These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6908#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1292 fasta sequence [AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAAGCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACGGCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGCCGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCGGGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACCGCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCATCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGTTTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAGCTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTTCTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATGAGAAAAGA-GCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCT-GACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAAATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGATAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCATCTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGCAGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCCATCGGAACATTGCAGGGATCAAA] [+] EMBL CB676735 [AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAAGCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACGGCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGCCGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCGGGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACCGCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCATCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGTTTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAGCTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTTCTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATGAGAAAAGA GCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCT GACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAAATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGT ] [-] EMBL CB676736 [ GCAAATGAGAAAAGAGGTTGGATTTTGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCTGGAGTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAAGTTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGATAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCATCTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGCAGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCCATCGGAACATTGCAGGGATCAAA] consensusID : consensus_6908#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 466 fasta sequence [ACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCNATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACCCTTACTNGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAANATAGCCTTTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN] [+] EMBL AU092143 [ACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCNATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACCCTTACTNGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAANATAGCCTTTGTTCTGTAAAAAAAAAAAAAA ] [-] EMBL OSC109851 [ GGCTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCCATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAACATAGCCTTTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6908#0 AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAA 60 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 GCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACG 120 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 GCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGC 180 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 CGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCG 240 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 GGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACC 300 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 GCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCA 360 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 TCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGT 420 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 TTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAG 480 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 CTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTT 540 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 CTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATG 600 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 AGAAAAGAGCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTG 660 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 CAACAATGCTGACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATA 720 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 AATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGA 780 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 TAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTT 840 consensus_6908#1 ------------------------------------ACCGCCTGGCTTTCTTTGTATTTT 24 ************************ consensus_6908#0 GGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGT 900 consensus_6908#1 GGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGT 84 ***************** ****************************************** consensus_6908#0 GGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCAT 960 consensus_6908#1 GGCNATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTA----------- 133 *** ********************************************* consensus_6908#0 CTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGC 1020 consensus_6908#1 ------------------------------------------------------------ consensus_6908#0 AGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTC 1080 consensus_6908#1 -----CCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTC 188 ******************************************************* consensus_6908#0 AAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATC 1140 consensus_6908#1 AAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATC 248 ************************************************************ consensus_6908#0 CTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAG 1200 consensus_6908#1 CTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACCCTTACTNG 308 ************************************** ******************* * consensus_6908#0 TACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTT 1260 consensus_6908#1 TACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTT 368 ************************************************************ consensus_6908#0 ATGAAGCCCATCGGAACATTGCAGGGATCAAA---------------------------- 1292 consensus_6908#1 ATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAANATAGCCT 428 ******** ********* *** ******* consensus_6908#0 -------------------------------------- consensus_6908#1 TTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN 466 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||