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Oryza sativa
cluster # 6894 cluster # 6894       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6894#0 length = 1528 sequences # 3  
consensus_6894#1 length = 366 sequences # 1  

consensusID : consensus_6894#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1528
fasta sequence
                              [AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAACGGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATATACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAAGAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAACGTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTGCCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTGGCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCACCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGTCCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCTCGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGTCTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAGGGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTACAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGGCCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATACTGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCTATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGGTCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAGAAATCATTGTGAAAAGAAATAAGTCTAT]

[+] EMBL AK070670             [AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAACGGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATATACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAAGAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAACGTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTGCCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTGGCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCACCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGTCCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCTCGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGTCTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAGGGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTACAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGGCCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATACTGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCTATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGGTCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAGAAATCATTGTGAAAAGAAATAAGTCTAT]
[+] EMBL OSR24121A            [                                                                                                                                                                       GGAAAAGAAAAAAGAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAACGTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGA CTGCTCCGCCGTCGTGCCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTGGCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCACCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGTCCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU032462             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCTCGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGTCTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAGGGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTACAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGGCCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATACTGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCTATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTaaaaaaaaa                                                                                                    ]


>consensus_6894#0 AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAAC GGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATA TACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAA GAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAAC GTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTG CCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTG GCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCA CCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGT CCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGT CTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTC GGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCC GAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGG AGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGG CCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGAT CACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCT CGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGT CTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCC GGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAG GGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAG GGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTA CAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGG CCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATAC TGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCT ATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGG TCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAG AAATCATTGTGAAAAGAAATAAGTCTAT



consensusID : consensus_6894#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence
                              [CCGCTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCAC]

[+] EMBL OSS10523A            [CCGCTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCAC]


>consensus_6894#1 CCGCTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGT CGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTT TTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAG GCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCAC GGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAG CGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAA GATCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6894#0      AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAAC 60
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      GGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATA 120
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      TACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAA 180
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      GAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAAC 240
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      GTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTG 300
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      CCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTG 360
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      GCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCA 420
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      CCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGT 480
consensus_6894#1      --------------------------------------------------------CCG- 3
                                                                              *** 

consensus_6894#0      CCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGT 540
consensus_6894#1      CTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGTCGT 63
                      * *   **     *  * ******************* ********** *** *******

consensus_6894#0      CTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTC 600
consensus_6894#1      CTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTC 123
                      ************************************************************

consensus_6894#0      GGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCC 660
consensus_6894#1      GGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCC 183
                      ************************************************************

consensus_6894#0      GAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGG 720
consensus_6894#1      GAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGG 243
                      ************************************************************

consensus_6894#0      AGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGG 780
consensus_6894#1      AGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGG 303
                      ************************************************************

consensus_6894#0      CCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGAT 840
consensus_6894#1      CCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGAT 363
                      ************************************************************

consensus_6894#0      CACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCT 900
consensus_6894#1      CAC--------------------------------------------------------- 366
                      ***                                                         

consensus_6894#0      CGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGT 960
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      CTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCC 1020
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      GGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAG 1080
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      GGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAG 1140
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      GGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTA 1200
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      CAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGG 1260
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      CCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATAC 1320
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      TGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCT 1380
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      ATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGG 1440
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      TCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAG 1500
consensus_6894#1      ------------------------------------------------------------
                                                                                  

consensus_6894#0      AAATCATTGTGAAAAGAAATAAGTCTAT 1528
consensus_6894#1      ----------------------------
                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)