These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1480 fasta sequence [GCAAGCGCAGAGGACAAGAGCGCCTCCTCGTCTGGTCTGCTTCGGCCCCCCGCTCGCTCCTCCTGCCGAAGCACTCACTCTTCGGCTGCTCATCCTCCTCCTCCTCCT------CAGAACCAGACTTGCCACGAAGGATTTGATAATCTAGGGGTTCGGGACGAGATGATATTTTCAGTCAGCTTATTTGGTAGTTCCCACCAGTCCATTCACAAACTTTACAGGAAATGCTGGTCAAGTAACTCACATTCTACACTGAATGTGCTTTCACTTGCAAAAACTGTGGGTCAAAGTATGAGAATGAAGAGGATACGTGTCAAGCCTCATGCCACTGACCTGAAGAATCGCCCCCAGGCCCATGAGGATAATGTGTTCTACAAATTGGTTTAT-AGGCTCCCTGAAAACCTCAGCTGGCTGTTGGCGTCACCAGAAATGGCT-AGAAGACCACCCTCAAAGAAGAAACTAAAGAAGGAAGAAATGGTAAGTAGTAATCAATTTGGTGTGATCTTGGAGTGGGAAGGAGTTGTTGTGGAAGATGATGATCCAGATTTGGAGCCTCGAGTTTGGTACGTGTTATCACTTGAAGAGGCAAAGTCTTTTCCTCCAGATGCAGTGCTGAAGGAAATTGAGGGGATGAGGACTGATCAGGCTATTTTAGAAGTCTTACATTGGTCAGAAGATCCACAAGAAGTACAAAGGCTGGCAGCACGCAAGGAGGTAATATATAAAACATTACGTGGTAGATTCTACCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACCCTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCTATAGTGGCAGCAGAGGATTTCTGCCGAGGGAAACCCGAGGGGGAGATGTTTGAGGTCACAGCAGGGCAACTTGGTCTTGAGCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACAATAGAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCGGTTGCAAGCCGATACCCTGCCTATGAGCTCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGGTAATGCATTACATTTTGTTAACAGATCAAGCTGATTAACATTGGCCGTTAGCTTGTTAACTGCTTGGTTTCTTGTAATGCAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTA] [+] EMBL AK067832 [GCAAGCGCAGAGGACAAGAGCGCCTCCTCGTCTGGTCTGCTTCGGCCCCCCGCTCGCTCCTCCTGCCGAAGCACTCACTCTTCGGCTGCTCATCCTCCTCCTCCTCCT CAGAACCAGACTTGCCACGAAGGATTTGATAATCTAGGGGTTCGGGACGAGATGATATTTTCAGTCAGCTTATTTGGTAGTTCCCACCAGTCCATTCACAAACTTTACAGGAAATGCTGGTCAAGTAACTCACATTCTACACTGAATGTGCTTTCACTTGCAAAAACTGTGGGTCAAAGTATGAGAATGAAGAGGATACGTGTCAAGCCTCATGCCACTGACCTGAAGAATCGCCCCCAGGCCCATGAGGATAATGTGTTCTACAAATTGGTTTAT AGGCTCCCTGAAAACCTCAGCTGGCTGTTGGCGTCACCAGAAATGGCT AGAAGACCACCCTCAAAGAAGAAACTAAAGAAGGAAGAAATGGTAAGTAGTAATCAATTTGGTGTGATCTTGGAGTGGGAAGGAGTTGTTGTGGAAGATGATGATCCAGATTTGGAGCCTCGAGTTTGGTACGTGTTATCACTTGAAGAGGCAAAGTCTTTTCCTCCAGATGCAGTGCTGAAGGAAATTGAGGGGATGAGGACTGATCAGGCTATTTTAGAAGTCTTACATTGGTCAGAAGATCCACAAGAAGTACAAAGGCTGGCAGCACGCAAGGAGGTAATATATAAAACATTACGTGGTAGATTCTACCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACCCTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCTATAGTGGCAGCAGAGGATTTCTGCCGAGGGAAACCCGAGGGGGAGATGTTTGAGGTCACAGCAGGGCAACTTGGTCTTGAGCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACAATAGAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCGGTTGCAAGCCGATACCCTGCCTATGAGCTCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGGTAATGCATTACATTTTGTTAACAGATCAAGCTGATTAACATTGGCCGTTAGCTTGTTAACTGCTTGGTTTCTTGTAATGCAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTA] [+] EMBL AU055704 [ GAGGACAAGAGCGCCTCCTCGTCTGGTCTGCTTCGGCCCCCCGCTCGCTCCTCCTGCCGAAGCACTCACTCTTCGGCTGCTCATCCTCCTCCTCCTCCTCAGGAGCAGAACCAGACTTGCCACGAAGGATTTGATAATCTAGGGGTTCGGGACGAGATGATATTTTCAGTCAGCTTATTTGGTAGTTCCCACCAGTCCATTCACAAACTTTACAGGAAATGCTGGTCAAGTAACTCACATTCTACACTGAATGTGCTTTCACTTGCAAAAACTGTGGGTCAAAGTATGAGAATGAAGAGGATACGTGTCAAGCCTCATGCCACTGACCTGAAGAATCGCCCCCAGGCCCATGAGGATAATGTGTTCTACAAATTGGGTTATAAGGCTCCCTGAAAACCTCAGCTGGCTGTTGGCGTCACCAG AATGGGTAAGAAGAC ] [-] EMBL CA759443 [ CAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCTATAGTGGCAGCAGAGGATTTCTGCCGAGGGAAACCCGAGGGGGAGATGTTTGAGGTCGCAGCAGGGCAACTTGGTCTTGAGCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACAATAAAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCGGTTGCAAGCCGATACCCTGCCTTTGAGCTCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGGTAATGCATTACATTTTGTTAACAGATCAAGCTGATTAACATTGGCCGTTAGCTTGTTAACTGCTTGGTTTCTTGTAATGCAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTT ] consensusID : consensus_6925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence [AAGGAGGTCATATATAAAACATTACGTGGTAGATTCTCCCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACCCTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCCTATAGTGGCNGCAGAGGATTTCTGCCCGAGGGAAACCCGAGGGGGAGATGTTTGNGGTCACAGCAGGGCAACTTGGTCTTGAGCCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACCAATAGAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCCGGTTGCAAGCCCGATACCCTGCCTATGAGCTCCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTAAAAA] [+] EMBL AU055705 [AAGGAGGTCATATATAAAACATTACGTGGTAGATTCTCCCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACCCTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCCTATAGTGGCNGCAGAGGATTTCTGCCCGAGGGAAACCCGAGGGGGAGATGTTTGNGGTCACAGCAGGGCAACTTGGTCTTGAGCCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACCAATAGAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCCGGTTGCAAGCCCGATACCCTGCCTATGAGCTCCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6925#0 GCAAGCGCAGAGGACAAGAGCGCCTCCTCGTCTGGTCTGCTTCGGCCCCCCGCTCGCTCC 60 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 TCCTGCCGAAGCACTCACTCTTCGGCTGCTCATCCTCCTCCTCCTCCTCAGAACCAGACT 120 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 TGCCACGAAGGATTTGATAATCTAGGGGTTCGGGACGAGATGATATTTTCAGTCAGCTTA 180 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 TTTGGTAGTTCCCACCAGTCCATTCACAAACTTTACAGGAAATGCTGGTCAAGTAACTCA 240 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 CATTCTACACTGAATGTGCTTTCACTTGCAAAAACTGTGGGTCAAAGTATGAGAATGAAG 300 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 AGGATACGTGTCAAGCCTCATGCCACTGACCTGAAGAATCGCCCCCAGGCCCATGAGGAT 360 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 AATGTGTTCTACAAATTGGTTTATAGGCTCCCTGAAAACCTCAGCTGGCTGTTGGCGTCA 420 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 CCAGAAATGGCTAGAAGACCACCCTCAAAGAAGAAACTAAAGAAGGAAGAAATGGTAAGT 480 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 AGTAATCAATTTGGTGTGATCTTGGAGTGGGAAGGAGTTGTTGTGGAAGATGATGATCCA 540 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 GATTTGGAGCCTCGAGTTTGGTACGTGTTATCACTTGAAGAGGCAAAGTCTTTTCCTCCA 600 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 GATGCAGTGCTGAAGGAAATTGAGGGGATGAGGACTGATCAGGCTATTTTAGAAGTCTTA 660 consensus_6925#1 ------------------------------------------------------------ consensus_6925#0 CATTGGTCAGAAGATCCACAAGAAGTACAAAGGCTGGCAGCACGCAAGGAGGTAATATAT 720 consensus_6925#1 ---------------------------------------------AAGGAGGTCATATAT 15 ******** ****** consensus_6925#0 AAAACATTACGTGGTAGATTCTACCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACC 780 consensus_6925#1 AAAACATTACGTGGTAGATTCTCCCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACC 75 ********************** ************************************* consensus_6925#0 CTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCC-TAGA 839 consensus_6925#1 CTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCCTAGA 135 ******************************************************* **** consensus_6925#0 AGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGC-TATAGTGGCAGCAGAGG 898 consensus_6925#1 AGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCCTATAGTGGCNGCAGAGG 195 ****************************************** ********* ******* consensus_6925#0 ATTTCTGCC-GAGGGAAACCCGAGGGGGAGATGTTTGAGGTCACAGCAGGGCAACTTGGT 957 consensus_6925#1 ATTTCTGCCCGAGGGAAACCCGAGGGGGAGATGTTTGNGGTCACAGCAGGGCAACTTGGT 255 ********* *************************** ********************** consensus_6925#0 CTTGAGCC-TGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGAC-AATAGAATCTGCGC 1015 consensus_6925#1 CTTGAGCCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACCAATAGAATCTGCGC 315 ******** ************************************ ************** consensus_6925#0 ATACTGCTGGGATGAGGTGTGTTGC-GGTTGCAAGCC-GATACCCTGCCTATGAGCTCC- 1072 consensus_6925#1 ATACTGCTGGGATGAGGTGTGTTGCCGGTTGCAAGCCCGATACCCTGCCTATGAGCTCCC 375 ************************* *********** ********************* consensus_6925#0 AAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGA 1132 consensus_6925#1 AAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGA 435 ************************************************************ consensus_6925#0 TTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGG 1192 consensus_6925#1 TTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGG 495 ************************************************************ consensus_6925#0 AGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTAT 1252 consensus_6925#1 AGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTAT 555 ************************************************************ consensus_6925#0 ATAGCTCCAATTGCAACCTAGGTAATGCATTACATTTTGTTAACAGATCAAGCTGATTAA 1312 consensus_6925#1 ATAGCTCCAATTGCAACCTAG--------------------------------------- 576 ********************* consensus_6925#0 CATTGGCCGTTAGCTTGTTAACTGCTTGGTTTCTTGTAATGCAGAAATGGAACTTTTGTA 1372 consensus_6925#1 --------------------------------------------AAATGGAACTTTTGTA 592 **************** consensus_6925#0 GCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATC 1432 consensus_6925#1 GCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATC 652 ************************************************************ consensus_6925#0 TCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTA---- 1480 consensus_6925#1 TCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTAAAAA 704 ************************************************ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||