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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence
[TTTTTTTTTTTTGCTCAGGACAATGTTTTCCATCTATCAGTCATCCTTTTTGTACAGTTTCCAAGATTACATTCACAACAGCAAATGCCACTAAAAGACTATCTCAAAAATGGCTCACACATAAGGTGTTGAAGCCATGGAACCTCCACCCCCTCTCCCTCTCTCTCATCAAAAAGACCATCGCCCTCAAAACAACCCATTATTTTGATCGAGAAAAGCACTTGCGGACGACCATCACTCCATGGCTGGCCATAAACTCATTCCAAGAAAGCTTTCACTTCATTTGATAGTGAAACGCAGGATGGACTAGTTTCCCACACACATTTGCCAACCTATCATTTGGCTCCCAAAATTAGTGCAGTTCACAAATTTCTGTGCAGACAGGAAACGTTAGAAGCATCCGCCCCAGTCATGCTTGACCTCCTTATGTATCCAAAAATGGTCTATAAGATGTCAATCTATTTCGCCCTCCTCAACATCAATCGTTGGTTCATCTGCAGACTCACCTTCCTCATCCTCTTCATCATCATTTTTCATATACAAACCAAGCTGTTCTAAAGGGTTGCTACCTAGCTGAAATCCAAGGCCTTCAGGCGTATGAGTTGGACTCGTCTCACCAACCGAGCTGGGAAACTGTTCACCTGATGTAACAGTTCCCAGCATTTCAAGATCTTTCANAAAGAGGTTCCCTTCA]
[+] EMBL CA760334 [TTTTTTTTTTTTGCTCAGGACAATGTTTTCCATCTATCAGTCATCCTTTTTGTACAGTTTCCAAGATTACATTCACAACAGCAAATGCCACTAAAAGACTATCTCAAAAATGGCTCACACATAAGGTGTTGAAGCCATGGAACCTCCACCCCCTCTCCCTCTCTCTCATCAAAAAGACCATCGCCCTCAAAACAACCCATTATTTTGATCGAGAAAAGCACTTGCGGACGACCATCACTCCATGGCTGGCCATAAACTCATTCCAAGAAAGCTTTCACTTCATTTGATAGTGAAACGCAGGATGGACTAGTTTCCCACACACATTTGCCAACCTATCATTTGGCTCCCAAAATTAGTGCAGTTCACAAATTTCTGTGCAGACAGGAAACGTTAGAAGCATCCGCCCCAGTCATGCTTGACCTCCTTATGTATCCAAAAATGGTCTATAAGATGTCAATCTATTTCGCCCTCCTCAACATCAATCGTTGGTTCATCTGCAGACTCACCTTCCTCATCCTCTTCATCATCATTTTTCATATACAAACCAAGCTGTTCTAAAGGGTTGCTACCTAGCTGAAATCCAAGGCCTTCAGGCGTATGAGTTGGACTCGTCTCACCAACCGAGCTGGGAAACTGTTCACCTGATGTAACAGTTCCCAGCATTTCAAGATCTTTCANAAAGAGGTTCCCTTCA]
consensusID : consensus_6931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 594 fasta sequence
[AATCATTCAAGTTCTCAAAGAATGGGCACAAGATAGCTCAGGACAATGTTTTCCATCTATCAGTCATCCTTTTTGTACAGTTTCCAAGATTACATTCACAACAGCAAATGCCACTAAAAGACTATCTCAAAAATGGCTCACACATAAGGTGTTGAAGCCATGGAACCTCCACCCCCTCTCCCTCTCTCTCATCAAAAAGACCATCGCCCTCAAAACAACCCATTATTTTGATCGAGAAAAGCACTTGCGGACGACCATCACTTCATGGCTGGCCATAAACTCATTCCAAGAAAGCTTTCACTTCATTTGATAGTGAAACGCATGATGGACTAGTTTCCCACACACATTTGCCAACCTATCATTTGGCTCCCAAAATTAGTGCAGTTCACAAATTTCTGTGCAGACAGGAAACGTTAGAAGCATCCGCCCCAGTCATGCTTGACCTCCTTATGTATCCAAAAATGGTCTATAAGATGTCAATCTATTTCGCCCTCCTCAACATCAATCGTTGGTTCATCTGCAGACTCACCTTCCTCATCCTCTTCATCATCATTTTTCATATACAAACCAAGCTGTTCTAAAGGGTTGCTACCT]
[-] EMBL AK058548 [AATCATTCAAGTTCTCAAAGAATGGGCACAAGATAGCTCAGGACAATGTTTTCCATCTATCAGTCATCCTTTTTGTACAGTTTCCAAGATTACATTCACAACAGCAAATGCCACTAAAAGACTATCTCAAAAATGGCTCACACATAAGGTGTTGAAGCCATGGAACCTCCACCCCCTCTCCCTCTCTCTCATCAAAAAGACCATCGCCCTCAAAACAACCCATTATTTTGATCGAGAAAAGCACTTGCGGACGACCATCACTTCATGGCTGGCCATAAACTCATTCCAAGAAAGCTTTCACTTCATTTGATAGTGAAACGCATGATGGACTAGTTTCCCACACACATTTGCCAACCTATCATTTGGCTCCCAAAATTAGTGCAGTTCACAAATTTCTGTGCAGACAGGAAACGTTAGAAGCATCCGCCCCAGTCATGCTTGACCTCCTTATGTATCCAAAAATGGTCTATAAGATGTCAATCTATTTCGCCCTCCTCAACATCAATCGTTGGTTCATCTGCAGACTCACCTTCCTCATCCTCTTCATCATCATTTTTCATATACAAACCAAGCTGTTCTAAAGGGTTGCTACCT]
[-] EMBL AU056112 [ tttTTCAAGNNCTCAAAGAATNGGCACAAGATAGCTCAGGACAATGTTTTCCATCTATCAGTCATCCTTTTTGTACAGTTTCCAAGATTACATTCACAACAGCAAATGCCACTAAAAGACTATCTCAAAAATGGCTCACACATAAGGTGTTGAAGCCATGGAACCTCCACCCCCTCTCCCNCNCTCTCATCAAAAAGACCATCGCCCTCAAAACAACCCATTATTTTGATCGAGAAAAGCACTTGCGGACGACCATCACTTCATGGCTGGCCATAAACTCATTCCAAGAAAGCTTTCACNTCATTTGATAGTGAAACGCATGATGGACTAGTTTCCCACACACATTTGCCAACCNATCATTTGGCTCCCAAAATTAGTGCAGTTCACAAATTTCTGTGCAGACAGGAAACGTTAGAAGCA ]
[-] EMBL D42676 [ GGNTGGCTATAAACTCATTCNAAGAAAGC TTCACTTCATTTGATAGT AAACGNATGATGGACTAGTTTCCTACACACATTTGCTAACCTATCATTTGGCTCCCAAAATTAGTGCAGTTCACAAATTTCTGTGCAGACAGTAAACGTTAGAA NATCCGCCCCAGTCATGCTTGACCTCCTTATGTATCCAAAAATGGTCTATAAGATGTCAATCTATTTCGCnc ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6931#0 -----------------------TTTTTTTTTTTTGCTCAGGACAATGTTTTCCATCTAT 37
consensus_6931#1 AATCATTCAAGTTCTCAAAGAATGGGCACAAGATAGCTCAGGACAATGTTTTCCATCTAT 60
* *************************
consensus_6931#0 CAGTCATCCTTTTTGTACAGTTTCCAAGATTACATTCACAACAGCAAATGCCACTAAAAG 97
consensus_6931#1 CAGTCATCCTTTTTGTACAGTTTCCAAGATTACATTCACAACAGCAAATGCCACTAAAAG 120
************************************************************
consensus_6931#0 ACTATCTCAAAAATGGCTCACACATAAGGTGTTGAAGCCATGGAACCTCCACCCCCTCTC 157
consensus_6931#1 ACTATCTCAAAAATGGCTCACACATAAGGTGTTGAAGCCATGGAACCTCCACCCCCTCTC 180
************************************************************
consensus_6931#0 CCTCTCTCTCATCAAAAAGACCATCGCCCTCAAAACAACCCATTATTTTGATCGAGAAAA 217
consensus_6931#1 CCTCTCTCTCATCAAAAAGACCATCGCCCTCAAAACAACCCATTATTTTGATCGAGAAAA 240
************************************************************
consensus_6931#0 GCACTTGCGGACGACCATCACTCCATGGCTGGCCATAAACTCATTCCAAGAAAGCTTTCA 277
consensus_6931#1 GCACTTGCGGACGACCATCACTTCATGGCTGGCCATAAACTCATTCCAAGAAAGCTTTCA 300
********************** *************************************
consensus_6931#0 CTTCATTTGATAGTGAAACGCAGGATGGACTAGTTTCCCACACACATTTGCCAACCTATC 337
consensus_6931#1 CTTCATTTGATAGTGAAACGCATGATGGACTAGTTTCCCACACACATTTGCCAACCTATC 360
********************** *************************************
consensus_6931#0 ATTTGGCTCCCAAAATTAGTGCAGTTCACAAATTTCTGTGCAGACAGGAAACGTTAGAAG 397
consensus_6931#1 ATTTGGCTCCCAAAATTAGTGCAGTTCACAAATTTCTGTGCAGACAGGAAACGTTAGAAG 420
************************************************************
consensus_6931#0 CATCCGCCCCAGTCATGCTTGACCTCCTTATGTATCCAAAAATGGTCTATAAGATGTCAA 457
consensus_6931#1 CATCCGCCCCAGTCATGCTTGACCTCCTTATGTATCCAAAAATGGTCTATAAGATGTCAA 480
************************************************************
consensus_6931#0 TCTATTTCGCCCTCCTCAACATCAATCGTTGGTTCATCTGCAGACTCACCTTCCTCATCC 517
consensus_6931#1 TCTATTTCGCCCTCCTCAACATCAATCGTTGGTTCATCTGCAGACTCACCTTCCTCATCC 540
************************************************************
consensus_6931#0 TCTTCATCATCATTTTTCATATACAAACCAAGCTGTTCTAAAGGGTTGCTACCTAGCTGA 577
consensus_6931#1 TCTTCATCATCATTTTTCATATACAAACCAAGCTGTTCTAAAGGGTTGCTACCT------ 594
******************************************************
consensus_6931#0 AATCCAAGGCCTTCAGGCGTATGAGTTGGACTCGTCTCACCAACCGAGCTGGGAAACTGT 637
consensus_6931#1 ------------------------------------------------------------
consensus_6931#0 TCACCTGATGTAACAGTTCCCAGCATTTCAAGATCTTTCANAAAGAGGTTCCCTTCA 694
consensus_6931#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||