These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 826 fasta sequence [TCTTTTTATTACCAAATGAACTTTATTTTATAGAAGCAGTCCTGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGCAATATTATATAAGGGTATTCAAAAGATTGACCGCCTCATACTATTGAAATATTAAAAGAAAAAAAAGATCTAATGAATAGAAAAGTGAATTATGAATGCATATAAACAAACAGGAGACGTTACAAACATCGTACTGTTTCTGTACTTACAAAATATTACCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCA] [+] EMBL CB620098 [TCTTTTTATTACCAAATGAACTTTATTTTATAGAAGCAGTCCTGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGCAATATTATATAAGGGTATTCAAAAGATTGACCGCCTCATACTATTGAAATATTAAAAGAAAAAAAAGATCTAATGAATAGAAAAGTGAATTATGAATGCATATAAACAAACAGGAGACGTTACAAACATCGTACTGTTTCTGTACTTACAAAATATTACCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACT ] [+] EMBL CB620100 [ gCAAATGAACTTTATTTTATAGAAGCAGTCACGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGCAATATTATATAAGGGTATTCAAAAGATTGACCGCCTCATACTATTGAAATATTAAAAGAAAAAAAAGATCTAATGAATAGAAAAGTGAATTATGAATGCATATAAACAAACAGGAGACGTTACAAACATCGTACTGTTTCTGTACTTACAAAATATTACCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCA] consensusID : consensus_6945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 794 fasta sequence [CCAAATAGCAAATGAACTTTATTTTATAGAAGCAGTCATGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCATGGCATCATCTATAAGTACATTGCTGGGTTTTAAATCACAATGGACTATAGGTGGTACGCAATAGTTATGTAGATAATCCAGGGCAGCAGCTATGTCAGCTGCAATTGTTATTCTAGAGGCGAAACTCAACTGTA] [+] EMBL CB625901 [CCAAATAGCAAATGAACTTTATTTTATAGAAGCAGTCATGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCATGGCATCATCTATAAGTACATTGCTGGGTTTTAAATCACAATGGACTATAGGTGGTACGCAATAGTTATGTAGATAATCCAGGGCAGCAGCTATGTCAGCTGCAATTGTTATTCTAGAGGCGAAACTCAACTGTA] [+] EMBL CB625899 [CCAAATAGCAAATGAACTTTATTTTATAGAAGCAGTCATGATTCATAACCAAGATATCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGATGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTTAACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCATTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCGTGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCATGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGTGAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTAGGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCATATTCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCATGGCATCATCTATAAGTACATTGCTGGGTTTTAAATCACAATGGACTATAGGTGGTACGCAATAGTTATGTAGATAATCCAGGGCAGCAGCTATGTCAGCTGCAATTGTTATTCTAGAGGCGAAACTCAACTGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6945#0 TCTTTTTATTACCAAATGAACTTTATTTTATAGAAGCAGTCCTGATTCATAACCAAGATA 60 consensus_6945#1 ----CCAAATAGCAAATGAACTTTATTTTATAGAAGCAGTCATGATTCATAACCAAGATA 56 * ** ***************************** ****************** consensus_6945#0 TCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGA 120 consensus_6945#1 TCATTAGCAAATGAATTATGAGAAATGCAAACTTTTTCAAAGGAAATGAACTGTCCTTGA 116 ************************************************************ consensus_6945#0 TGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTT 180 consensus_6945#1 TGAAAACTAGGGAGAGGCCATTATGCTCCGGTAGCTTGTCAACAGTTGAAGGAATTCCTT 176 ************************************************************ consensus_6945#0 AACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCA 240 consensus_6945#1 AACCCTGTAGCTCCAAAAAAGTTTCTTTGATTTCAACAACTTCAGCATAAACCTCTTGCA 236 ************************************************************ consensus_6945#0 TTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCG 300 consensus_6945#1 TTACTGGTCGATCTTTTGGTATCTCTACCGAGCATGAGAGACCAAGTTTAGCCAGTTGCG 296 ************************************************************ consensus_6945#0 TGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCA 360 consensus_6945#1 TGATGCAGCTCAAAATTCTGACCGTTTCATGGTAATGCTGTTCATCTTCTAAATTTGGCA 356 ************************************************************ consensus_6945#0 TGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGT 420 consensus_6945#1 TGATATTAGGATCTATGATCTTCCCAATGTTATGAGGAAACGCCTTTTCCACGAATTTGT 416 ************************************************************ consensus_6945#0 GAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTA 480 consensus_6945#1 GAAGGCTCATGCCATCATTAAACATGCCATCAGTTGGACGCTTCCCTGTTAGCATTTCTA 476 ************************************************************ consensus_6945#0 GGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCAT 540 consensus_6945#1 GGATGATAATTCCATAGCTGTATACATCGCCCTCTGTAGAGATTTTGCTTCCAAAACCAT 536 ************************************************************ consensus_6945#0 ATTCTGCAATATTATAT---AAGGGTATTCAAAAGATTGACCGCCTCATACTATTGA-AA 596 consensus_6945#1 ATTCTGGTGCAATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAA 596 ****** * * *** * * * ** ** *** ** * ** ** consensus_6945#0 TATTAAAAGAAAAAAAAGATCTAATGAA--TAGAAAAGTGAATTATGAATGCATATAAAC 654 consensus_6945#1 TCGTTGAAGAACTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCAC 656 * * ***** * ** ** ** ** ** ** * * * ** consensus_6945#0 AAACAGGAGACGTTACAAACATCGTACTGTTTCTGTACTTACAAAATATTACCTGGTGCA 714 consensus_6945#1 CCATGGCATCATCTATAAGTACATTGCTGGGTTTTAAATCACAATGGACTATA-GGTG-- 713 * * * ** ** * * *** * * * * **** * ** **** consensus_6945#0 ATGTATCCAATTGATCCTCTTGGTCCTGCTAAGCTCGTAGAACTGTTAATCGTTGAAGAA 774 consensus_6945#1 --GTACGCAAT-AGTTATGTAGATAAT-CCAGGGCAGCAGCTATGTCAGCTGC--AATTG 767 *** **** * * * * * * * * * * ** *** * * ** consensus_6945#0 CTATAACTGTGAAGAAACTTACTTAACCCAAAGTCGCCAAGACGTGCACCCA 826 consensus_6945#1 TTATTCTAGAGGCGAAACTCAACTGTA------------------------- 794 *** * * ****** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||