These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1528 fasta sequence [AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAACGGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATATACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAAGAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAACGTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTGCCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTGGCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCACCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGTCCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCTCGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGTCTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAGGGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTACAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGGCCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATACTGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCTATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGGTCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAGAAATCATTGTGAAAAGAAATAAGTCTAT] [+] EMBL AK070670 [AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAACGGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATATACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAAGAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAACGTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTGCCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTGGCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCACCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGTCCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCTCGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGTCTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAGGGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTACAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGGCCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATACTGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCTATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGGTCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAGAAATCATTGTGAAAAGAAATAAGTCTAT] [+] EMBL OSR24121A [ GGAAAAGAAAAAAGAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAACGTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGA CTGCTCCGCCGTCGTGCCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTGGCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCACCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGTCCCCA ] [+] EMBL AU032462 [ AAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCTCGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGTCTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCCGGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAGGGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAGGGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTACAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGGCCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATACTGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCTATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTaaaaaaaaa ] consensusID : consensus_6894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [CCGCTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCAC] [+] EMBL OSS10523A [CCGCTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGTCGTCTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTCGGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCCGAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGGAGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGGCCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6894#0 AGAGAGGTGAAAACTGGAGAGAAACTCCCAAGCAACTCCCAAAGTCTCAATCTGCTCAAC 60 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 GGACATGTTCCAATGATTCACTTGTTCGTTATTAATTGTTACATTTTCTTTGTTTATATA 120 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 TACGCACATGTAAGGATGCAGGAAGACGATCGATCAAGGTTCACCTCGGAAAAGAAAAAA 180 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 GAACAGAAAGAAAGACGATCTAGAGGGAGCCAAAGATTGCAAGATCGATCGCAAGGTAAC 240 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 GTACACGTACAGGTGAGAGGAATCGATGCCGGCCGACGCGCGAGCTGCTCCGCCGTCGTG 300 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 CCCGTTCCCGACGATACGGTCGCATGGCGCCGCCGTGGCGAGGTCGCACGCCTACGACTG 360 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 GCTCGCGCTGCTCCTCCTCGTCGCCGTCGACGGCCTCCTCAACGCCATCGAGCCGTTCCA 420 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 CCGGTTCGTCGGCGCCGGCATGATGACCGATCTCAGATACCCCATGAAGCGCAACACCGT 480 consensus_6894#1 --------------------------------------------------------CCG- 3 *** consensus_6894#0 CCCCATCTGGGCCGTCCCGATCGTCGCTGTCATTGGGCCCATGATTGTCTTCGCCGTCGT 540 consensus_6894#1 CTCGTCCTAAATGGCGCAGATCGTCGCTGTCATTGGGNCCATGATTGTNTTCACCGTCGT 63 * * ** * * ******************* ********** *** ******* consensus_6894#0 CTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTC 600 consensus_6894#1 CTACTTCAGGAGGAGGAACGTGTACGATCTTCACCATGCTGTGCTAGGCATTCTGTTTTC 123 ************************************************************ consensus_6894#0 GGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCC 660 consensus_6894#1 GGTGCTGATTACCGGCGTGCTCACCGACGCGATCAAGGATGCCGTCGGCCGCCCGAGGCC 183 ************************************************************ consensus_6894#0 GAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGG 720 consensus_6894#1 GAACTTCTTCTGGCGCTGCTTCCCCGACGGAATCGCGGTGTTCGATAACGTCACCACGGG 243 ************************************************************ consensus_6894#0 AGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGG 780 consensus_6894#1 AGTCATCTGCCACGGCGACGCGAGCGTGATCAAGGAGGGACACAAGAGCTTCCCGAGCGG 303 ************************************************************ consensus_6894#0 CCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGAT 840 consensus_6894#1 CCACACTTCATGGTCTTTCGCCGGTCTGGGGTTCCTGTCGTGGTACCTTGCCGGGAAGAT 363 ************************************************************ consensus_6894#0 CACGGTGTTCGACCGGCGCGGGCACGTCGCCAAGCTGTGCGTCGTCCTCGCGCCTCTGCT 900 consensus_6894#1 CAC--------------------------------------------------------- 366 *** consensus_6894#0 CGTTGCGGCGATGGTCGCCATCTCGAGGGTGGACGACTACTGGCACCATTGGCAAGACGT 960 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 CTGCACGGGAGGCGTCCTTGGATTGGTGGTTGCCTCTGTCTGCTATCTTCAGTTCTTCCC 1020 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 GGCTCCTTCAGATGAGAAAGGGTTCTGGCCTCACGCGCACTTTAGGTACATCACCGAGAG 1080 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 GGGAAGCGAGAACCCAACGCAGCAAGCCACCGAACCACTGGACGCCATGGAAACCGGTAG 1140 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 GGGAGGCCAATGAACAAGGTGCAAGCAAGACCAATCTTGTGTATATAAGGCCATAATGTA 1200 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 CAGCTCCTCCTCAAGGCACGGGAGGTAATCGTCGTTAGTTTGTAAATACTTTGGCGTGGG 1260 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 CCAATGGTACCGACTAACTTGACTACTGACCTGACGCAAATAGGTGTTGTTTGTACATAC 1320 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 TGTATGTATTTTCAACGAAGTTTGTACATATGTATTGGTTTTGCTTACTTATGTACTCCT 1380 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 ATGTATTTTAAATAATTTTAGTGTCTAAAATTCCGTTCTTCTCCCAAGAATGGCACGGGG 1440 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 TCAGATCAAGCTCTGTGTTAAGGCCTGAACTGGCCCATCCTATTTGGGCTTGAATTCAAG 1500 consensus_6894#1 ------------------------------------------------------------ consensus_6894#0 AAATCATTGTGAAAAGAAATAAGTCTAT 1528 consensus_6894#1 ---------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||