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Oryza sativa
cluster # 6919 cluster # 6919       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6919#0 length = 1264 sequences # 3  
consensus_6919#1 length = 351 sequences # 1  

consensusID : consensus_6919#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1264
fasta sequence
                              [TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAATCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAGGTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTCCCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCAGTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTTATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGATATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAGCGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACATGAGAATATAAGATAAGAAAAAGGTACCAGCTTGGC-ACTGCT-GTAAATGACTGGCAGTTGGAACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATT-TAACATCGACCCA-GGTGCCTGGAGATGGTCTTTTGAGGCTCATTTGACA-TTCTTTTTCTAACATACAT-TTCA-ATTCGATGGGGGTTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAGAACAAGTCTTTCTGACTTCCAGGTCTGCTGAGGTTTTACAAAGAAATGGTTTGCTCACGAATGACAAAAATTTTGGCATGTAGCATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAATTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAAGTTGATTGGTAAAAAAAAAA]

[+] EMBL AK108424             [TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAATCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAGGTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTCCCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCAGTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTTATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGATATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAGCGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACATGAGAATATAAGATAAGAAAAAGGTACCAGCTTGGC ACTGCT GTAAATGACTGGCAGTTGGAACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATT TAACATCGACCCA GGTGCCTGGAGATGGTCTTTTGAGGCTCATTTGACA TTCTTTTTCTAACATACAT TTCA ATTCGATGGGGGTTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAGAACAAGTCTTTCTGACTTCCAGGTCTGCTGAGGTTTTACAAAGAAATGGTTTGCTCACGAATGACAAAAATTTTGGCATGTAGCATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAATTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAA                    ]
[+] EMBL CA753185             [                                                                                                                                   ATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTCACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTCCCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTATCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAATTGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGGGCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTTGGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCAGTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTTATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGATATATTCCAGTCATCGATAGGCNCTATAATATCAACATAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BI812022             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               tATAT AGATAAGAAAAAGGTACCAGCTTGGCAACT CTGGTAAATGACT GCAGTTGGAACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATTGTAACATCGACCCACGGTGCCTGGAGAT GCCTTTTGAGGCTCATTTGACACTTCTTTTTCTAACAGACATGGTCAGATTCGATGGGGGTTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAG ACAAGTCTTTCTGACTTCCAGGTCTGCTGAGGTTTTACCAAGAAATGGTTTGCTCACGAATGACCAAAATTTTGGCATGTAGCATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAACTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAAGTTGATTGGTAAAAAAAAAA]


>consensus_6919#0 TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAA TCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAG GTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTC ACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTC CCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTA TCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAAT TGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGG GCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTT GGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCA GTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTT ATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGA TATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAG CGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACAT GAGAATATAAGATAAGAAAAAGGTACCAGCTTGGCACTGCTGTAAATGACTGGCAGTTGG AACCTGCGCCTTCAGAATTCTGTTTGAAGCATCATTTAACATCGACCCAGGTGCCTGGAG ATGGTCTTTTGAGGCTCATTTGACATTCTTTTTCTAACATACATTTCAATTCGATGGGGG TTCAGACTTCAGAGGCAACTGAATATTGGAAGTTAGAACAAGTCTTTCTGACTTCCAGGT CTGCTGAGGTTTTACAAAGAAATGGTTTGCTCACGAATGACAAAAATTTTGGCATGTAGC ATTTTGTCCTTTGTATTACTTGTCTTTTGTATAGTATTTTCTTCAGAAAAGAGACTTTAA AGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATTTATATACTCGAATTGCAGGCA ACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAATGAAAGTTGATTGGTAAAAAA AAAA



consensusID : consensus_6919#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence
                              [GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTGTAGATGCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCGATGGGGGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTCGGACTTCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACAAAAATTTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTTCTTCAAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA]

[+] EMBL BI808328             [GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTGTAGATGCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCGATGGGGGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTCGGACTTCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACAAAAATTTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTTCTTCAAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA]


>consensus_6919#1 GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTGTAGAT GCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCGATGGG GGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTCGGACT TCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACAAAAAT TTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTTCTTCA AGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6919#0      TGATGATGAAGAGGAAGCTAATATGGAAACAACATCATACGCTATTATTAAATTGAAGAA 60
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      TCATATGGCGCAGCAGCTCTTAGTTGTTCAGGGCATAGTTAAATTGTATGAGACACACAG 120
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      GTGGTCTTTTTATGCTGAGCATATGGGAATAATTTTAGAGACACTATCAGCCATTGCGTC 180
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      ACATGCAAGTGAAGTGAGCTCCGAATCTACCTTGCTCATGAAATTCCATAAAGCATGTTC 240
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      CCTTTTGGAGGTGTCTGAGCCAGCAGTCATTCATTTCGAGAATGAGTCTTACCAGAGCTA 300
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      TCTCAAACTTCTGCAAGCTTTGGTTCATGACCACCCATCAATCTCAGAAGATATGAAAAT 360
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      TGAGTCACATATTATGCTTGTTTCTGAGAAAATACTACGGAAGTATCTCAAATGTGCAGG 420
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      GCGTGAACGATCTAACGATTCATCTGGTAGAGATCCAGCATTACGCTGGAAACTGCCTTT 480
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      GGGCACTGCTAAGAAGGAGGAACTGTCTGCTAGAACTTCATTGGTCCTTCATGTGATGCA 540
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      GTTATTGGGTGGCCTAGAGAGGGACTGCTTTAGGAGAAACCTGCCCCTGTTTTTCCCCTT 600
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      ATTAACTAACCTCATTCGCTGTGAGCATAGCTCTGGAGAAGTTCAGCTTGCACTGTATGA 660
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      TATATTCCAGTCATCGATAGGCCCTATAATATCAACATAGTATATATATCATTTGTTCAG 720
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      CGGTTGTACAATTTTTCCATTCCAATTTCATAAGGTATAGCTTATTGATAGTGGTTACAT 780
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      GAGAATATAAGATAAGAAAAAGGTACCAGCTTGGCACTGCTGTAAATGACTGGCAGTTGG 840
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      AACCTGCGCCTT-CAGAATTCTGTTTG-AAGCATCATTTAACAT-CGACCCAGGTGCCTG 897
consensus_6919#1      -----GTGCCCTGCAGAATTCTGTGTGGAAGCATCATGTAACATGCGACCCAGGTCCCTG 55
                           * *** * *********** ** ********* ****** ********** ****

consensus_6919#0      GAGATGGTCTTTTGAGGCTCATTT-GACATTCTTTTTCT--AACAT-ACATTTCAATTCG 953
consensus_6919#1      TAGATGCCTTTTGGAGGCTCATTGAGACATTCTTGTTGCGAAACATGACATTGCAATTCG 115
                       *****   *** **********  ********* **    ***** ***** *******

consensus_6919#0      ATGGGGGTTCAGACTT-CAGAGGCAACT--GAATATTGGAAGTT-AGAACAAGTCTT-TC 1008
consensus_6919#1      ATGGGGGTTCAGACTTTCAGAGCCAAACTGGAATATGGGAAGTTGAGAACAAGTCTTGTC 175
                      **************** ***** ***    ****** ******* ************ **

consensus_6919#0      TGACTTCC-AGGTCTGCTGAGGTTTTAC-AAAGAAATGG-TTTGCT-CACGAATG--ACA 1062
consensus_6919#1      GGACTTCCCAGGTCTGCTGAGGTTTGACCAAAGAAATGGGTTTGCTGCACGAATGGAACA 235
                       ******* **************** ** ********** ****** ********  ***

consensus_6919#0      AAAATTTTGGCATGTAGCATTTT--GTCCTTTGTATTACTTGTCTTTTGTATAGTATTTT 1120
consensus_6919#1      AAAATTTTGGCATGTAGCACTTTTGGTCCTTTGTATTACTGGTCTTTTGTATAGTATTTT 295
                      ******************* ***  *************** *******************

consensus_6919#0      CTTCA-GAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTAAATT 1179
consensus_6919#1      CTTCAAGAAAAGAGACTTTAAAGTCGTCCATCAAGTTGTTCTTTTTTTCCGCTTTA---- 351
                      ***** **************************************************    

consensus_6919#0      TATATACTCGAATTGCAGGCAACATGTATTTGTCATTCTTAGTGGAAATGGATCAATAAA 1239
consensus_6919#1      ------------------------------------------------------------
                                                                                  

consensus_6919#0      TGAAAGTTGATTGGTAAAAAAAAAA 1264
consensus_6919#1      -------------------------
                                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)