These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6939#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2652 fasta sequence [CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGGTGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTTTGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGCTCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCGGAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCGTCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCCTCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCGGCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAGTCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGCGGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAGCACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCGCCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCGCCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGGCAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATTCCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGACGCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCGGGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAGGCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTGTGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGGCTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCAAGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCGGACGGCGGCGGGTACTACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGCGGGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCGGGACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCGACGGCAAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCTCGAACACCACCTTCATGGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCTGCGGATTGCCATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCGGATTATCCACCGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACAGGTGGCAGACTTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCGCATCATGGGCACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGACCGCTCCGACGTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCCGGTTGACCAGACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCTGGCGGATGCGGTAGAGACGGGTGATCTCAGTGAGCTGGTTGATCCACGGCTAGAGGGCGCATACAACCGCAATGAGATGATGACGATGGTGGAAGCAGCGGCCGCATGTGTTCGCCACTCCGCTCCCAAACGGCCGCGGATGGTGCAGGTGATGCGGGTACTAGATGAGGGGAGCATGACGGACCTTAGCAATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCACTGGTGGCAGCGACGCTGCTGACATCCAGCAACTCCGTCGTATCGCATTCGCCTCCGAGGAGTTCACCGGAGAGTTTGAGCAGAGAACAACCAACTCCAACTCTGAGTCGCGGCCGATGAATCGGATACCAGAGTAATAACGCCTTGTATGTTTTGAAGTGCTTAGCACCGGTGCAATTACGTGATAAGGGTGACAACAAGAGGTGAGTCCATATAGAACTGAACTGAACTCAAAAACACATGTAGGAAATTCAGGGTTTTGGGTCTAATTTTCGGCAGTTTGTACTTATGTACTTCAAAACCCTTTTGCACATGGAGGACATTCAATCAAGTGATAAAGATATAGGGAAATCAGTCTATTAGGATCCATAATGGTTTGCTAAGCACATACCATCAGC] [+] EMBL AK100169 [CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGGTGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTTTGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGCTCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCGGAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCGTCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCCTCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCGGCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAGTCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGCGGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAGCACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCGCCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCGCCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGGCAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATTCCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGACGCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCGGGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAGGCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTGTGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGGCTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCAAGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCGGACGGCGGCGGGTACTACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGCGGGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCGGGACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCGACGGCAAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCTCGAACACCACCTTCATGGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCTGCGGATTGCCATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCGGATTATCCACCGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACAGGTGGCAGACTTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCGCATCATGGGCACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGACCGCTCCGACGTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCCGGTTGACCAGACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCTGGCGGATGCGGTAGAGACGGGTGATCTCAGTGAGCTGGTTGATCCACGGCTAGAGGGCGCATACAACCGCAATGAGATGATGACGATGGTGGAAGCAGCGGCCGCATGTGTTCGCCACTCCGCTCCCAAACGGCCGCGGATGGTGCAGGTGATGCGGGTACTAGATGAGGGGAGCATGACGGACCTTAGCAATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCACTGGTGGCAGCGACGCTGCTGACATCCAGCAACTCCGTCGTATCGCATTCGCCTCCGAGGAGTTCACCGGAGAGTTTGAGCAGAGAACAACCAACTCCAACTCTGAGTCGCGGCCGATGAATCGGATACCAGAGTAATAACGCCTTGTATGTTTTGAAGTGCTTAGCACCGGTGCAATTACGTGATAAGGGTGACAACAAGAGGTGAGTCCATATAGAACTGAACTGAACTCAAAAACACATGTAGGAAATTCAGGGTTTTGGGTCTAATTTTCGGCAGTTTGTACTTATGTACTTCAAAACCCTTTTGCACATGGAGGACATTCAATCAAGTGATAAAGATATAGGGAAATCAGTCTATTAGGATCCATAATGGTTTGCTAAGCACATACCATCAGC] consensusID : consensus_6939#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2141 fasta sequence [CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGTTCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGGCCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAATTCTTTTATTTATCGATTTAAATTATAATTAGCTGGTTTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTCCCGGTTGGATATCCATTTAATCCCGGTTTTCCAACCGGGAGTAAGGATCCGGGACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCAGGACTAAAAAGAAGGGATCAACCGGGACTAAACAGACAATA] [+] EMBL AK100339 [CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGTTCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGGCCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAATTCTTTTATTTATCGATTTAAATTATAATTAGCTGGTTTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTCCCGGTTGGATATCCATTTAATCCCGGTTTTCCAACCGGGAGTAAGGATCCGGGACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCAGGACTAAAAAGAAGGGATCAACCGGGACTAAACAGACAATA] [+] EMBL AK071821 [CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGTTCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGGACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCT CACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGACCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAATTCTTTTATTTATCGATTCAAATTATAATT ] consensusID : consensus_6939#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 249 fasta sequence [GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCTCGAGTTCCACCTCCATGGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCTGCGCATTGCGTCGGGTCGGCGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCGGATCATCCANCGCGACATCAAATCCGCCA] [+] EMBL AU056321 [GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCTCGAGTTCCACCTCCATGGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCTGCGCATTGCGTCGGGTCGGCGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCGGATCATCCANCGCGACATCAAATCCGCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6939#0 CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGG 60 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 TGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTT 120 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 TGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGC 180 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 TCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCG 240 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 GAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCG 300 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 TCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCC 360 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ------------------------------------------------------------ consensus_6939#0 TCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCG 420 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 -----------CCCTCTTCCCTTTGG---CCCTGTTGCCCCCAATTCGCCTTCGACCCCT 46 consensus_6939#0 GCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAG 480 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 TCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGG-GTTCACAAA 105 consensus_6939#0 TCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGC 540 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 TTTTTTC---AATTGTGTTCTTATTTATTAGAGGTAATTAAGTA-ATTATTATTAGAGGT 161 consensus_6939#0 GGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAG 600 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAG--GTAATGGCAG 219 consensus_6939#0 CACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCG 660 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 CCTCG--CCGGAG--TCGTCTCCGTCG--TCGGCCAACTCCA----CCACCCCGTCAGCA 269 consensus_6939#0 CCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCG 720 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 CCGTCG------CCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCC------CCA 317 consensus_6939#0 CCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGG 780 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 TCATCGCCGCCGCCACCA----GCATCGACGAACGC--GCCACCAAAATCAGCTGGCGGC 371 consensus_6939#0 CAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATT 840 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 --GTTTCAT-CTTCCACGCAAGCGCAACCATCGTCGG--AATCA-TCGTCGGAGTCTACG 425 consensus_6939#0 CCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGAC 900 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ACTACGCCTTCGGCGCC----AGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGA--GAG 479 consensus_6939#0 GCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCG 960 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 TCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCG 539 consensus_6939#0 GGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAG 1020 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 A-TGGTTGCGGTG-TTGGCGGGTGTGGTGGC----CATCGTGGTGTGCT--GCTGTATAA 591 consensus_6939#0 GCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTG 1080 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 A--GATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGA--------ACATGCCCTTCTTC 641 consensus_6939#0 TGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGG 1140 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ACCGACGAGAAGGGCAACG-------TGTACTACGCCACAGGCGGCCTGCCTCCCATGTG 694 consensus_6939#0 CTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCA 1200 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 GCAG-----CAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCC---------- 739 consensus_6939#0 AGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCG 1260 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 -GCC-CGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGG 797 consensus_6939#0 GACGGCGGCGGGTAC-TACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGC 1319 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 TACT-CGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGG 856 consensus_6939#0 GGGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCG 1379 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 TTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGC 916 consensus_6939#0 GGACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCG---A 1436 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 GGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAA 976 consensus_6939#0 CGGCAAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTT 1496 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 CGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTT 1036 consensus_6939#0 CCAGGCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGG 1556 consensus_6939#2 -------------GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGG 47 consensus_6939#1 CCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGG 1096 ** *********** ** ***************** ** ** ** ** consensus_6939#0 CTACTGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCT 1616 consensus_6939#2 CTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCT 107 consensus_6939#1 ATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCT 1156 ************* * *** ***** ************* ** *** ***** consensus_6939#0 CGAACACCACCTTCAT------GGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCT 1670 consensus_6939#2 CGAGTTCCACCTCCAT------GGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCT 161 consensus_6939#1 CGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCA 1216 *** ****** ** ** *** * ** * *** ** ** *** consensus_6939#0 GCGGATTGCCATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCG 1730 consensus_6939#2 GCGCATTGC-GTCGGGTCGGCGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCG 220 consensus_6939#1 CAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCG 1276 * ** ** * ** * ** ***** ** ** ***** ***** ******** ** ** consensus_6939#0 GATTATCCACCGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACA 1790 consensus_6939#2 GATCATCCANCGCGACATCAAATCCGCCA------------------------------- 249 consensus_6939#1 GATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCAT 1336 *** ***** ** ******** * **** consensus_6939#0 GGTGGCAGACTTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCG 1850 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 GGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCG 1396 consensus_6939#0 CATCATGGGCACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGA 1910 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 CGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGA 1456 consensus_6939#0 CCGCTCCGACGTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCC 1970 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 GAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCC 1516 consensus_6939#0 GGTTGACCAGACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCT 2030 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 CGTCGAC-ACCTCCAACTACATGGAG--GACAGCCTCGTGGACTGGGCGAGGCCGGTGCT 1573 consensus_6939#0 GGCGGAT-------------GCGGTAGAGACGGGTGATC--TCAGTGAGCTGGTTGATCC 2075 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 GGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTC 1633 consensus_6939#0 ACGGCTAGAGGGCGCATACAACCGCAATG-AGATGATGACGATGGTGGAAGCAGCGGCCG 2134 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 GCGGCTGGGCGGGGAGTACT-CGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGG 1692 consensus_6939#0 CATGTGTTCGCCACTCCGCTCCCAAACGGCCGCGGATGGTGCAGGTGATGCGGGTACTAG 2194 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 CGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGG 1752 consensus_6939#0 ATGAGGGGAGCATGACGGACCTTAGCAATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCA 2254 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 A-GGGGGACGCCTCGC-----------------TCTCGCTGGACCACCACCACGA---CG 1791 consensus_6939#0 CTGGTGGCAGCGACGCTGCTGACATCCAGCAACTCCGTCGTATCGCATTCGCCTCCGAGG 2314 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCG 1851 consensus_6939#0 AGTTCACCGGAGAGTTTGAGCAGAGAACAACCAACTCCAACTCTGAGTCGCGGCCGATGA 2374 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ACTACACCGACGACTAC---------TCCACCACCTCCACCTCC-ACCCACTCCTCCCGC 1901 consensus_6939#0 ATCGGATACCAGAGTAATAACGCCTTGTATGTTTTGAAGTGCTTAGCACCGGTGCAATTA 2434 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 CTCCCACCCAAGCGCTA-ATCATCACTAATTCTTTTATTTATCGATTTAAATTATAATTA 1960 consensus_6939#0 CGTGATAAGGGTGACAACAAGAGGTGAGTCCATATAGAACTGAACTGAACTCAAAAACAC 2494 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 GCTGGT----TTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTC-------C 2009 consensus_6939#0 ATGTAGGAAATTCAGGGTTTTGGGTCTAATTTTCGGCAGTTTGTACTTATGTACTTCAAA 2554 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 CGGTTGGATATCCA----TTTAATCCCGGTTTTC--CAACCGGGAGTAAGGA--TCCGGG 2061 consensus_6939#0 ACCCTTTTGCACATGGAGGACATTCA-ATCAAGTGATAAAGATATAGGGAAATCAGTCTA 2613 consensus_6939#2 ------------------------------------------------------------ consensus_6939#1 ACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCAGGACTAAAAAGAAGGGATCAA 2121 consensus_6939#0 TTAGGATCCATAATGGTTTGCTAAGCACATACCATCAGC 2652 consensus_6939#2 --------------------------------------- consensus_6939#1 CCGGGACTAAACAGACAATA------------------- 2141 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||