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Oryza sativa
cluster # 6918 cluster # 6918       Sequences # 4       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6918#0 length = 1605 sequences # 4  

consensusID : consensus_6918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1605
fasta sequence
                              [GCTCCCTCCTTCCTCCCATCTCCTCCTCTCCTCTCCTCTCCTCTCCTCCGCTCTCGCGAAGCTCCCAAGTTTGACTCCCTCGAGACCCACCACCACCACCACGCCGCGAGCACGCGAGCGAACGCGCGGCGGCGGGGGGGATGGGAGGGGTGACGTCGAGCGTGGCGGCGAAGATGGCCTTCTTCCCGCCGACGCCGCCGTCGTACGCGCTGGTGGACGACCCGGCCGCCGGGGTGACCACCATGACGGGGCAACCCCACAGGGAGAACGTCGAGGTGCTCCGCCTCCGGACGCGGCGGGGGAACACCGTGGCGGCGGTGTACGTCCGCCACCCGGACGCCGCCACCACGCTGCTCTACTCCCACGGCAACGCCGCCGACCTGGGCCACCTCTACCAGCTCTTCCTCCACCTCTCCTTCAACCTCCGCGTTAACGTCCTCGGATATGACTATTCAGGATATGGACAATCATCAGGAAAGCCAAGTGAACACAACACTTATGCTGATATAGAGGCTGCTTACAAATGCCTCATTGAGAACTTTGGTGCCAAGGAAGAAGAAATAATTCTTTATGGACAATCTGTTGGAAGTGGACCCACAGTAGATTTGGCTAGTCGATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGTCAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGAATATCGATAAAATCCCTCAGGTCACCTGCCCTGTGCTCATTATACATGGAACTGCTGATGAAGTAGTTGATTGGTCTCATGGTAAGCAACTATGGGAGCTTTGCAAAGAGAAATATGAGCCTTTATGGCTCAAGGGAGGGAAGCACTGTGACTTGGAGCTCTTCCCAGAATATCTTCGGCATCTCAAGAAGTTTGTCAACACAGTAGAGAAGTCACCATCCCCAAGGAATGCCTGGAGGGAAAGTTTGGACCGGATTGAACCCTCTCGGAAAAGTGTCGATTGCTTTGAACCCTCGAGGAGAAGTGTTGATTTCTTTGAACCCTCGCGGAAGAGCACAGACCGAAGGGAGAAATCAAGGCCAACCCGTGATAGGATGAGAGGTGTTGAACACAGATATAGCAATGTTGAGAAGACGGACAAATTAAAGTTCTCATTCGACCATATGGAGAAATCGAGGAGAAGCATTGACATCTTTGAGAGGCCAAAGAAGAACATTGAACAGCTCGACTGTGGAAGGAAGAGCGTGGATAGATTGGACCGGATTTGGGCCAGTTAAAAACTTTTTTAACATCTTATACAAGGTATACATGGGGCTTGGTTGTTTTGGGGGGGTTTTACTTGTGTATTTATTTGTATTCACCCATGTGCTGGAAGGTGTGGCATAAGAGTTGGTTCGCCGAATCTAAAGGAGAGAAGAAGAAGAGCTAGCTAATTGCTG-ACAATGTTGTTTGTCTCTGTTTAGAACTTGTACTGGTTTGTGTGGTGGAAGAAGTGTATGTTGGTCCTCAGCAAATGGTTGTTCTGTTAGGGTTGTTAAAAAGTTGGGACTAGTCCATGGATGGCAGCATTGTGTATAAATTTACTATCTGTTGCTCTGCCAAAAAAAA]

[+] EMBL AK071123             [GCTCCCTCCTTCCTCCCATCTCCTCCTCTCCTCTCCTCTCCTCTCCTCCGCTCTCGCGAAGCTCCCAAGTTTGACTCCCTCGAGACCCACCACCACCACCACGCCGCGAGCACGCGAGCGAACGCGCGGCGGCGGGGGGGATGGGAGGGGTGACGTCGAGCGTGGCGGCGAAGATGGCCTTCTTCCCGCCGACGCCGCCGTCGTACGCGCTGGTGGACGACCCGGCCGCCGGGGTGACCACCATGACGGGGCAACCCCACAGGGAGAACGTCGAGGTGCTCCGCCTCCGGACGCGGCGGGGGAACACCGTGGCGGCGGTGTACGTCCGCCACCCGGACGCCGCCACCACGCTGCTCTACTCCCACGGCAACGCCGCCGACCTGGGCCACCTCTACCAGCTCTTCCTCCACCTCTCCTTCAACCTCCGCGTTAACGTCCTCGGATATGACTATTCAGGATATGGACAATCATCAGGAAAGCCAAGTGAACACAACACTTATGCTGATATAGAGGCTGCTTACAAATGCCTCATTGAGAACTTTGGTGCCAAGGAAGAAGAAATAATTCTTTATGGACAATCTGTTGGAAGTGGACCCACAGTAGATTTGGCTAGTCGATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGTCAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGAATATCGATAAAATCCCTCAGGTCACCTGCCCTGTGCTCATTATACATGGAACTGCTGATGAAGTAGTTGATTGGTCTCATGGTAAGCAACTATGGGAGCTTTGCAAAGAGAAATATGAGCCTTTATGGCTCAAGGGAGGGAAGCACTGTGACTTGGAGCTCTTCCCAGAATATCTTCGGCATCTCAAGAAGTTTGTCAACACAGTAGAGAAGTCACCATCCCCAAGGAATGCCTGGAGGGAAAGTTTGGACCGGATTGAACCCTCTCGGAAAAGTGTCGATTGCTTTGAACCCTCGAGGAGAAGTGTTGATTTCTTTGAACCCTCGCGGAAGAGCACAGACCGAAGGGAGAAATCAAGGCCAACCCGTGATAGGATGAGAGGTGTTGAACACAGATATAGCAATGTTGAGAAGACGGACAAATTAAAGTTCTCATTCGACCATATGGAGAAATCGAGGAGAAGCATTGACATCTTTGAGAGGCCAAAGAAGAACATTGAACAGCTCGACTGTGGAAGGAAGAGCGTGGATAGATTGGACCGGATTTGGGCCAGTTAAAAACTTTTTTAACATCTTATACAAGGTATACATGGGGCTTGGTTGTTTTGGGGGGGTTTTACTTGTGTATTTATTTGTATTCACCCATGTGCTGGAAGGTGTGGCATAAGAGTTGGTTCGCCGAATCTAAAGGAGAGAAGAAGAAGAGCTAGCTAATTGCTG ACAATGTTGTTTGTCTCTGTTTAGAACTTGTACTGGTTTGTGTGGTGGAAGAAGTGTATGTTGGTCCTCAGCAAATGGTTGTTCTGTTAGGGTTGTTAAAAAGTTGGGACTAGTCCATGGATGGCAGCATTGTGTATAAATTTACTATCT                   ]
[-] EMBL AU078007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGACTGTGGAAGGAAGAGCGTGGATAGATTGGACCGGATTTGGGCCAGTTAAAAACTTTTTTAACATCTTATACAAGGTATACATGGGGCTTGGTTGTTTTGGGGGGGTTTTACTTGTGTATTTATTTGTATTCACCCATGTGCTGGAAGGTGTGGCATAAGAGTTGGTTCGCCGAATCTAAAGGAGAGAAGAAGAAGAGCTAGCTAATTGCTGCACAATGTTGTTTGTCTCTGTTTAGAACTTGTACTGGTTTGTGTGGTGGAAGAAGTGTATGTTGGTCCTCAGCAAATGGTTGTTCTGTTAGGGTTGTTAAAAAGTTGGGACTAGTCCATGGAa                                               ]
[+] EMBL AU165147             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTGTGGAAGGAAGAGCGTGGATAGATTGGACCGGATTTGGGCCAGTTAAAAACTTTTTTAACATCTTATACAAGGTATACATGGGGCTTGGTTGTTTTGGGGGGGTTTTACTTGTGTATTTATTTGTATTCACCCATGTGCTGGAAGGTGTGGCATAAGAGTTGGTTCGCCGAATCTAAAGGAGAGAAGAAGAAGAGCTAGCTAATTGCTG ACAATGTTGTTTGTCTCTGTTTAGAACTCGTACTGGTTTGTGTGGTGGAAGAAGTGTATGTTGGTCCTCAGCAAATGGTTGTTCTGTTAGGGTTGTTAAAAAGTTGGGACTAGTCCATGGATGGCAGCATTGTGTATAAATTTACTATCTGTTGCTCTGCCAAAAA   ]
[+] EMBL CA754410             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATGTTGGTCCTCAGCAAATGGTTGTTCTGTTAGGGTTGTTAAAAAGTTGGGACTAGTCCATGGATGGCAGCATTGTGTATAAATTTACTATCTGTTGCTCTAAAAAAAAAAA]


>consensus_6918#0 GCTCCCTCCTTCCTCCCATCTCCTCCTCTCCTCTCCTCTCCTCTCCTCCGCTCTCGCGAA GCTCCCAAGTTTGACTCCCTCGAGACCCACCACCACCACCACGCCGCGAGCACGCGAGCG AACGCGCGGCGGCGGGGGGGATGGGAGGGGTGACGTCGAGCGTGGCGGCGAAGATGGCCT TCTTCCCGCCGACGCCGCCGTCGTACGCGCTGGTGGACGACCCGGCCGCCGGGGTGACCA CCATGACGGGGCAACCCCACAGGGAGAACGTCGAGGTGCTCCGCCTCCGGACGCGGCGGG GGAACACCGTGGCGGCGGTGTACGTCCGCCACCCGGACGCCGCCACCACGCTGCTCTACT CCCACGGCAACGCCGCCGACCTGGGCCACCTCTACCAGCTCTTCCTCCACCTCTCCTTCA ACCTCCGCGTTAACGTCCTCGGATATGACTATTCAGGATATGGACAATCATCAGGAAAGC CAAGTGAACACAACACTTATGCTGATATAGAGGCTGCTTACAAATGCCTCATTGAGAACT TTGGTGCCAAGGAAGAAGAAATAATTCTTTATGGACAATCTGTTGGAAGTGGACCCACAG TAGATTTGGCTAGTCGATTGCATCGGCTTCGAGCTGTTGTCTTGCACAGTCCTATACTGT CAGGATTGAGAGTTATGTATCCTGTGAAGCGTACATACTGGTTTGACATATATAAGAATA TCGATAAAATCCCTCAGGTCACCTGCCCTGTGCTCATTATACATGGAACTGCTGATGAAG TAGTTGATTGGTCTCATGGTAAGCAACTATGGGAGCTTTGCAAAGAGAAATATGAGCCTT TATGGCTCAAGGGAGGGAAGCACTGTGACTTGGAGCTCTTCCCAGAATATCTTCGGCATC TCAAGAAGTTTGTCAACACAGTAGAGAAGTCACCATCCCCAAGGAATGCCTGGAGGGAAA GTTTGGACCGGATTGAACCCTCTCGGAAAAGTGTCGATTGCTTTGAACCCTCGAGGAGAA GTGTTGATTTCTTTGAACCCTCGCGGAAGAGCACAGACCGAAGGGAGAAATCAAGGCCAA CCCGTGATAGGATGAGAGGTGTTGAACACAGATATAGCAATGTTGAGAAGACGGACAAAT TAAAGTTCTCATTCGACCATATGGAGAAATCGAGGAGAAGCATTGACATCTTTGAGAGGC CAAAGAAGAACATTGAACAGCTCGACTGTGGAAGGAAGAGCGTGGATAGATTGGACCGGA TTTGGGCCAGTTAAAAACTTTTTTAACATCTTATACAAGGTATACATGGGGCTTGGTTGT TTTGGGGGGGTTTTACTTGTGTATTTATTTGTATTCACCCATGTGCTGGAAGGTGTGGCA TAAGAGTTGGTTCGCCGAATCTAAAGGAGAGAAGAAGAAGAGCTAGCTAATTGCTGACAA TGTTGTTTGTCTCTGTTTAGAACTTGTACTGGTTTGTGTGGTGGAAGAAGTGTATGTTGG TCCTCAGCAAATGGTTGTTCTGTTAGGGTTGTTAAAAAGTTGGGACTAGTCCATGGATGG CAGCATTGTGTATAAATTTACTATCTGTTGCTCTGCCAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)