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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_69#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2083 fasta sequence
[CCTTTACCCTTCCCCTGGCTCCTCCTCCTGCAATTCCACTTCCATCCGTCGGCACAGGAGGAAGGTTGCTAAGGGGGGATCGGCTCCATTCCTCATTCTTCATTCCATTTGCGCGCGTGATTCGGGTTTCTTTTCCTTCTTGTCACCTGTTTCTTGGTCGGTTTCCCGCCTTCTCAGAGGTCGGTCGATTGGATTTGGAGCCCGGGGCCCAGCCTTGCCTCAACGTCTGTGTTGTCGTGTTCTTATTGGATTCTTGACCGGATTGGATTTTGGCGGTTCCAATTTTTGTTGGTTTGCTCCGATTCTTGGTTGATTTGGTCGGAAGATGATCAAGTGGGGCATCGGTAGCAGCGGGACGCCGGCGGATTCGTATTATGAGGTCCGCTCGGATTGCACGGATGACGTGCCCAAGAGCAAGTTCAAGATCAAGGCAGGAAAAACATTGAGTGTCCGGAAATGGCAGGCTGCATTTGGCACTGATGGTTGTCTTGATATTGCCTCAGTCCTAAGCCGGATACAAAAAGGAGGTGTGCATCCAACAGTAAGGGGAGAGGTTTGGGAGTTTTTACTTGGATGTTTTGATCCCAGGAGTACCTTTGATGAGAGGGAGGAAATCAGGCAAATAAGAAGGCTACAATATGCTAGATGGAAGGAAGACTGCCGAGAGATGGATTCTCATGTTGGTAGCGGGAAAGTGATCACAGCACCATTAATCACTGAGGATGGTAGACCCATCAAAGACCCTTTGGTTTTACTCGAGGCTACTTCATCCGAAAACACATCAGACGGTACTTCAACAAGCAGCACAAATGGAAATGAAATAGATGAATCTGCAAGCCGTATTACAGATAAGCTCATTATTGACTGGAAGCTTACTTTGCATCAAATTGGACTTGATGTGCTACGTACGGACCGCACTATGGTATTTTATGAGAACAAAGAAAATCTTTCCAAGTTGTGGGATATTCTAGCTGTGTATGCTTGGATTGATAAAGATGTTGGTTACTGTCAAGGAATGAGCGATTTATGCTCGCCAATGATCGTGCTACTCAAGGATGAAGCAGATGCCTTTTGGTGCTTTGAGAAATTGATGCGTAGATTGAGAGGAAATTCCAAATGCACGGATCAATCTGTGGGTGTGGCTAATCAACTTCAGTACCTTGCATCTATTATTCAGGTGCTTGATCCAAAGCTACATGACCACCTAGAAATACTTGGTGGAGGTGATTATCTTTTTGCATTTCGTATGTTCATGGTGCTATTTCGACGCGAAGTGTCATTTGGGGACTCCCTGTATCTCTGGGAGATGATGTGGGCTCTGGAATATGATCCCGACATCTTCTTTGCCGCTTGTGAAGATGCAAGTGCTCACAAAAGTAAAGTATCTAAATCAAAATTGAGAGGGGTACGCCATTTTGGCAAGTGGGACAAAGACAAAGATAAAGAGAATTCGAAAAATGGATCTGAGGATACTGATGGTCCAGTTCCAATTTCAGTTTTCATGGTTGCAAGTGTTCTCAAGGAAAAAAGAGAAAAGCTATTACAGGAAGCTAGAGGACTGGATGATCTTATTAGGATTCTGAATGATGTAAATGGAAATTTAGATGCCAAAAAAGCTTGTGCTGGTGCTTTGAAGCTTCATAAGAAATACCTGAAAAAAGTACAGACAAAGAAACCCTAAACTGTAACATATCTTCTCACTGGGTGATTCTTTTCCATGTGGACATAGCAAACTATACTTGACAGAATGCTCGCCATCTAAAATCGGCCTGGAATATACTGGTTTGTGAAGTTACCAGCTAGTCGGTCTGAGTACAGGAAGAATGCGACCCTTGTATGTAAAGATCTCGAATTCTTTCTACTCCATAATTTTGCTGCTTGTAAAGACAGAAGGTGGTGTGGGTAGCATGCCTCTGATACACAACAATTTCAATACAAGTTGAAATGAGCTGTTTGTGGTCTGTGTGAATACTGTAGCCACACACAGCTCTGTTTTGAGAACATTTTTACCCTTTAGCTGGAGATATGAAAGACATCACAATTTTGAATTTATTCCGAATTGGAAGTGCCAAAAGAAGGTTGA]
[+] EMBL AK121393 [CCTTTACCCTTCCCCTGGCTCCTCCTCCTGCAATTCCACTTCCATCCGTCGGCACAGGAGGAAGGTTGCTAAGGGGGGATCGGCTCCATTCCTCATTCTTCATTCCATTTGCGCGCGTGATTCGGGTTTCTTTTCCTTCTTGTCACCTGTTTCTTGGTCGGTTTCCCGCCTTCTCAGAGGTCGGTCGATTGGATTTGGAGCCCGGGGCCCAGCCTTGCCTCAACGTCTGTGTTGTCGTGTTCTTATTGGATTCTTGACCGGATTGGATTTTGGCGGTTCCAATTTTTGTTGGTTTGCTCCGATTCTTGGTTGATTTGGTCGGAAGATGATCAAGTGGGGCATCGGTAGCAGCGGGACGCCGGCGGATTCGTATTATGAGGTCCGCTCGGATTGCACGGATGACGTGCCCAAGAGCAAGTTCAAGATCAAGGCAGGAAAAACATTGAGTGTCCGGAAATGGCAGGCTGCATTTGGCACTGATGGTTGTCTTGATATTGCCTCAGTCCTAAGCCGGATACAAAAAGGAGGTGTGCATCCAACAGTAAGGGGAGAGGTTTGGGAGTTTTTACTTGGATGTTTTGATCCCAGGAGTACCTTTGATGAGAGGGAGGAAATCAGGCAAATAAGAAGGCTACAATATGCTAGATGGAAGGAAGACTGCCGAGAGATGGATTCTCATGTTGGTAGCGGGAAAGTGATCACAGCACCATTAATCACTGAGGATGGTAGACCCATCAAAGACCCTTTGGTTTTACTCGAGGCTACTTCATCCGAAAACACATCAGACGGTACTTCAACAAGCAGCACAAATGGAAATGAAATAGATGAATCTGCAAGCCGTATTACAGATAAGCTCATTATTGACTGGAAGCTTACTTTGCATCAAATTGGACTTGATGTGCTACGTACGGACCGCACTATGGTATTTTATGAGAACAAAGAAAATCTTTCCAAGTTGTGGGATATTCTAGCTGTGTATGCTTGGATTGATAAAGATGTTGGTTACTGTCAAGGAATGAGCGATTTATGCTCGCCAATGATCGTGCTACTCAAGGATGAAGCAGATGCCTTTTGGTGCTTTGAGAAATTGATGCGTAGATTGAGAGGAAATTCCAAATGCACGGATCAATCTGTGGGTGTGGCTAATCAACTTCAGTACCTTGCATCTATTATTCAGGTGCTTGATCCAAAGCTACATGACCACCTAGAAATACTTGGTGGAGGTGATTATCTTTTTGCATTTCGTATGTTCATGGTGCTATTTCGACGCGAAGTGTCATTTGGGGACTCCCTGTATCTCTGGGAGATGATGTGGGCTCTGGAATATGATCCCGACATCTTCTTTGCCGCTTGTGAAGATGCAAGTGCTCACAAAAGTAAAGTATCTAAATCAAAATTGAGAGGGGTACGCCATTTTGGCAAGTGGGACAAAGACAAAGATAAAGAGAATTCGAAAAATGGATCTGAGGATACTGATGGTCCAGTTCCAATTTCAGTTTTCATGGTTGCAAGTGTTCTCAAGGAAAAAAGAGAAAAGCTATTACAGGAAGCTAGAGGACTGGATGATCTTATTAGGATTCTGAATGATGTAAATGGAAATTTAGATGCCAAAAAAGCTTGTGCTGGTGCTTTGAAGCTTCATAAGAAATACCTGAAAAAAGTACAGACAAAGAAACCCTAAACTGTAACATATCTTCTCACTGGGTGATTCTTTTCCATGTGGACATAGCAAACTATACTTGACAGAATGCTCGCCATCTAAAATCGGCCTGGAATATACTGGTTTGTGAAGTTACCAGCTAGTCGGTCTGAGTACAGGAAGAATGCGACCCTTGTATGTAAAGATCTCGAATTCTTTCTACTCCATAATTTTGCTGCTTGTAAAGACAGAAGGTGGTGTGGGTAGCATGCCTCTGATACACAACAATTTCAATACAAGTTGAAATGAGCTGTTTGTGGTCTGTGTGAATACTGTAGCCACACACAGCTCTGTTTTGAGAACATTTTTACCCTTTAGCTGGAGATATGAAAGACATCACAATTTTGAATTTATTCCGAATTGGAAGTGCCAAAAGAAGGTTGA]
consensusID : consensus_69#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[GTGCTCCCAAAAGTAAGGTATCTAAATCAAAATTGAGAGGGGTACGCCATTTTGGCCAGGGGNCAAAGCCAAAGATAAAGAGAATTCGAAAAATGGATCTGAGGATACTGATGGTCCAGTTCCAATTTCAGTTTTCATGGTTGCAAGTGTTCTCAAGGAAAAAAGAGAAAAGCTATTACAGGAAGCTAGAGGACTGGATGATCTTATTAGGATTCTGAATGATGTAAATGGAAATTTAGATGCCAAAAAAGCTTGTGCTGGTGCTTTGAAGCTTCATAAGAAATACCTGAAAAAAGTGCAGACAAAGAAACCCTAAACTGTAACATATCTTCTCACTGGGTGATTCTTTTCCATGTGGACATAGCCAACTATACTTGGCAGAATGCTCGCCATCTAAAATCGGCCTGGTTTGTGAAGTTACCAGCTTGTCGGTTTGAGTACAGGAAGAATGCGACCCTTGTATGTAAAGATCTCGAATTCTTTCTACTCCATAATTTTGCTGCTTGTAAAGACAGAAGGTGGTGTGGGTAGCATGCCTTTGATACACAACAATTTCAATACAAGTTGAAATGAGCTGTTTGTGGTCTGTGTGAATACGGTAGCCACACACAGCTCTGTTTTGAGAACATTTTTACCCTTTAGCTGGAGATATGAAAGACATCCCAATTTTGAATTTAAAAAAAAAAAAAAAAA]
[-] EMBL CA762444 [GTGCTCCCAAAAGTAAGGTATCTAAATCAAAATTGAGAGGGGTACGCCATTTTGGCCAGGGGNCAAAGCCAAAGATAAAGAGAATTCGAAAAATGGATCTGAGGATACTGATGGTCCAGTTCCAATTTCAGTTTTCATGGTTGCAAGTGTTCTCAAGGAAAAAAGAGAAAAGCTATTACAGGAAGCTAGAGGACTGGATGATCTTATTAGGATTCTGAATGATGTAAATGGAAATTTAGATGCCAAAAAAGCTTGTGCTGGTGCTTTGAAGCTTCATAAGAAATACCTGAAAAAAGTGCAGACAAAGAAACCCTAAACTGTAACATATCTTCTCACTGGGTGATTCTTTTCCATGTGGACATAGCCAACTATACTTGGCAGAATGCTCGCCATCTAAAATCGGCCTGGTTTGTGAAGTTACCAGCTTGTCGGTTTGAGTACAGGAAGAATGCGACCCTTGTATGTAAAGATCTCGAATTCTTTCTACTCCATAATTTTGCTGCTTGTAAAGACAGAAGGTGGTGTGGGTAGCATGCCTTTGATACACAACAATTTCAATACAAGTTGAAATGAGCTGTTTGTGGTCTGTGTGAATACGGTAGCCACACACAGCTCTGTTTTGAGAACATTTTTACCCTTTAGCTGGAGATATGAAAGACATCCCAATTTTGAATTTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_69#0 CCTTTACCCTTCCCCTGGCTCCTCCTCCTGCAATTCCACTTCCATCCGTCGGCACAGGAG 60
consensus_69#1 ------------------------------------------------------------
consensus_69#0 GAAGGTTGCTAAGGGGGGATCGGCTCCATTCCTCATTCTTCATTCCATTTGCGCGCGTGA 120
consensus_69#1 ------------------------------------------------------------
consensus_69#0 TTCGGGTTTCTTTTCCTTCTTGTCACCTGTTTCTTGGTCGGTTTCCCGCCTTCTCAGAGG 180
consensus_69#1 ------------------------------------------------------------
consensus_69#0 TCGGTCGATTGGATTTGGAGCCCGGGGCCCAGCCTTGCCTCAACGTCTGTGTTGTCGTGT 240
consensus_69#1 ------------------------------------------------------------
consensus_69#0 TCTTATTGGATTCTTGACCGGATTGGATTTTGGCGGTTCCAATTTTTGTTGGTTTGCTCC 300
consensus_69#1 ------------------------------------------------------------
consensus_69#0 GATTCTTGGTTGATTTGGTCGGAAGATGATCAAGTGGGGCATCGGTAGCAGCGGGACGCC 360
consensus_69#1 ------------------------------------------------------------
consensus_69#0 GGCGGATTCGTATTATGAGGTCCGCTCGGATTGCACGGATGACGTGCCCAAGAGCAAGTT 420
consensus_69#1 ------------------------------------------------------------
consensus_69#0 CAAGATCAAGGCAGGAAAAACATTGAGTGTCCGGAAATGGCAGGCTGCATTTGGCACTGA 480
consensus_69#1 ------------------------------------------------------------
consensus_69#0 TGGTTGTCTTGATATTGCCTCAGTCCTAAGCCGGATACAAAAAGGAGGTGTGCATCCAAC 540
consensus_69#1 ------------------------------------------------------------
consensus_69#0 AGTAAGGGGAGAGGTTTGGGAGTTTTTACTTGGATGTTTTGATCCCAGGAGTACCTTTGA 600
consensus_69#1 ------------------------------------------------------------
consensus_69#0 TGAGAGGGAGGAAATCAGGCAAATAAGAAGGCTACAATATGCTAGATGGAAGGAAGACTG 660
consensus_69#1 ------------------------------------------------------------
consensus_69#0 CCGAGAGATGGATTCTCATGTTGGTAGCGGGAAAGTGATCACAGCACCATTAATCACTGA 720
consensus_69#1 ------------------------------------------------------------
consensus_69#0 GGATGGTAGACCCATCAAAGACCCTTTGGTTTTACTCGAGGCTACTTCATCCGAAAACAC 780
consensus_69#1 ------------------------------------------------------------
consensus_69#0 ATCAGACGGTACTTCAACAAGCAGCACAAATGGAAATGAAATAGATGAATCTGCAAGCCG 840
consensus_69#1 ------------------------------------------------------------
consensus_69#0 TATTACAGATAAGCTCATTATTGACTGGAAGCTTACTTTGCATCAAATTGGACTTGATGT 900
consensus_69#1 ------------------------------------------------------------
consensus_69#0 GCTACGTACGGACCGCACTATGGTATTTTATGAGAACAAAGAAAATCTTTCCAAGTTGTG 960
consensus_69#1 ------------------------------------------------------------
consensus_69#0 GGATATTCTAGCTGTGTATGCTTGGATTGATAAAGATGTTGGTTACTGTCAAGGAATGAG 1020
consensus_69#1 ------------------------------------------------------------
consensus_69#0 CGATTTATGCTCGCCAATGATCGTGCTACTCAAGGATGAAGCAGATGCCTTTTGGTGCTT 1080
consensus_69#1 ------------------------------------------------------------
consensus_69#0 TGAGAAATTGATGCGTAGATTGAGAGGAAATTCCAAATGCACGGATCAATCTGTGGGTGT 1140
consensus_69#1 ------------------------------------------------------------
consensus_69#0 GGCTAATCAACTTCAGTACCTTGCATCTATTATTCAGGTGCTTGATCCAAAGCTACATGA 1200
consensus_69#1 ------------------------------------------------------------
consensus_69#0 CCACCTAGAAATACTTGGTGGAGGTGATTATCTTTTTGCATTTCGTATGTTCATGGTGCT 1260
consensus_69#1 ------------------------------------------------------------
consensus_69#0 ATTTCGACGCGAAGTGTCATTTGGGGACTCCCTGTATCTCTGGGAGATGATGTGGGCTCT 1320
consensus_69#1 ------------------------------------------------------------
consensus_69#0 GGAATATGATCCCGACATCTTCTTTGCCGCTTGTGAAGATGCAAGTGCTCACAAAAGTAA 1380
consensus_69#1 --------------------------------------------GTGCTCCCAAAAGTAA 16
****** *********
consensus_69#0 AGTATCTAAATCAAAATTGAGAGGGGTACGCCATTTTGGCAAGTGGGACAAAGACAAAGA 1440
consensus_69#1 GGTATCTAAATCAAAATTGAGAGGGGTACGCCATTTTGGCCAG-GGGNCAAAGCCAAAGA 75
*************************************** ** *** ***** ******
consensus_69#0 TAAAGAGAATTCGAAAAATGGATCTGAGGATACTGATGGTCCAGTTCCAATTTCAGTTTT 1500
consensus_69#1 TAAAGAGAATTCGAAAAATGGATCTGAGGATACTGATGGTCCAGTTCCAATTTCAGTTTT 135
************************************************************
consensus_69#0 CATGGTTGCAAGTGTTCTCAAGGAAAAAAGAGAAAAGCTATTACAGGAAGCTAGAGGACT 1560
consensus_69#1 CATGGTTGCAAGTGTTCTCAAGGAAAAAAGAGAAAAGCTATTACAGGAAGCTAGAGGACT 195
************************************************************
consensus_69#0 GGATGATCTTATTAGGATTCTGAATGATGTAAATGGAAATTTAGATGCCAAAAAAGCTTG 1620
consensus_69#1 GGATGATCTTATTAGGATTCTGAATGATGTAAATGGAAATTTAGATGCCAAAAAAGCTTG 255
************************************************************
consensus_69#0 TGCTGGTGCTTTGAAGCTTCATAAGAAATACCTGAAAAAAGTACAGACAAAGAAACCCTA 1680
consensus_69#1 TGCTGGTGCTTTGAAGCTTCATAAGAAATACCTGAAAAAAGTGCAGACAAAGAAACCCTA 315
****************************************** *****************
consensus_69#0 AACTGTAACATATCTTCTCACTGGGTGATTCTTTTCCATGTGGACATAGCAAACTATACT 1740
consensus_69#1 AACTGTAACATATCTTCTCACTGGGTGATTCTTTTCCATGTGGACATAGCCAACTATACT 375
************************************************** *********
consensus_69#0 TGACAGAATGCTCGCCATCTAAAATCGGCCTGGAATATACTGGTTTGTGAAGTTACCAGC 1800
consensus_69#1 TGGCAGAATGCTCGCCATCTAAAATCGGCCTGG----------TTTGTGAAGTTACCAGC 425
** ****************************** *****************
consensus_69#0 TAGTCGGTCTGAGTACAGGAAGAATGCGACCCTTGTATGTAAAGATCTCGAATTCTTTCT 1860
consensus_69#1 TTGTCGGTTTGAGTACAGGAAGAATGCGACCCTTGTATGTAAAGATCTCGAATTCTTTCT 485
* ****** ***************************************************
consensus_69#0 ACTCCATAATTTTGCTGCTTGTAAAGACAGAAGGTGGTGTGGGTAGCATGCCTCTGATAC 1920
consensus_69#1 ACTCCATAATTTTGCTGCTTGTAAAGACAGAAGGTGGTGTGGGTAGCATGCCTTTGATAC 545
***************************************************** ******
consensus_69#0 ACAACAATTTCAATACAAGTTGAAATGAGCTGTTTGTGGTCTGTGTGAATACTGTAGCCA 1980
consensus_69#1 ACAACAATTTCAATACAAGTTGAAATGAGCTGTTTGTGGTCTGTGTGAATACGGTAGCCA 605
**************************************************** *******
consensus_69#0 CACACAGCTCTGTTTTGAGAACATTTTTACCCTTTAGCTGGAGATATGAAAGACATCACA 2040
consensus_69#1 CACACAGCTCTGTTTTGAGAACATTTTTACCCTTTAGCTGGAGATATGAAAGACATCCCA 665
********************************************************* **
consensus_69#0 ATTTTGAATTTATTCCGAATTGGAAGTGCCAAAAGAAGGTTGA 2083
consensus_69#1 ATTTTGAATTTAAAAAAAAAAAAAAAAA--------------- 693
************ ** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||