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Oryza sativa
cluster # 6908 cluster # 6908       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6908#0 length = 1292 sequences # 2  
consensus_6908#1 length = 466 sequences # 2  

consensusID : consensus_6908#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1292
fasta sequence
                              [AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAAGCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACGGCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGCCGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCGGGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACCGCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCATCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGTTTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAGCTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTTCTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATGAGAAAAGA-GCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCT-GACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAAATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGATAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCATCTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGCAGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCCATCGGAACATTGCAGGGATCAAA]

[+] EMBL CB676735             [AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAAGCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACGGCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGCCGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCGGGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACCGCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCATCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGTTTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAGCTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTTCTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATGAGAAAAGA GCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCT GACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAAATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB676736             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCAAATGAGAAAAGAGGTTGGATTTTGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTGCAACAATGCTGGAGTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATAAGTTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGATAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCATCTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGCAGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCCATCGGAACATTGCAGGGATCAAA]


>consensus_6908#0 AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAA GCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACG GCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGC CGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCG GGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACC GCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCA TCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGT TTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAG CTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTT CTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATG AGAAAAGAGCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTG CAACAATGCTGACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATA AATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGA TAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTT GGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGT GGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCAT CTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGC AGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTC AAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATC CTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAG TACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTT ATGAAGCCCATCGGAACATTGCAGGGATCAAA



consensusID : consensus_6908#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 466
fasta sequence
                              [ACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCNATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACCCTTACTNGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAANATAGCCTTTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN]

[+] EMBL AU092143             [ACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGTGGCNATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACCCTTACTNGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAANATAGCCTTTGTTCTGTAAAAAAAAAAAAAA               ]
[-] EMBL OSC109851            [                                                                                                                      GGCTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTTATGAAGCCCATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAACATAGCCTTTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN]


>consensus_6908#1 ACCGCCTGGCTTTCTTTGTATTTTGGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTC ATGCTTGTGGAGCTATATCCTGGTGGCNATACCCATTTCTTGACCTTTCATCGTCAGGGG CTCCTCTATGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGT CGATTGTCAAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAA ATTAGATCCTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACC CTTACTNGTACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGG GCTGAGTTATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAA NATAGCCTTTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6908#0      AACTACCCCAAAATTCCCCCGCGCCGCACCTCCATTGCCGCTACGCGACGCGAGGCTCAA 60
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      GCAAAGGTCAACCGCGCGTCGCCGGGGGGGTGATGTCGTCGTCGGCGGCGGCGGAGGACG 120
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      GCGAGGCGGCGTACTGGCTGCGGTGGCAGGTGTTCGTCTGCGGCGCCCTCATCGTGCTGC 180
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      CGACGGCCGCCGCGGCGGCGCTGCTCCCGCGGCTGCGCAGGGCGGCCGCGCCCCTCCGCG 240
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      GGACCGACCTGTGGGTCCCCTGCTGGGCGCGTCTCCACCCCGGCTGGCTCCTCGGCTACC 300
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      GCGCCTTCGCCCTCGCCGCCGCCGTCGCCCTCCTCGTCCGCCTCCTCGTCGGCCATGGCA 360
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      TCGACGTCTTCTTCTTCTACACCCAGTGGACCTTTTTATTAGTCACCATATATTTTGCGT 420
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      TTGCAACTGCTATATCAGCTCACGGATGTTGGGTTTACTCAAAGAAAAACTTGAAGAAAG 480
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      CTGATGAATCCCATGAATTTCTTAGTGACGATGTGGAAAATCGTGAGTTTTCCACTTCTT 540
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      CTGGCGAGATGAAAAGGGATGAGGAGAAGATAACAAACTATCATGAACAAATAGCAAATG 600
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      AGAAAAGAGCTGGATTATGGGGACGTTGCATGCAAATCATTTACCAGACTAGTGCAGGTG 660
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      CAACAATGCTGACTGATATCACATTTTGGGGACTACTTGTGCCATTCTTTTACCGTGATA 720
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      AATTTGGACTTTCCTTGATCACTGATGGCATGCATTCTCTTAATGCTGTTCTTTTACTGA 780
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      TAGACACATTTCTCAACAATATGCCCTTCCCCTGGTACCGCCTGGCTTTCTTTGTATTTT 840
consensus_6908#1      ------------------------------------ACCGCCTGGCTTTCTTTGTATTTT 24
                                                          ************************

consensus_6908#0      GGAGCTGCTCCTATGTAACCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGT 900
consensus_6908#1      GGAGCTGCTCCTATGTACCCTTCCAATGGGTCCTTCATGCTTGTGGAGCTATATCCTGGT 84
                      ***************** ******************************************

consensus_6908#0      GGCCATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTATGTTTTCTCAT 960
consensus_6908#1      GGCNATACCCATTTCTTGACCTTTCATCGTCAGGGGCTCCTCTATGGTA----------- 133
                      *** *********************************************           

consensus_6908#0      CTGTTCATCCATACCATCCATGGAACTTTGCTGTCCTGACAACACCATTAATTTTTCTGC 1020
consensus_6908#1      ------------------------------------------------------------
                                                                                  

consensus_6908#0      AGGTACCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTC 1080
consensus_6908#1      -----CCTCGCCATGGCCATTGTTCATATCCCTTGCTTCTTTCTGTATTGGTCGATTGTC 188
                           *******************************************************

consensus_6908#0      AAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATC 1140
consensus_6908#1      AAGGCAAAGCAAACTTACTTCCCCAGATTGTTTCCACATGCTTATGTGAGAAATTAGATC 248
                      ************************************************************

consensus_6908#0      CTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCCATTTATATATACCCTTACTAG 1200
consensus_6908#1      CTAACTCATACGTGCAAACTGTATGAATAAGTGCATGCNATTTATATATACCCTTACTNG 308
                      ************************************** ******************* *

consensus_6908#0      TACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTT 1260
consensus_6908#1      TACGAAATGTCTTCATGTATAGTCTGATAGATTAGCGATCCCTGGAAATTGGGCTGAGTT 368
                      ************************************************************

consensus_6908#0      ATGAAGCCCATCGGAACATTGCAGGGATCAAA---------------------------- 1292
consensus_6908#1      ATGAAGCCNATCGGAACAATGCTTCGATCAAATGAAATACGAAGAGCTTTAANATAGCCT 428
                      ******** ********* ***   *******                            

consensus_6908#0      --------------------------------------
consensus_6908#1      TTGTTCTGTAAAAAAAAAAAAAAAAAAAAAAAAGGGCN 466
                                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)