These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6907#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1504 fasta sequence [GGGGCTATGACAATGGAAATTACGTGCCATGGACACCAGATGCGGATTGGAACAAGATATACCAGATAACCAGAATGAAACACAACGGACACCATCAGAATGGATGGAGGAAACATTAATCAATATGTTCTTGTCGGGCTATTCTAATGCAGAGGTCAATGCTGATATTTCACTTGGAGACTCACAAATAAATGACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGCCTCGGAAAATGCACCATCCTCTCCATGTGATGCTTCCTTGCACCAAACAGAAGATGAATTGCAAAATGAGAATTCGACAGCCGTGCATGAATCTCTGAGTGAAGAGGAAGAGAAATGGCTTGCTCAGTATGGTCAGGTAGAGCAAGAAATTGATGATCAACCATTATTTCCAAGCATCGATCTCTGGGATTGGGATATGGTCAAAGAATCAGTTAGTAAAGGTCAACCCATGGCCAGGCTTGTGGGACGTTTAGTTAAGGGTTCTAGTAAGCCTCATCCTTCTCTGCCTGCTCGTGGTGGCCTTCTAAGAACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGGAAAAATATAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTCCATCATCATATGACTCGTCCAACCCAACAAAAGACTGGGGGTTTTCCCAACATATATGCCAATTCTGACAATGATTTGGATAAACAGTCATCAGCACAGTGCCAATCGGAAGTCATGGGATGTATTTTCTATGAAAGGGNGNTTCAGCTTGCTAGTGCCAAGGAGCACAAGATAAATGCTTATAGGGACAGAGCTGCTGAGAGAAGGATCCTACACCGTGGTATAGGGATAGGACCTGGACAGAAACAAAGTAGCAGCACCAATTTTTATGAACATGAGGAAACAAGTGAGGGCATGGATCTGATGGGAGGTGCATCAGTAGATATGAACTTCCGTTCCAGTGGCTTGAATTCTGCCAAGAAAATGATGGAGAACATGGGCTGGAAGGAAGGCGAAGCCCTTGGGAAGAGCACAAAGGGTATGGTAGAACCCATACAGCCTACTGTCAACAAACATGGTGCTGGTTTGGGGTGGAAGCAAACCCGCTAAGATGTTTGTAATCGCTGAACTTTGGTGATTTCAGGTATGAATTCTTCTACAAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGATGCTGAAACTGCTGATTGTGAGCAAGTAAGGTATATATACTCTAGACTGATTGAAGATGATGAGATCACAAGGAAAAGAGAGAGGACGAAGGAACCTGCGGAATTGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATAGTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTAGGCCCCTTTT] [+] EMBL CA766815 [GGGGCTATGACAATGGAAATTACGTGCCATGGACACCAGATGCGGATTGGAACAAGATATACCAGATAACCAGAATGAAACACAACGGACACCATCAGAATGGATGGAGGAAACATTAATCAATATGTTCTTGTCGGGCTATTCTAATGCAGAGGTCAATGCTGATATTTCACTTGGAGACTCACAAATAAATGACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGCCTCGGAAAATGCACCATCCTCTCCATGTGATGCTTCCTTGCACCAAACAGAAGATGAATTGCAAAATGAGAATTCGACAGCCGTGCATGAATCTCTGAGTGAAGAGGAAGAGAAATGGCTTGCTCAGTATGGTCAGGTAGAGCAAGAAATTGATGATCAACCATTATTTCCAAGCATCGATCTCTGGGATTGGGATATGGTCAAAGAATCAGTTAGTAAAGGTCAACCCATGGCCAGGCTTGTGGGACGTTTAGTTAAGGGTTCTAGTAAGCCTCATCCTTCTCTGCCTGCTCGTGGTGGCCTTCTAAGAACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGGAAAAATATAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTCCATCATCATATGACTCGTCCAACCCAACAAAAGACTGGGGGTTTTCCCAACATATATGCCAATTCTGACAATGATTTGGATAAACAGTCATCAGCACAGTGCCAATCGGAAGTCATGGGATGTATTTTCTATGAAAGGGNGNTTCAGCTTGCTAGT ] [-] EMBL CB623276 [ CAATTCTGACAATGATTTGGATAAACAGTCATCAGCACAGTGCCAATCGGAAGTCAT GGATGTATTTTCTATG AAGGGTGTTTCAGC TGCTAGTGCCAAGGAGCACAAGATAAATGCTTATAGGGACAGAGCTGCTGAGAGAAGGATCCTACACCGTGGTATAGGGATAGGACCTGGACAGAAACAAAGTAGCAGCACCAATTTTTATGAACATGAGGAAACAAGTGAGGGCATGGATCTGATGGGAGGTGCATCAGTAGATATGAACTTCCGTTCCAGTGGCTTGAATTCTGCCAAGAAAATGATGGAGAACATGGGCTGGAAGGAAGGCGAAGCCCTTGGGAAGAGCACAAAGGGTATGGTAGAACCCATACAGCCTACTGTCAACAAACATGGTGCTGGTTTGGGGTGGAAGCAAACCCGCTAAGATGTTTGTAATCGCTGAACTTTGGTGATTTCAGGTATGAATTCTTCTACAAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGATGCTGAAACTGCTGATTGTGAGCAAGTAAGGTATATATACTCTAGACTGATTGAAGATGATGAGATCACAAGGAAAAGAGAGAGGACGAAGGAACCTGCGGAATTGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATAGTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTAGGCCCCTTTT] [-] EMBL CB623277 [ TTATAGGGACAGAGCTGCTGAGAGAAGGATCCTACACCGTGGTATAGGGATAGGACCTGGACAGAAACAAAGTAGCAGCACCAATTTTTATGAACATGAGGAAACAAGTGAGGGCATGGATCTGATGGGAGGTGCATCAGTAGATATGAACTTCCGTTCCAGTGGCTTGAATTCTGCCAAGAAAATGATGGAGAACATGGGCTGGAAGGAAGGCGAAGCCCTTGGGAAGAGCACAAAGGGTATGGTAGAACCCATACAGCCTACTGTCAACAAACATGGTGCTGGTTTGGGGTGGAAGCAAACCCGCTAAGATGTTTGTAATCGCTGAACTTTGGTGATTTCAGGTATGAATTCTTCTACAAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACAGGCAGTAAAGATGCTGAAACTGCTGATTGTGAGCAAGTAAGGTATATATACTCTAGACTGATTGAAGATGATGAGATCACAAGGAAAAGAGAGAGGACGAAGGAACCTGCGGAATTGCGGAAATCTGGTATCTGAAGAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAATTTAAGGTCGTGCGTTGCATGTATNAAT ] consensusID : consensus_6907#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [TTTTTGGGGTGGAACAACCCGCCTAAGATGTTTGTAATCGCTGAACTTTGGTTGATTTCAGGTATGAATTCTTCTACACAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACACGGCAGTAAAGGAACCTGCGGAATTGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTTTTCCCCTTTTGAGACTCTAATTCACAAGCTCCGTTAATGTTGGAACCTATTTGACACATGCTCATCCTTTATTATATGGTGCAGTCTATGGATCCTTTCTAAAGAAAGTGAATACCGAATGGATTTTCTCTGAACAAAAATCATAAATGTACTCCGATTAAAAAAAAA] [+] EMBL BI808778 [TTTTTGGGGTGGAACAACCCGCCTAAGATGTTTGTAATCGCTGAACTTTGGTTGATTTCAGGTATGAATTCTTCTACACAAAGAAATGATGTAACTGAGACTGTTCATCTCAGAAATTCGGCACCCTTCTTGGAGGACGCTGTGTTTAGTACTACACGGCAGTAAAGGAACCTGCGGAATTGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTTTCTGTTCACCCTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTTTTCCCCTTTTGAGACTCTAATTCACAAGCTCCGTTAATGTTGGAACCTATTTGACACATGCTCATCCTTTATTATATGGTGCAGTCTATGGATCCTTTCTAAAGAAAGTGAATACCGAATGGATTTTCTCTGAACAAAAATCATAAATGTACTCCGATTAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6907#0 GGGGCTATGACAATGGAAATTACGTGCCATGGACACCAGATGCGGATTGGAACAAGATAT 60 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 ACCAGATAACCAGAATGAAACACAACGGACACCATCAGAATGGATGGAGGAAACATTAAT 120 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 CAATATGTTCTTGTCGGGCTATTCTAATGCAGAGGTCAATGCTGATATTTCACTTGGAGA 180 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 CTCACAAATAAATGACGGAGATAGTAGTGAGACAGCTGAAAATAAACCTGGTAACTTCGC 240 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 CTCGGAAAATGCACCATCCTCTCCATGTGATGCTTCCTTGCACCAAACAGAAGATGAATT 300 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 GCAAAATGAGAATTCGACAGCCGTGCATGAATCTCTGAGTGAAGAGGAAGAGAAATGGCT 360 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 TGCTCAGTATGGTCAGGTAGAGCAAGAAATTGATGATCAACCATTATTTCCAAGCATCGA 420 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 TCTCTGGGATTGGGATATGGTCAAAGAATCAGTTAGTAAAGGTCAACCCATGGCCAGGCT 480 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 TGTGGGACGTTTAGTTAAGGGTTCTAGTAAGCCTCATCCTTCTCTGCCTGCTCGTGGTGG 540 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 CCTTCTAAGAACTGCCCCTGTGCATGAAGTTCATCTTGATCTTGTGCGTGTTTCATCAGG 600 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 AAAAATATAGGCTAAGGAACCCTAGCAGGAAATACTTAGCCTCTCCATCATCATATGACT 660 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 CGTCCAACCCAACAAAAGACTGGGGGTTTTCCCAACATATATGCCAATTCTGACAATGAT 720 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 TTGGATAAACAGTCATCAGCACAGTGCCAATCGGAAGTCATGGGATGTATTTTCTATGAA 780 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 AGGGNGNTTCAGCTTGCTAGTGCCAAGGAGCACAAGATAAATGCTTATAGGGACAGAGCT 840 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 GCTGAGAGAAGGATCCTACACCGTGGTATAGGGATAGGACCTGGACAGAAACAAAGTAGC 900 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 AGCACCAATTTTTATGAACATGAGGAAACAAGTGAGGGCATGGATCTGATGGGAGGTGCA 960 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 TCAGTAGATATGAACTTCCGTTCCAGTGGCTTGAATTCTGCCAAGAAAATGATGGAGAAC 1020 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 ATGGGCTGGAAGGAAGGCGAAGCCCTTGGGAAGAGCACAAAGGGTATGGTAGAACCCATA 1080 consensus_6907#1 ------------------------------------------------------------ consensus_6907#0 CAGCCTACTGTCAACAAACATGGTGCTGGTTTGGGGTGGAAGCAAACCCGCTAAGATGTT 1140 consensus_6907#1 ---------------------------TTTTTGGGGTGGAA-CAACCCGCCTAAGATGTT 32 ************ *** ** ********** consensus_6907#0 TGTAATCGCTGAACTTTGGT-GATTTCAGGTATGAATTCTTCTACA-AAAGAAATGATGT 1198 consensus_6907#1 TGTAATCGCTGAACTTTGGTTGATTTCAGGTATGAATTCTTCTACACAAAGAAATGATGT 92 ******************** ************************* ************* consensus_6907#0 AACTGAGACTGTTCATCTCAGAAATTCG-CACCCTTCTTGGAGGACGCTGTGTTTAGTAC 1257 consensus_6907#1 AACTGAGACTGTTCATCTCAGAAATTCGGCACCCTTCTTGGAGGACGCTGTGTTTAGTAC 152 **************************** ******************************* consensus_6907#0 TACA-GGCAGTAAAGATGCTGAAACTGCTGATTGTGAGCAAGTAAGGTATATATACTCTA 1316 consensus_6907#1 TACACGGCAGTAAAG-----GAACCTGCGGAAT-TGCGGAAATCTGGTA-----ACTGAA 201 **** ********** *** **** ** * ** * ** * **** *** * consensus_6907#0 GACTGATTGAAGATGATGAGATCACAAGGAAAAGAGAGAGGACGAAGGAACCTGCGGAAT 1376 consensus_6907#1 GAGCGGGAGAAGATTGTGAATATTCCTGACGGAAGTAATTGACTTAGTT-TCTGTTCACC 260 ** * ****** *** * * * * *** ** *** * consensus_6907#0 TGCGGAAATCTGGTAACTGAAGAGCGGGAGAAGATTGTGAATAGTCCTGACGG---AAGT 1433 consensus_6907#1 CTTTCAAGTTATTATCCTGCGTTGCATGTATAAATCTTTTCCCCTTTTGAGACTCTAATT 320 ** * *** ** * * ** * * *** ** * consensus_6907#0 AATTGACTTAGTTTCTGTTC--ACCCTTTCAAGTTAT---TATCCTGCGTTGCATGTATA 1488 consensus_6907#1 CACAAGCTCCGTTAATGTTGGAACCTATTTGACACATGCTCATCCTTTATTATATGGTGC 380 * ** *** **** *** ** * ** ***** ** *** consensus_6907#0 AATCTA-GGCCCCTTTT------------------------------------------- 1504 consensus_6907#1 AGTCTATGGATCCTTTCTAAAGAAAGTGAATACCGAATGGATTTTCTCTGAACAAAAATC 440 * **** ** ***** consensus_6907#0 -------------------------- consensus_6907#1 ATAAATGTACTCCGATTAAAAAAAAA 466 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||