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Oryza sativa
cluster # 6939 cluster # 6939       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6939#0 length = 2652 sequences # 1  
consensus_6939#1 length = 2141 sequences # 2  
consensus_6939#2 length = 249 sequences # 1  

consensusID : consensus_6939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2652
fasta sequence
                              [CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGGTGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTTTGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGCTCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCGGAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCGTCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCCTCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCGGCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAGTCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGCGGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAGCACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCGCCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCGCCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGGCAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATTCCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGACGCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCGGGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAGGCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTGTGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGGCTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCAAGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCGGACGGCGGCGGGTACTACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGCGGGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCGGGACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCGACGGCAAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCTCGAACACCACCTTCATGGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCTGCGGATTGCCATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCGGATTATCCACCGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACAGGTGGCAGACTTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCGCATCATGGGCACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGACCGCTCCGACGTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCCGGTTGACCAGACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCTGGCGGATGCGGTAGAGACGGGTGATCTCAGTGAGCTGGTTGATCCACGGCTAGAGGGCGCATACAACCGCAATGAGATGATGACGATGGTGGAAGCAGCGGCCGCATGTGTTCGCCACTCCGCTCCCAAACGGCCGCGGATGGTGCAGGTGATGCGGGTACTAGATGAGGGGAGCATGACGGACCTTAGCAATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCACTGGTGGCAGCGACGCTGCTGACATCCAGCAACTCCGTCGTATCGCATTCGCCTCCGAGGAGTTCACCGGAGAGTTTGAGCAGAGAACAACCAACTCCAACTCTGAGTCGCGGCCGATGAATCGGATACCAGAGTAATAACGCCTTGTATGTTTTGAAGTGCTTAGCACCGGTGCAATTACGTGATAAGGGTGACAACAAGAGGTGAGTCCATATAGAACTGAACTGAACTCAAAAACACATGTAGGAAATTCAGGGTTTTGGGTCTAATTTTCGGCAGTTTGTACTTATGTACTTCAAAACCCTTTTGCACATGGAGGACATTCAATCAAGTGATAAAGATATAGGGAAATCAGTCTATTAGGATCCATAATGGTTTGCTAAGCACATACCATCAGC]

[+] EMBL AK100169             [CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGGTGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTTTGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGCTCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCGGAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCGTCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCCTCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCGGCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAGTCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGCGGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAGCACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCGCCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCGCCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGGCAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATTCCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGACGCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCGGGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAGGCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTGTGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGGCTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCAAGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCGGACGGCGGCGGGTACTACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGCGGGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCGGGACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCGACGGCAAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCTCGAACACCACCTTCATGGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCTGCGGATTGCCATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCGGATTATCCACCGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACAGGTGGCAGACTTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCGCATCATGGGCACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGACCGCTCCGACGTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCCGGTTGACCAGACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCTGGCGGATGCGGTAGAGACGGGTGATCTCAGTGAGCTGGTTGATCCACGGCTAGAGGGCGCATACAACCGCAATGAGATGATGACGATGGTGGAAGCAGCGGCCGCATGTGTTCGCCACTCCGCTCCCAAACGGCCGCGGATGGTGCAGGTGATGCGGGTACTAGATGAGGGGAGCATGACGGACCTTAGCAATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCACTGGTGGCAGCGACGCTGCTGACATCCAGCAACTCCGTCGTATCGCATTCGCCTCCGAGGAGTTCACCGGAGAGTTTGAGCAGAGAACAACCAACTCCAACTCTGAGTCGCGGCCGATGAATCGGATACCAGAGTAATAACGCCTTGTATGTTTTGAAGTGCTTAGCACCGGTGCAATTACGTGATAAGGGTGACAACAAGAGGTGAGTCCATATAGAACTGAACTGAACTCAAAAACACATGTAGGAAATTCAGGGTTTTGGGTCTAATTTTCGGCAGTTTGTACTTATGTACTTCAAAACCCTTTTGCACATGGAGGACATTCAATCAAGTGATAAAGATATAGGGAAATCAGTCTATTAGGATCCATAATGGTTTGCTAAGCACATACCATCAGC]


>consensus_6939#0 CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGG TGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTT TGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGC TCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCG GAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCG TCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCC TCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCG GCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAG TCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGC GGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAG CACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCG CCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCG CCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGG CAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATT CCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGAC GCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCG GGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAG GCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTG TGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGG CTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCA AGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCG GACGGCGGCGGGTACTACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGCG GGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCGG GACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCGACGGC AAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAG GCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGGCTAC TGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCTCGAA CACCACCTTCATGGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCTGCGGATTGCC ATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCGGATTATCCAC CGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACAGGTGGCAGAC TTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCGCATCATGGGC ACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGACCGCTCCGAC GTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCCGGTTGACCAG ACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCTGGCGGATGCG GTAGAGACGGGTGATCTCAGTGAGCTGGTTGATCCACGGCTAGAGGGCGCATACAACCGC AATGAGATGATGACGATGGTGGAAGCAGCGGCCGCATGTGTTCGCCACTCCGCTCCCAAA CGGCCGCGGATGGTGCAGGTGATGCGGGTACTAGATGAGGGGAGCATGACGGACCTTAGC AATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCACTGGTGGCAGCGACGCTGCTGACATC CAGCAACTCCGTCGTATCGCATTCGCCTCCGAGGAGTTCACCGGAGAGTTTGAGCAGAGA ACAACCAACTCCAACTCTGAGTCGCGGCCGATGAATCGGATACCAGAGTAATAACGCCTT GTATGTTTTGAAGTGCTTAGCACCGGTGCAATTACGTGATAAGGGTGACAACAAGAGGTG AGTCCATATAGAACTGAACTGAACTCAAAAACACATGTAGGAAATTCAGGGTTTTGGGTC TAATTTTCGGCAGTTTGTACTTATGTACTTCAAAACCCTTTTGCACATGGAGGACATTCA ATCAAGTGATAAAGATATAGGGAAATCAGTCTATTAGGATCCATAATGGTTTGCTAAGCA CATACCATCAGC



consensusID : consensus_6939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2141
fasta sequence
                              [CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGTTCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGGCCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAATTCTTTTATTTATCGATTTAAATTATAATTAGCTGGTTTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTCCCGGTTGGATATCCATTTAATCCCGGTTTTCCAACCGGGAGTAAGGATCCGGGACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCAGGACTAAAAAGAAGGGATCAACCGGGACTAAACAGACAATA]

[+] EMBL AK100339             [CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGTTCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGGCCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAATTCTTTTATTTATCGATTTAAATTATAATTAGCTGGTTTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTCCCGGTTGGATATCCATTTAATCCCGGTTTTCCAACCGGGAGTAAGGATCCGGGACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCAGGACTAAAAAGAAGGGATCAACCGGGACTAAACAGACAATA]
[+] EMBL AK071821             [CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGTTCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGTCGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAATCAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGTCTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGTCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGATGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACGTGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGGACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCT CACCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGGCGAGACCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCGACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAATCATCACTAATTCTTTTATTTATCGATTCAAATTATAATT                                                                                                                                                                                      ]


>consensus_6939#1 CCCTCTTCCCTTTGGCCCTGTTGCCCCCAATTCGCCTTCGACCCCTTCTCCTTCTCCTTC AACATCTAATCATCACGGAGAAAGGATAAGGGGTGGGTTCACAAATTTTTTCAATTGTGT TCTTATTTATTAGAGGTAATTAAGTAATTATTATTAGAGGTACAAATTAAGGTCTCTGAG AGAGAGGGGCCGGGGTGGGCCCTAGCTAGGTAATGGCAGCCTCGCCGGAGTCGTCTCCGT CGTCGGCCAACTCCACCACCCCGTCAGCACCGTCGCCGTCTTCGTCGTTGTCAAAATCAC CCTCACCTCCCTCCCCATCATCGCCGCCGCCACCAGCATCGACGAACGCGCCACCAAAAT CAGCTGGCGGCGTTTCATCTTCCACGCAAGCGCAACCATCGTCGGAATCATCGTCGGAGT CTACGACTACGCCTTCGGCGCCAGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGAGAGT CCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCGA TGGTTGCGGTGTTGGCGGGTGTGGTGGCCATCGTGGTGTGCTGCTGTATAAAGATAACGA AGAAGAAGAAGCGGCCGCCGCCGCCGAACATGCCCTTCTTCACCGACGAGAAGGGCAACG TGTACTACGCCACAGGCGGCCTGCCTCCCATGTGGCAGCAGCACGGCAGCAGCAACTACA GCATCCCACCTCCGCCGCCGCCCGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCG GCGAGATGGGGATGGGGTACTCGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGC CGAACGTGGCGCTGGGTTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGA CGTCGGGGTTCTCGGCGGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGG GGGTGCTCGCCGGGAACGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGC AGGGGGAGCGGGAGTTCCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACC TCGTGTCTCTGGTGGGATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCG TCCCCAACGGCACCCTCGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAG ACTGGTCGGCGCGGCACAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACG AAGACTGCCACCCGCGGATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACG CCAACTACGAGGCCATGGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACA CCCACGTCTCCACCCGCGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCA CCGGCAAGCTCACCGAGAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCC TCACCGGGCGGCGGCCCGTCGACACCTCCAACTACATGGAGGACAGCCTCGTGGACTGGG CGAGGCCGGTGCTGGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGG AGCTGGTGGACTCGCGGCTGGGCGGGGAGTACTCGGCGGTGGAGGTGGAGAGGATGGCGG CGTGCGCGGCGGCGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCG TGAGGGCGCTGGAGGGGGACGCCTCGCTCTCGCTGGACCACCACCACGACGACGACTTCT CCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCGACTACACCG ACGACTACTCCACCACCTCCACCTCCACCCACTCCTCCCGCCTCCCACCCAAGCGCTAAT CATCACTAATTCTTTTATTTATCGATTTAAATTATAATTAGCTGGTTTCACAAATCACCC TACACTCGTGGAGAAACCATCTTTACTCCCGGTTGGATATCCATTTAATCCCGGTTTTCC AACCGGGAGTAAGGATCCGGGACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCA GGACTAAAAAGAAGGGATCAACCGGGACTAAACAGACAATA



consensusID : consensus_6939#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence
                              [GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCTCGAGTTCCACCTCCATGGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCTGCGCATTGCGTCGGGTCGGCGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCGGATCATCCANCGCGACATCAAATCCGCCA]

[+] EMBL AU056321             [GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCTCGAGTTCCACCTCCATGGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCTGCGCATTGCGTCGGGTCGGCGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCGGATCATCCANCGCGACATCAAATCCGCCA]


>consensus_6939#2 GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGGCTACTGCATCGCC GGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCTCGAGTTCCACCTC CATGGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCTGCGCATTGCGTCGGGTCGG CGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCGGATCATCCANCGCGACATCA AATCCGCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6939#0      CAAAAGCTAGCTGTCTGGGAGATGGTGGTGGATGAAGGGATGTGCTGCTAGCAGAAATGG 60
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      TGATCGGGAGCAAATGTGGGTTGATGATTCTCGTACCAGAAGCATTGTTTGATACGATTT 120
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      TGATCAGCTGGCGGGAGAGGAAACATGTCATCGGAATCGGATCAAGCCCCCTCGCCAAGC 180
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      TCGCCCTCGTCGTCGTCGTCGTCGTCGTCAGGAAATGGTTCCAACAAGGCGCCTCCGCCG 240
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      GAAGAGTCTGATAATTCGAGCAGCAATGGGTCGTCGTCGTCTAGCCCGACACCTCCTTCG 300
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      TCGCAGAGCTCCGACTCCGACTCCGGAGGAGGCTCGAGTTCGCCGTCACAAGGCTCGTCC 360
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ------------------------------------------------------------
                                                                                  

consensus_6939#0      TCGCCTAGCCCGCCTCCGCCGTCGGGGAGCTCTTCCGAGTCGCATTCGTCTCCACCGCCG 420
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      -----------CCCTCTTCCCTTTGG---CCCTGTTGCCCCCAATTCGCCTTCGACCCCT 46
                                                                                  

consensus_6939#0      GCGCCGCCCCAGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGAGTGGTGGAGGTTCCAAG 480
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      TCTCCTTCTCCTTCAACATCTAATCATCACGGAGAAAGGATAAGGGGTGG-GTTCACAAA 105
                                                                                  

consensus_6939#0      TCTTCGCCGGAGGCACCGTCTCCGCCATCCGAGTCATCTGGAAATGGTGGCGGTGGCGGC 540
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      TTTTTTC---AATTGTGTTCTTATTTATTAGAGGTAATTAAGTA-ATTATTATTAGAGGT 161
                                                                                  

consensus_6939#0      GGCGGCGGCCGCTCCTCGCCGCCGCCAAACTGGTCGCCCCCTCCGCAGCAGCAGCAGCAG 600
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ACAAATTAAGGTCTCTGAGAGAGAGGGGCCGGGGTGGGCCCTAGCTAG--GTAATGGCAG 219
                                                                                  

consensus_6939#0      CACCAGTCCGGAGGCTCAACTCCATCACCTCCTCCGTCTCCGTCCTCTAACCAGCCACCG 660
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      CCTCG--CCGGAG--TCGTCTCCGTCG--TCGGCCAACTCCA----CCACCCCGTCAGCA 269
                                                                                  

consensus_6939#0      CCATCGAGTGGCTCGTCAGCGTCATCGTCGGAACCATCTCCGCCTCGCTCATCGCCGCCG 720
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      CCGTCG------CCGTCTTCGTCGTTGTCAAAATCACCCTCACCTCCCTCC------CCA 317
                                                                                  

consensus_6939#0      CCATCGCCGCCGCAATCAAGTGGCGGCAATAATGGCCAACCGCCTAAACCTTCCGGCGGG 780
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      TCATCGCCGCCGCCACCA----GCATCGACGAACGC--GCCACCAAAATCAGCTGGCGGC 371
                                                                                  

consensus_6939#0      CAGCAGCAAGCTCCTCCGCAGTCACCTCCGTCGGCGGCGAACCAGTCGGTGGTGTTCATT 840
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      --GTTTCAT-CTTCCACGCAAGCGCAACCATCGTCGG--AATCA-TCGTCGGAGTCTACG 425
                                                                                  

consensus_6939#0      CCCGTCCCGGTGGCGTCGAACAGCCCTCCCGGAATGCTGCCGCCACCGCAGGTGATCGAC 900
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ACTACGCCTTCGGCGCC----AGCGGAGAGGAAGAGCGGCGGGTCCTCTCGAGGA--GAG 479
                                                                                  

consensus_6939#0      GCCACGCCCTCCGGCGCCATCTCGTCGACCAACTTCCCCGGAGGAAGAAACAGCACGGCG 960
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      TCCGGGCGGTATCGCGGTGATGTGACCGCCGGCGTGTTTGTGGGGTTATTTGTGGTGGCG 539
                                                                                  

consensus_6939#0      GGCTCCTCCAACACTTCATTGTCACAGCAGCAACACACAACCGTAAGCTCGACGGCCCAG 1020
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      A-TGGTTGCGGTG-TTGGCGGGTGTGGTGGC----CATCGTGGTGTGCT--GCTGTATAA 591
                                                                                  

consensus_6939#0      GCCAGCAGCAGCGGCCACATAGCCGCCGCCATCGCCGGCGCCGCGGTCACGGGCCTCCTG 1080
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      A--GATAACGAAGAAGAAGAAGCGGCCGCCGCCGCCGA--------ACATGCCCTTCTTC 641
                                                                                  

consensus_6939#0      TGTGCCATAGTGGCCATCTACCTCATCGTGTCGAGCCGGAGGAAGAAGAAGATGGATGGG 1140
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ACCGACGAGAAGGGCAACG-------TGTACTACGCCACAGGCGGCCTGCCTCCCATGTG 694
                                                                                  

consensus_6939#0      CTGGTCTACCACTACGATGGCAACAACTACTTCGTGCCATCGTCTCAGTTTGGCGGGTCA 1200
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      GCAG-----CAGCACGGCAGCAGCAACTACAGCATCCCACCTCCGCCGCC---------- 739
                                                                                  

consensus_6939#0      AGCCGCAACCACCACCCACCACCGTCGGCGATTATGCTCAACTCCGGTGGGGCGTCAGCG 1260
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      -GCC-CGGCTGGCACATGTCATCGTCGGCGGGGGGTTTCAGCGGCGAGATGGGGATGGGG 797
                                                                                  

consensus_6939#0      GACGGCGGCGGGTAC-TACAATTCGGGGACATTCTCGGGCGGAGAGGGGACAGGGCCGGC 1319
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      TACT-CGTCGGGACCGTACGGTCCGGCGCTGCCGCCGCCGTCGCCGAACGTGGCGCTGGG 856
                                                                                  

consensus_6939#0      GGGGTCCAAGTCGCGGTTCAGCTACGAGGAGCTGACGGGGATCACCAGCAACTTCTCGCG 1379
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      TTTCTCCAAGAGCTCCTTCTCGTACGAGGAGCTGGCGGCGGCGACGTCGGGGTTCTCGGC 916
                                                                                  

consensus_6939#0      GGACAACGTGATCGGCGAGGGCGGGTTTGGGTGCGTGTACAAGGGGTGGCTAAGCG---A 1436
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      GGCGAACCTGCTGGGGCAGGGAGGGTTCGGGTACGTGTACAAGGGGGTGCTCGCCGGGAA 976
                                                                                  

consensus_6939#0      CGGCAAGTGCGTGGCCGTGAAGCAGCTCAAGGCCGGGAGCGGGCAGGGGGAGCGGGAGTT 1496
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      CGGGAAGGAGGTGGCGGTGAAGCAGCTCAAGTCCGGGAGCGGGCAGGGGGAGCGGGAGTT 1036
                                                                                  

consensus_6939#0      CCAGGCGGAGGTGGAGATCATCAGCCGCGTCCACCACCGCCACCTCGTCTCCCTCGTCGG 1556
consensus_6939#2      -------------GACATCATCAGCCGGGTGCACCACCGCCACCTCGTCTCCCTCGTCGG 47
consensus_6939#1      CCAGGCGGAGGTGGACATCATCAGCCGCGTCCACCACCGCCACCTCGTGTCTCTGGTGGG 1096
                                   ** *********** ** ***************** ** ** ** **

consensus_6939#0      CTACTGCATCGCCGCGCACCACCGCATGCTCATCTACGAGTTCGTTCCCAACGGCACCCT 1616
consensus_6939#2      CTACTGCATCGCCGGCGCGCGCCGCGTGCTCGTCTACGAGTTCGTCCCAAACAAGACCCT 107
consensus_6939#1      ATACTGCATCGCCGCCAACCAGCGCATGCTCGTCTACGAGTTCGTCCCCAACGGCACCCT 1156
                       *************     *  *** ***** ************* ** ***   *****

consensus_6939#0      CGAACACCACCTTCAT------GGCCGTGGCATGCCAGTGATGGACTGGCCGACGAGGCT 1670
consensus_6939#2      CGAGTTCCACCTCCAT------GGGAAAGGCTTGCNGGTGATGCCATGGCCGACGAGGCT 161
consensus_6939#1      CGAGCACCACCTCTATAGAGGCGGCAATGGCGATCGAGTTCTAGACTGGTCGGCGCGGCA 1216
                      ***   ******  **      **    ***   *  **  *    *** ** ** *** 

consensus_6939#0      GCGGATTGCCATTGGTGCAGCCAAGGGGCTAGCATACCTACACGAGGACTGCCACCCGCG 1730
consensus_6939#2      GCGCATTGC-GTCGGGTCGGCGAAGGGGCTCGCCTACCTACACGAAGACTGCCATCCTCG 220
consensus_6939#1      CAGGATCGCGCTGGGGTCGGCCAAGGGTCTCGCCTACCTCCACGAAGACTGCCACCCGCG 1276
                        * ** **  * **  * ** ***** ** ** ***** ***** ******** ** **

consensus_6939#0      GATTATCCACCGGGACATCAAGACCGCCAATATCCTACTGGACTACTCGTGGGAAGCACA 1790
consensus_6939#2      GATCATCCANCGCGACATCAAATCCGCCA------------------------------- 249
consensus_6939#1      GATCATCCACCGCGACATCAAGGCGGCCAACATCCTCCTGGACGCCAACTACGAGGCCAT 1336
                      *** ***** ** ********  * ****                               

consensus_6939#0      GGTGGCAGACTTTGGGCTTGCGAAGCTGGCGAATGATACGCACACTCACGTGTCGACGCG 1850
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      GGTCGCCGACTTCGGCCTCGCCAAGCTCACCACCGACACCAACACCCACGTCTCCACCCG 1396
                                                                                  

consensus_6939#0      CATCATGGGCACCTTCGGGTACCTAGCGCCAGAGTACGCCTCCAGCGGCAAGCTCACGGA 1910
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      CGTCATGGGCACCTTCGGCTACCTGGCCCCCGAGTACGCCTCCACCGGCAAGCTCACCGA 1456
                                                                                  

consensus_6939#0      CCGCTCCGACGTCTTCTCCTTTGGTGTCGTCCTACTGGAGCTCATCACCGGCCGCAAGCC 1970
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      GAAGTCCGACGTCTTCTCCTTCGGCGTCATGCTGCTGGAGCTCCTCACCGGGCGGCGGCC 1516
                                                                                  

consensus_6939#0      GGTTGACCAGACGCAGCCCCTCGGAGAGGAGAGCCTCGTCGAATGGGCACGACCAGTGCT 2030
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      CGTCGAC-ACCTCCAACTACATGGAG--GACAGCCTCGTGGACTGGGCGAGGCCGGTGCT 1573
                                                                                  

consensus_6939#0      GGCGGAT-------------GCGGTAGAGACGGGTGATC--TCAGTGAGCTGGTTGATCC 2075
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      GGCGCGCTTGCTGGTCGCCGGCGGCGAGGAAGGAGGATTAATCCGGGAGCTGGTGGACTC 1633
                                                                                  

consensus_6939#0      ACGGCTAGAGGGCGCATACAACCGCAATG-AGATGATGACGATGGTGGAAGCAGCGGCCG 2134
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      GCGGCTGGGCGGGGAGTACT-CGGCGGTGGAGGTGGAGAGGATGGCGGCGTGCGCGGCGG 1692
                                                                                  

consensus_6939#0      CATGTGTTCGCCACTCCGCTCCCAAACGGCCGCGGATGGTGCAGGTGATGCGGGTACTAG 2194
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      CGAGCATCCGGCACTCGGCGCGGCAGCGGCCCAAGATGAGCCAGATCGTGAGGGCGCTGG 1752
                                                                                  

consensus_6939#0      ATGAGGGGAGCATGACGGACCTTAGCAATGGGATCAAGGTGGGGCAGAGCCAAGTGTTCA 2254
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      A-GGGGGACGCCTCGC-----------------TCTCGCTGGACCACCACCACGA---CG 1791
                                                                                  

consensus_6939#0      CTGGTGGCAGCGACGCTGCTGACATCCAGCAACTCCGTCGTATCGCATTCGCCTCCGAGG 2314
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ACGACTTCTCCGCCTCATCGGAGATCTCGCGGCATCGGCAGGTGGCCTTCGACAGCGGCG 1851
                                                                                  

consensus_6939#0      AGTTCACCGGAGAGTTTGAGCAGAGAACAACCAACTCCAACTCTGAGTCGCGGCCGATGA 2374
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ACTACACCGACGACTAC---------TCCACCACCTCCACCTCC-ACCCACTCCTCCCGC 1901
                                                                                  

consensus_6939#0      ATCGGATACCAGAGTAATAACGCCTTGTATGTTTTGAAGTGCTTAGCACCGGTGCAATTA 2434
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      CTCCCACCCAAGCGCTA-ATCATCACTAATTCTTTTATTTATCGATTTAAATTATAATTA 1960
                                                                                  

consensus_6939#0      CGTGATAAGGGTGACAACAAGAGGTGAGTCCATATAGAACTGAACTGAACTCAAAAACAC 2494
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      GCTGGT----TTCACAAATCACCCTACACTCGTGGAGAAACCATCTTTACTC-------C 2009
                                                                                  

consensus_6939#0      ATGTAGGAAATTCAGGGTTTTGGGTCTAATTTTCGGCAGTTTGTACTTATGTACTTCAAA 2554
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      CGGTTGGATATCCA----TTTAATCCCGGTTTTC--CAACCGGGAGTAAGGA--TCCGGG 2061
                                                                                  

consensus_6939#0      ACCCTTTTGCACATGGAGGACATTCA-ATCAAGTGATAAAGATATAGGGAAATCAGTCTA 2613
consensus_6939#2      ------------------------------------------------------------
consensus_6939#1      ACTAACCGGGACTAAAGATGTATCCTTAGCCACCAACCAGGACTAAAAAGAAGGGATCAA 2121
                                                                                  

consensus_6939#0      TTAGGATCCATAATGGTTTGCTAAGCACATACCATCAGC 2652
consensus_6939#2      ---------------------------------------
consensus_6939#1      CCGGGACTAAACAGACAATA------------------- 2141
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)