These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACTATTCTTGGGGAACCCATATATGATGCCTGATTTGAAATCAAAGGGGGATCGACCAATCGAGAAAAAATTCGCTACAAATCTCCCCTCAGATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTATGCCTGCCGGTGGGGCATATCACAAAGGGTTTAGGGACAGGAATGTTTTCATGGGTGGCCCATCGATCGATGATCATCATCAGATCATCACCCTTTCCAAAAAACGTTGGATCCCCACTTGGACTACTCCTTCAATCCATGTCAGGGGCCAAGGGCGAAT] [+] EMBL CF311587 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACTATTCTTGGGGAACCCATATATGATGCCTGATTTGAAATCAAAGGGGGATCGACCAATCGAGAAAAAATTCGCTACAAATCTCCCCTCAGATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTATGCCTGCCGGTGGGGCATATCACAAAGGGTTTAGGGACAGGAATGTTTTCATGGGTGGCCCATCGATCGATGATCATCATCAGATCATCACCCTTTCCAAAAAACGTTGGATCCCCACTTGGACTACTCCTTCAATCCATGTCAGGGGCCAAGGGCGAAT] consensusID : consensus_690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 291 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAACCCCCAATCGAGAAAAAATTCCCTTCAAATTTCCCCTCCAATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTTTGCCTGCCGGTGGGGCATATTACAAAGGGTTTTGGGACCGGAATGTTTTTATGGGTGGCCCATCGATCGATGATCATTATTAAATCATCGCCCTTTCCAAAAAAAGTTGGATCCCCCCTTGGACTACTCCTTTAATCCCTGGCAGGGGCC] [+] EMBL CF338084 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAACCCCCAATCGAGAAAAAATTCCCTTCAAATTTCCCCTCCAATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTTTGCCTGCCGGTGGGGCATATTACAAAGGGTTTTGGGACCGGAATGTTTTTATGGGTGGCCCATCGATCGATGATCATTATTAAATCATCGCCCTTTCCAAAAAAAGTTGGATCCCCCCTTGGACTACTCCTTTAATCCCTGGCAGGGGCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_690#0 ---TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAACTATTCTTGGGGA 57 consensus_690#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGA 60 **************************************** * ** ** **** consensus_690#0 ACCCATATATGATGCCTGATTTGAAATCAAAGGGGGATCGACCAATCGAGAAAAAATTCG 117 consensus_690#1 ACCC-------------------------------------CCAATCGAGAAAAAATTCC 83 **** ****************** consensus_690#0 CTACAAATCTCCCCTCAGATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTATG 177 consensus_690#1 CTTCAAATTTCCCCTCCAATGATACCAATACCCCGGGGGCCCCACAAGCGGTCAATTTTG 143 ** ***** ******* *************************************** ** consensus_690#0 CCTGCCGGTGGGGCATATCACAAAGGGTTTAGGGACAGGAATGTTTTCATGGGTGGCCCA 237 consensus_690#1 CCTGCCGGTGGGGCATATTACAAAGGGTTTTGGGACCGGAATGTTTTTATGGGTGGCCCA 203 ****************** *********** ***** ********** ************ consensus_690#0 TCGATCGATGATCATCATCAGATCATCACCCTTTCCAAAAAACGTTGGATCCCCACTTGG 297 consensus_690#1 TCGATCGATGATCATTATTAAATCATCGCCCTTTCCAAAAAAAGTTGGATCCCCCCTTGG 263 *************** ** * ****** ************** *********** ***** consensus_690#0 ACTACTCCTTCAATCCATGTCAGGGGCCAAGGGCGAAT 335 consensus_690#1 ACTACTCCTTTAATCCCTGGCAGGGGCC---------- 291 ********** ***** ** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||