACCGCTGTTCTTCGAGCACTACGTGAACTCGATAACCAAGATGGGGAACATCAATCCCCTCACTGGTTACGACGGAGAAATCCGCAAGAACTGCCGTGTGGTTAACAAGAAGATCTAGCATATGAAAGCGGGTTCGGTTTAATTTGCATCAATATATTTCCTTTGCTTTTGGTCACCGTTGTAATTTAGAGATTGTTTTCCAGTTTGGATGTCACCACGCAAGTGTGGTGGCATGAGGTGTAATTGCAGTCTGCAAGCCCTGTCTGCTTTTCTTTTTCAAAATTAATCCTGTTTCTTTTTTGTACTCAATGTAATTCCAGTCCTTTCGATGAATGTTATCACATCGTCTCTTAAAAGTCAAAAGTCACCAATTTGTTTTGCCAAAAAAAAAAAAAAAA]




>consensus_6893#0
TCACTCTCCAGAAGCTATCATGGCTTCATCCAAGACTGTTCTTTCTGCAATTTTCACTGC
TTCTCTGTGCTTCACTGTAGCTCTTGCTTTCCCTGCTCACCATGAGGATCTTCACCCAGT
TGTGCAGAGCCCACCAAAGCCAGTTCTTTCTCCAGATTACTATAAGGCTACATGCCCACA
AGCTGATGAGATTGTGGTCTCTGTCCTAAAGAAGGCTATTGCCAAGGAGCAGAGGATTGC
TGCTTCTCTTCTCAGGCTCCTGTTCCATGACTGCTTTGTTCAGGGATGCGACGCGTCGGT
TTTGTTGGATGACAGTGAAGAATTCGTGAGCGAGAAAAAGGCTATTCCTAACAAAAATTC
TATTAGAGGATTTGAAGTTATAGACGAGATCAAGGCTGCACTTGAAGAAGCTTGTCCACA
CACAGTCTCTTGTGCTGACACCATTGCCCTAGCTGCGAGAGGTTCAACAGTTCTGAGCGG
TGGCCCATACTGGGAACTTCCACTAGGAAGGAAGGATTCANAGGCAGCATATATGAAATT
AGCANACAAGAACCTTCCTCCACCANATGCGACACTGCATCGTCTTGTGAAATTCTTTGA
AAGGCAAGGACTGGATAAGGTGGACCTTGTGGCACTGTCAGGAAGCCACACCATTGGAAT
GGCCAGATGTGTGAGCTTCAAGCAGAGGCTCTACAACCAGCACAGAGACAACCAGCCTGA
CAAAACGCTAGAGAGAATGTTCTACTCCACACTGGCCTCAACATGCCCACGCAACGGCGG
TGACAACAACTTACGCCCACTGGAGTTTGCTACCCCTTCGAAATTCGACAACACCTATTA
CAAGCTGCTGATCGAGGGAAGAGGGCTCCTCAATTCAGATGAAGTTCTGTGGACAGGACG
AGACCCGCAGATCGCGGGTCTCGTCAGAAGCTATGCAGAAAACGAACCGCTGTCTTCGAG
CACTACGTGAACTCGATAACCAAGATGGGGAACATCAATCCCCTCACTGGTTACGACGGA
GAAATCCGCAAGAACTGCCGTGTGGTTAACAAGAAGATCTAGCATATGAAAGCGGGTTCG
GTTTAATTTGCATCAATATATTTCCTTTGCTTTTGGTCACCGTTGTAATTTAGAGATTGT
TTTCCAGTTTGGATGTCACCACGCAAGTGTGGTGGCATGAGGTGTAATTGCAGTCTGCAA
GCCCTGTCTGCTTTTCTTTTTCAAAATTAATCCTGTTTCTTTTTTGTACTCAATGTAATT
CCAGTCCTTTCGATGAATGTTATCACATCGTCTCTTAAAAGTCAAAAGTCACCAATTTGT
TTTGCCAAAAAAAAAAAAAAAA
clustalw multiple alignements is not computed in this case