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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6925#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1480 fasta sequence
[GCAAGCGCAGAGGACAAGAGCGCCTCCTCGTCTGGTCTGCTTCGGCCCCCCGCTCGCTCCTCCTGCCGAAGCACTCACTCTTCGGCTGCTCATCCTCCTCCTCCTCCT------CAGAACCAGACTTGCCACGAAGGATTTGATAATCTAGGGGTTCGGGACGAGATGATATTTTCAGTCAGCTTATTTGGTAGTTCCCACCAGTCCATTCACAAACTTTACAGGAAATGCTGGTCAAGTAACTCACATTCTACACTGAATGTGCTTTCACTTGCAAAAACTGTGGGTCAAAGTATGAGAATGAAGAGGATACGTGTCAAGCCTCATGCCACTGACCTGAAGAATCGCCCCCAGGCCCATGAGGATAATGTGTTCTACAAATTGGTTTAT-AGGCTCCCTGAAAACCTCAGCTGGCTGTTGGCGTCACCAGAAATGGCT-AGAAGACCACCCTCAAAGAAGAAACTAAAGAAGGAAGAAATGGTAAGTAGTAATCAATTTGGTGTGATCTTGGAGTGGGAAGGAGTTGTTGTGGAAGATGATGATCCAGATTTGGAGCCTCGAGTTTGGTACGTGTTATCACTTGAAGAGGCAAAGTCTTTTCCTCCAGATGCAGTGCTGAAGGAAATTGAGGGGATGAGGACTGATCAGGCTATTTTAGAAGTCTTACATTGGTCAGAAGATCCACAAGAAGTACAAAGGCTGGCAGCACGCAAGGAGGTAATATATAAAACATTACGTGGTAGATTCTACCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACCCTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCTATAGTGGCAGCAGAGGATTTCTGCCGAGGGAAACCCGAGGGGGAGATGTTTGAGGTCACAGCAGGGCAACTTGGTCTTGAGCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACAATAGAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCGGTTGCAAGCCGATACCCTGCCTATGAGCTCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGGTAATGCATTACATTTTGTTAACAGATCAAGCTGATTAACATTGGCCGTTAGCTTGTTAACTGCTTGGTTTCTTGTAATGCAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTA]
[+] EMBL AK067832 [GCAAGCGCAGAGGACAAGAGCGCCTCCTCGTCTGGTCTGCTTCGGCCCCCCGCTCGCTCCTCCTGCCGAAGCACTCACTCTTCGGCTGCTCATCCTCCTCCTCCTCCT CAGAACCAGACTTGCCACGAAGGATTTGATAATCTAGGGGTTCGGGACGAGATGATATTTTCAGTCAGCTTATTTGGTAGTTCCCACCAGTCCATTCACAAACTTTACAGGAAATGCTGGTCAAGTAACTCACATTCTACACTGAATGTGCTTTCACTTGCAAAAACTGTGGGTCAAAGTATGAGAATGAAGAGGATACGTGTCAAGCCTCATGCCACTGACCTGAAGAATCGCCCCCAGGCCCATGAGGATAATGTGTTCTACAAATTGGTTTAT AGGCTCCCTGAAAACCTCAGCTGGCTGTTGGCGTCACCAGAAATGGCT AGAAGACCACCCTCAAAGAAGAAACTAAAGAAGGAAGAAATGGTAAGTAGTAATCAATTTGGTGTGATCTTGGAGTGGGAAGGAGTTGTTGTGGAAGATGATGATCCAGATTTGGAGCCTCGAGTTTGGTACGTGTTATCACTTGAAGAGGCAAAGTCTTTTCCTCCAGATGCAGTGCTGAAGGAAATTGAGGGGATGAGGACTGATCAGGCTATTTTAGAAGTCTTACATTGGTCAGAAGATCCACAAGAAGTACAAAGGCTGGCAGCACGCAAGGAGGTAATATATAAAACATTACGTGGTAGATTCTACCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACCCTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCTATAGTGGCAGCAGAGGATTTCTGCCGAGGGAAACCCGAGGGGGAGATGTTTGAGGTCACAGCAGGGCAACTTGGTCTTGAGCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACAATAGAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCGGTTGCAAGCCGATACCCTGCCTATGAGCTCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGGTAATGCATTACATTTTGTTAACAGATCAAGCTGATTAACATTGGCCGTTAGCTTGTTAACTGCTTGGTTTCTTGTAATGCAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTA]
[+] EMBL AU055704 [ GAGGACAAGAGCGCCTCCTCGTCTGGTCTGCTTCGGCCCCCCGCTCGCTCCTCCTGCCGAAGCACTCACTCTTCGGCTGCTCATCCTCCTCCTCCTCCTCAGGAGCAGAACCAGACTTGCCACGAAGGATTTGATAATCTAGGGGTTCGGGACGAGATGATATTTTCAGTCAGCTTATTTGGTAGTTCCCACCAGTCCATTCACAAACTTTACAGGAAATGCTGGTCAAGTAACTCACATTCTACACTGAATGTGCTTTCACTTGCAAAAACTGTGGGTCAAAGTATGAGAATGAAGAGGATACGTGTCAAGCCTCATGCCACTGACCTGAAGAATCGCCCCCAGGCCCATGAGGATAATGTGTTCTACAAATTGGGTTATAAGGCTCCCTGAAAACCTCAGCTGGCTGTTGGCGTCACCAG AATGGGTAAGAAGAC ]
[-] EMBL CA759443 [ CAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCTATAGTGGCAGCAGAGGATTTCTGCCGAGGGAAACCCGAGGGGGAGATGTTTGAGGTCGCAGCAGGGCAACTTGGTCTTGAGCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACAATAAAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCGGTTGCAAGCCGATACCCTGCCTTTGAGCTCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGGTAATGCATTACATTTTGTTAACAGATCAAGCTGATTAACATTGGCCGTTAGCTTGTTAACTGCTTGGTTTCTTGTAATGCAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTT ]
consensusID : consensus_6925#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[AAGGAGGTCATATATAAAACATTACGTGGTAGATTCTCCCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACCCTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCCTATAGTGGCNGCAGAGGATTTCTGCCCGAGGGAAACCCGAGGGGGAGATGTTTGNGGTCACAGCAGGGCAACTTGGTCTTGAGCCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACCAATAGAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCCGGTTGCAAGCCCGATACCCTGCCTATGAGCTCCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTAAAAA]
[+] EMBL AU055705 [AAGGAGGTCATATATAAAACATTACGTGGTAGATTCTCCCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACCCTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCCTAGAAGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCCTATAGTGGCNGCAGAGGATTTCTGCCCGAGGGAAACCCGAGGGGGAGATGTTTGNGGTCACAGCAGGGCAACTTGGTCTTGAGCCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACCAATAGAATCTGCGCATACTGCTGGGATGAGGTGTGTTGCCGGTTGCAAGCCCGATACCCTGCCTATGAGCTCCCAAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGATTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGGAGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTATATAGCTCCAATTGCAACCTAGAAATGGAACTTTTGTAGCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATCTCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6925#0 GCAAGCGCAGAGGACAAGAGCGCCTCCTCGTCTGGTCTGCTTCGGCCCCCCGCTCGCTCC 60
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 TCCTGCCGAAGCACTCACTCTTCGGCTGCTCATCCTCCTCCTCCTCCTCAGAACCAGACT 120
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 TGCCACGAAGGATTTGATAATCTAGGGGTTCGGGACGAGATGATATTTTCAGTCAGCTTA 180
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 TTTGGTAGTTCCCACCAGTCCATTCACAAACTTTACAGGAAATGCTGGTCAAGTAACTCA 240
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 CATTCTACACTGAATGTGCTTTCACTTGCAAAAACTGTGGGTCAAAGTATGAGAATGAAG 300
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 AGGATACGTGTCAAGCCTCATGCCACTGACCTGAAGAATCGCCCCCAGGCCCATGAGGAT 360
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 AATGTGTTCTACAAATTGGTTTATAGGCTCCCTGAAAACCTCAGCTGGCTGTTGGCGTCA 420
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 CCAGAAATGGCTAGAAGACCACCCTCAAAGAAGAAACTAAAGAAGGAAGAAATGGTAAGT 480
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 AGTAATCAATTTGGTGTGATCTTGGAGTGGGAAGGAGTTGTTGTGGAAGATGATGATCCA 540
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 GATTTGGAGCCTCGAGTTTGGTACGTGTTATCACTTGAAGAGGCAAAGTCTTTTCCTCCA 600
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 GATGCAGTGCTGAAGGAAATTGAGGGGATGAGGACTGATCAGGCTATTTTAGAAGTCTTA 660
consensus_6925#1 ------------------------------------------------------------
consensus_6925#0 CATTGGTCAGAAGATCCACAAGAAGTACAAAGGCTGGCAGCACGCAAGGAGGTAATATAT 720
consensus_6925#1 ---------------------------------------------AAGGAGGTCATATAT 15
******** ******
consensus_6925#0 AAAACATTACGTGGTAGATTCTACCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACC 780
consensus_6925#1 AAAACATTACGTGGTAGATTCTCCCAACTGCGACCAGGTGTTCTTGATTTCCTGAACACC 75
********************** *************************************
consensus_6925#0 CTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCC-TAGA 839
consensus_6925#1 CTTGTGGATTTTGACATTCCAATAGCAATCACAACTCCTCGCCCACGGTTGAGCCCTAGA 135
******************************************************* ****
consensus_6925#0 AGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGC-TATAGTGGCAGCAGAGG 898
consensus_6925#1 AGAAGGGATAAAAGCTGTTGGTCTTCAAGGCTACTTTGATGCCTATAGTGGCNGCAGAGG 195
****************************************** ********* *******
consensus_6925#0 ATTTCTGCC-GAGGGAAACCCGAGGGGGAGATGTTTGAGGTCACAGCAGGGCAACTTGGT 957
consensus_6925#1 ATTTCTGCCCGAGGGAAACCCGAGGGGGAGATGTTTGNGGTCACAGCAGGGCAACTTGGT 255
********* *************************** **********************
consensus_6925#0 CTTGAGCC-TGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGAC-AATAGAATCTGCGC 1015
consensus_6925#1 CTTGAGCCCTGATGTTTGTCTTGTGCTGGGTAACTCAAATTCGACCAATAGAATCTGCGC 315
******** ************************************ **************
consensus_6925#0 ATACTGCTGGGATGAGGTGTGTTGC-GGTTGCAAGCC-GATACCCTGCCTATGAGCTCC- 1072
consensus_6925#1 ATACTGCTGGGATGAGGTGTGTTGCCGGTTGCAAGCCCGATACCCTGCCTATGAGCTCCC 375
************************* *********** *********************
consensus_6925#0 AAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGA 1132
consensus_6925#1 AAGCAGCAAACCATGTTGTAAGATGGCTTGATCAGCTATCTGTCGCTGACCTGCAAAGGA 435
************************************************************
consensus_6925#0 TTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGG 1192
consensus_6925#1 TTGCCAATGGCGAGATTCTTGGGCTCAGGGGCAGAAGATCTGACATGGACATGGACATGG 495
************************************************************
consensus_6925#0 AGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTAT 1252
consensus_6925#1 AGATTGTGATCGAGGAGTGATTTTTCTATATGTATGGTGTGCTAATATTGCCCTATGTAT 555
************************************************************
consensus_6925#0 ATAGCTCCAATTGCAACCTAGGTAATGCATTACATTTTGTTAACAGATCAAGCTGATTAA 1312
consensus_6925#1 ATAGCTCCAATTGCAACCTAG--------------------------------------- 576
*********************
consensus_6925#0 CATTGGCCGTTAGCTTGTTAACTGCTTGGTTTCTTGTAATGCAGAAATGGAACTTTTGTA 1372
consensus_6925#1 --------------------------------------------AAATGGAACTTTTGTA 592
****************
consensus_6925#0 GCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATC 1432
consensus_6925#1 GCCTAGATGCTTTCGATCTCTAGAAGAATTGGAAGCTAAGAAAAACTCCCAATCTGTATC 652
************************************************************
consensus_6925#0 TCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTA---- 1480
consensus_6925#1 TCTTTTACCAATGTAATATATAATTTATATAGATTATTATGCCTTGTAAAAA 704
************************************************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||