|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6928#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1415 fasta sequence
[AAATCTCCGAATCCAGTGCTCCACCCGTCCATCGAGCCCGGCTGAGGGACGGAGACGTCTTCGCCGCCGACGAGGCGGGTCCCGGCCTTGTCAGGTAAACCATATTCGTGAAAAACAGTATTAAACAGCAAATTGGCAGTGGACACCCTCAGCAACTGCACAACTCTTGTGGCCGAACGTGGAGTTCTTGGTTACGAGGTCCGTCAAAAAGCCCAAGAAAAAAAGTGAGGCAGATCAAATAACAAGCTTGAGTGCTTCTCTATTCGATAGAAGGTTCAGAGAGTGGAAAAAAAAAACAAAAAGCTCGAAGAAGGTCAGGAACATAAGCTGAGGGAGCCATGATGTCCACTCTCTCATTATCTTCCCCACTCTTCCTGGCAGCTCCTCCCAAAGTTCAAGGTGTGATTTCGTGTCGAGCGGCTTTAGCTAGTGCATCATGGAACTCTGTTATGGTACATGGTGGGAGGCAACGGCGTGCAACAATAGTAAACGTGCTTGGAAGAAAGTCGAAGACCAGAGAGACTATCGTCCCTGACCCTGACTATCGATTGCCAATTGTTATACTTGGGATAGCTGGTGCATTTGCATATGCAGACAATCTTCTTGCTGCTGCACCTGTAGGCCTACTGGGGTGTCTTCTTTTGTTCCAGACTACTAGAGTACGATTTGTCTTCGATGATGAGGCCCTGGTTTGTGTTCTCTATCTTCTCAAGTAAAATACTTATGTTGCTAAGTAAATGCATTACTGCTAAGATCTGTAAATCTGTAATGATTTACCTTTTTTTATAAAAAATCTGTTATGACTCTCTGTCACATGAATGATGTTATTCTTTTCACATCATAGCTTATGTGGATTAAGGTGTATTTCTGGGTCTTCATATCTATAATTTCATGAGTGTCCTTGATTCTATATTTGTGTTATTGCAGGAAGTGAAAGTGGGCGATCAGTTAGAGGAGTCAGGTGAAAATGTATTTGTCGGTGGCAAGAATCGTTGGAGGTACTCAACATTTGTGAATTGGGAACTGTGGTGGCCACAATTTCCTATCTTGGTTTATTTCAAGGAGACCCAAACAAAACCCGAAGGGCAAATTCATTTCTTCCCTGTGATTTTTAACGGCCGACAGCTTTATGATGCTATGGTGGAGCGTGCTGGACCTTCGGAAACTAGCGGTCCTAAATAGTGAGTGCTTCCCTCAGGGAGGCCATGAGTTGGGCTCCATGGATCCTGTAGATTTAGTTGATACATTTTAGAGGGACAAGACCTACTA-CTATGATGTACAATA-TTAGAACATGCA-ATTAACCTTTTAAGAATGATGTACACAGTATATATACTCTGTACTTCTGTATGAC--TATGTATAAAAAAGGCTTGATATAATGCAACACCAACACGGCATATTCCAATCTAAAAAAAAGA]
[+] EMBL CB681945 [AAATCTCCGAATCCAGTGCTCCACCCGTCCATCGAGCCCGGCTGAGGGACGGAGACGTCTTCGCCGCCGACGAGGCGGGTCCCGGCCTTGTCAGGTAAACCATATTCGTGAAAAACAGTATTAAACAGCAAATTGGCAGTGGACACCCTCAGCAACTGCACAACTCTTGTGGCCGAACGTGGAGTTCTTGGTTACGAGGTCCGTCAAAAAGCCCAAGAAAAAAAGTGAGGCAGATCAAATAACAAGCTTGAGTGCTTCTCTATTCGATAGAAGGTTCAGAGAGTGGAAAAAAAAAACAAAAAGCTCGAAGAAGGTCAGGAACATAAGCTGAGGGAGCCATGATGTCCACTCTCTCATTATCTTCCCCACTCTTCCTGGCAGCTCCTCCCAAAGTTCAAGGTGTGATTTCGTGTCGAGCGGCTTTAGCTAGTGCATCATGGAACTCTGTTATGGTACATGGTGGGAGGCAACGGCGTGCAACAATAGTAAACGTGCTTGGAAGAAAGTCGAAGACCAGAGAGACTATCGTCCCTGACCCTGACTATCGATTGCCAATTGTTATACTTGGGATAGCTGGTGCATTTGCATATGCAGACAATCTTCTTGCTGCTGCACCTGTAGGCCTACTGGGGTGTCTTCTTTTGTTCCAGACTACTAGAGTACGATTTGTCTTCGATGATGAGGCCCTGGTTTGTGTTCTCTATCTTCTCAAGTAAAATACTTATGTTGCTAAGTAAATGCATTACTGCTAAGATCTGTAAATCTGTAATGATTTACCTTTTTTTATAAAAAATCTGTTATGACTCTCTGTCACATGAAT ]
[-] EMBL CB681946 [ GCCTACTGGGGTGTCTTCTTTTGTTCCAGACTACTAGAGTACGATTTGTCTTCGATGATGAGGCCCTGGTTTGTGTTCTCTATCTTCTCAAGTAAAATACTTATGTTGCTAAGTAAATGCATTACTGCTAAGATCTGTAAATCTGTAATGATTTACCTTTTTTTATAAAAAATCTGTTATGACTCTCTGTCACATGAATGATGTTATTCTTTTCACATCATAGCTTATGTGGATTAAGGTGTATTTCTGGGTCTTCATATCTATAATTTCATGAGTGTCCTTGATTCTATATTTGTGTTATTGCAGGAAGTGAAAGTGGGCGATCAGTTAGAGGAGTCAGGTGAAAATGTATTTGTCGGTGGCAAGAATCGTTGGAGGTACTCAACATTTGTGAATTGGGAACTGTGGTGGCCACAATTTCCTATCTTGGTTTATTTCAAGGAGACCCAAACAAAACCCGAAGGGCAAATTCATTTCTTCCCTGTGATTTTTAACGGCCGACAGCTTTATGATGCTATGGTGGAGCGTGCTGGACCTTCGGAAACTAGCGGTCCTAAATAGTGAGTGCTTCCCTCAGGGAGGCCATGAGTTGGGCTCCATGGATCCTGTAGATTTAGTTGATACATTTTAGAGGGACAAGACCTACTA CTATGATGTACAATA TTAGAACATGCA ATTAACCTTTTAAGAATGATGTACACAGTATATATACTCTGTACTTCTGTATGAC TATGTATAAAAAAGGCTTGATATAATGCAACACCAACACGGCATATTCCAATCTAAAAAAAAGA]
[+] EMBL BI808029 [ gaccacAGACCTACTACCTATGATGTACAATATTTAGAACATGCACATTAACCTTTTAAGAATGATGTACACAGTATATATACTCTGTACTTCTGTATGACCGTATGTATAAAAAAGGC TGATTTAAT CAAaaaaaaaa ]
consensusID : consensus_6928#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 782 fasta sequence
[AAGGGGGGTAGCTGAAGAGTCCGATCCATTCACTTGTTATNTACTCACCCTTGGTTCTTCCTCTCTCTCTTCCAATCTCNGAATCCAGNGCTCCACCCGNNCATCGAGCCCGGNNTGAGGGACGGAGACGTCTTCGCCGCCGACGAGGCGGGTCCCGGCCTTGTCAGGTAANCCATATTCGTGAAAAACANTATTAAACAGCANATTGGCAGTGGACACCCTCANGANCTGCACAACTCTTGTGGCCGAACGTGGAGTTCTTGGTTACGAGGTCCGTCAAAAAGCCCAAGAAANAAAGTGAGGCAGATCAAATAACAAGCTTGAGTGCTTCTCTATTCGATAGAAGGNTCAGAGGGTGNAAAAAAAAACAAAAAGCTCGAAGAANGTCAGGAACATAAGCTGAGGGAGCCATGATGTCCACTCTCTCATTATCCTCCCCACTCTTCCTGGCAGCTCCTCCCAAAGTTCAAGGTGNGATTTCGTGTCGAGCGGCTTTAGCTAGTGCATCATGGAACTCTGTTATGGTACATGGTGGNAGGCAACGGCNTGCAACAATAGTAAACGTGCTTGGAAGAAAGTCGAAGACCAGTAGAGACTATTGTCCCCTGACCNTGACTATCGATTGCCAATTGGTATACTTGGGATAGCTGGAGCATTTGCATATGCANACAATCTTNTTGNTGATGCACCTGTAAGCCTACTGGGGGNGTCTTCCTTTCGGTCCAAACTACTANNGNACCGATTTGCCCTTCGATGATGNAGCCCCTGGNAATTGAAAGTGG]
[+] EMBL CA766736 [AAGGGGGGTAGCTGAAGAGTCCGATCCATTCACTTGTTATNTACTCACCCTTGGTTCTTCCTCTCTCTCTTCCAATCTCNGAATCCAGNGCTCCACCCGNNCATCGAGCCCGGNNTGAGGGACGGAGACGTCTTCGCCGCCGACGAGGCGGGTCCCGGCCTTGTCAGGTAANCCATATTCGTGAAAAACANTATTAAACAGCANATTGGCAGTGGACACCCTCANGANCTGCACAACTCTTGTGGCCGAACGTGGAGTTCTTGGTTACGAGGTCCGTCAAAAAGCCCAAGAAANAAAGTGAGGCAGATCAAATAACAAGCTTGAGTGCTTCTCTATTCGATAGAAGGNTCAGAGGGTGNAAAAAAAAACAAAAAGCTCGAAGAANGTCAGGAACATAAGCTGAGGGAGCCATGATGTCCACTCTCTCATTATCCTCCCCACTCTTCCTGGCAGCTCCTCCCAAAGTTCAAGGTGNGATTTCGTGTCGAGCGGCTTTAGCTAGTGCATCATGGAACTCTGTTATGGTACATGGTGGNAGGCAACGGCNTGCAACAATAGTAAACGTGCTTGGAAGAAAGTCGAAGACCAGTAGAGACTATTGTCCCCTGACCNTGACTATCGATTGCCAATTGGTATACTTGGGATAGCTGGAGCATTTGCATATGCANACAATCTTNTTGNTGATGCACCTGTAAGCCTACTGGGGGNGTCTTCCTTTCGGTCCAAACTACTANNGNACCGATTTGCCCTTCGATGATGNAGCCCCTGGNAATTGAAAGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6928#0 ------------------------------------------------------------
consensus_6928#1 AAGGGGGGTAGCTGAAGAGTCCGATCCATTCACTTGTTATNTACTCACCCTTGGTTCTTC 60
consensus_6928#0 ------------AAATCTCCGAATCCAGTGCTCCACCCGTCCATCGAGCCCGGCT-GAGG 47
consensus_6928#1 CTCTCTCTCTTCCAATCTCNGAATCCAGNGCTCCACCCGNNCATCGAGCCCGGNNTGAGG 120
****** ******** ********** ************ ****
consensus_6928#0 GACGGAGACGTCTTCGCCGCCGACGAGGCGGGTCCCGGCCTTGTCAGGTAAACCATATTC 107
consensus_6928#1 GACGGAGACGTCTTCGCCGCCGACGAGGCGGGTCCCGGCCTTGTCAGGTAANCCATATTC 180
*************************************************** ********
consensus_6928#0 GTGAAAAACAGTATTAAACAGCAAATTGGCAGTGGACACCCTCAGCAACTGCACAACTCT 167
consensus_6928#1 GTGAAAAACANTATTAAACAGCANATTGGCAGTGGACACCCTCANGANCTGCACAACTCT 240
********** ************ ******************** * ************
consensus_6928#0 TGTGGCCGAACGTGGAGTTCTTGGTTACGAGGTCCGTCAAAAAGCCCAAGAAAAAAAGTG 227
consensus_6928#1 TGTGGCCGAACGTGGAGTTCTTGGTTACGAGGTCCGTCAAAAAGCCCAAGAAANAAAGTG 300
***************************************************** ******
consensus_6928#0 AGGCAGATCAAATAACAAGCTTGAGTGCTTCTCTATTCGATAGAAGGTTCAGAGAGTGGA 287
consensus_6928#1 AGGCAGATCAAATAACAAGCTTGAGTGCTTCTCTATTCGATAGAAGGNTCAGAGGGTGNA 360
*********************************************** ****** *** *
consensus_6928#0 AAAAAAAAACAAAAAGCTCGAAGAAGGTCAGGAACATAAGCTGAGGGAGCCATGATGTCC 347
consensus_6928#1 AAAAAAAA-CAAAAAGCTCGAAGAANGTCAGGAACATAAGCTGAGGGAGCCATGATGTCC 419
******** **************** **********************************
consensus_6928#0 ACTCTCTCATTATCTTCCCCACTCTTCCTGGCAGCTCCTCCCAAAGTTCAAGGTGTGATT 407
consensus_6928#1 ACTCTCTCATTATCCTCCCCACTCTTCCTGGCAGCTCCTCCCAAAGTTCAAGGTGNGATT 479
************** **************************************** ****
consensus_6928#0 TCGTGTCGAGCGGCTTTAGCTAGTGCATCATGGAACTCTGTTATGGTACATGGTGGGAGG 467
consensus_6928#1 TCGTGTCGAGCGGCTTTAGCTAGTGCATCATGGAACTCTGTTATGGTACATGGTGGNAGG 539
******************************************************** ***
consensus_6928#0 CAACGGCGTGCAACAATAGTAAACGTGCTTGGAAGAAAGTCGAAGACCAG-AGAGACTAT 526
consensus_6928#1 CAACGGCNTGCAACAATAGTAAACGTGCTTGGAAGAAAGTCGAAGACCAGTAGAGACTAT 599
******* ****************************************** *********
consensus_6928#0 CGTCCC-TGACCCTGACTATCGATTGCCAATTGTTATACTTGGGATAGCTGGTGCATTTG 585
consensus_6928#1 TGTCCCCTGACCNTGACTATCGATTGCCAATTGGTATACTTGGGATAGCTGGAGCATTTG 659
***** ***** ******************** ****************** *******
consensus_6928#0 CATATGCAGACAATCTTCTTGCTGCTGCACCTGTAGGCCTACTGGGG-TGTCTTCTTTT- 643
consensus_6928#1 CATATGCANACAATCTTNTTGNTGATGCACCTGTAAGCCTACTGGGGGNGTCTTCCTTTC 719
******** ******** *** ** ********** *********** ****** ***
consensus_6928#0 GTTCCAGACTACTAGAGTAC-GATTTGTC-TTCGATGATGAGGCCCTGGTTTGTGTTCTC 701
consensus_6928#1 GGTCCAAACTACTANNGNACCGATTTGCCCTTCGATGATGNAGCCCCTGGNAATTGAAAG 779
* **** ******* * ** ****** * ********** **** * *
consensus_6928#0 TATCTTCTCAAGTAAAATACTTATGTTGCTAAGTAAATGCATTACTGCTAAGATCTGTAA 761
consensus_6928#1 TGG--------------------------------------------------------- 782
*
consensus_6928#0 ATCTGTAATGATTTACCTTTTTTTATAAAAAATCTGTTATGACTCTCTGTCACATGAATG 821
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 ATGTTATTCTTTTCACATCATAGCTTATGTGGATTAAGGTGTATTTCTGGGTCTTCATAT 881
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 CTATAATTTCATGAGTGTCCTTGATTCTATATTTGTGTTATTGCAGGAAGTGAAAGTGGG 941
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 CGATCAGTTAGAGGAGTCAGGTGAAAATGTATTTGTCGGTGGCAAGAATCGTTGGAGGTA 1001
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 CTCAACATTTGTGAATTGGGAACTGTGGTGGCCACAATTTCCTATCTTGGTTTATTTCAA 1061
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 GGAGACCCAAACAAAACCCGAAGGGCAAATTCATTTCTTCCCTGTGATTTTTAACGGCCG 1121
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 ACAGCTTTATGATGCTATGGTGGAGCGTGCTGGACCTTCGGAAACTAGCGGTCCTAAATA 1181
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 GTGAGTGCTTCCCTCAGGGAGGCCATGAGTTGGGCTCCATGGATCCTGTAGATTTAGTTG 1241
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 ATACATTTTAGAGGGACAAGACCTACTACTATGATGTACAATATTAGAACATGCAATTAA 1301
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 CCTTTTAAGAATGATGTACACAGTATATATACTCTGTACTTCTGTATGACTATGTATAAA 1361
consensus_6928#1 ------------------------------------------------------------
consensus_6928#0 AAAGGCTTGATATAATGCAACACCAACACGGCATATTCCAATCTAAAAAAAAGA 1415
consensus_6928#1 ------------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||